Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04772
- Subject:
- NR_135756.2
- Aligned Length:
- 5852
- Identities:
- 965
- Gaps:
- 4887
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC 27
|||||||||||||||||||||||||||
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 28 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 102 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG------- 289
Query 176 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 249
||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ----------------------------------ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 329
Query 250 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 403
Query 324 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATT 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTC--------------- 462
Query 398 TGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTT 471
Sbjct 463 -------------------------------------------------------------------------- 462
Query 472 TCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ------CAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 530
Query 546 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 604
Query 620 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 678
Query 694 GGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCT 752
Query 768 CCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGC 826
Query 842 TGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTA 900
Query 916 GAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCT 974
Query 990 CTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCT 1048
Query 1064 GCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT------------------------------------ 1101
||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGC 1122
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1123 TTGACACTGGGGAATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAAC 1196
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1197 TCTCTAGAAATGTCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCC 1270
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1271 CCCAAATTAAGGACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAG 1344
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1345 ATTGATGGGCCTCCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCC 1418
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1419 AGATTCCCTTTTGAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGT 1492
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1493 TATTTCCCTGAGACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACC 1566
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1567 CCGTGGCCTCAATGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCT 1640
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1641 CAGTGAGGGTCCCAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGA 1714
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1715 CTTTTGTGAGGGATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGC 1788
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1789 AGAAAAATGATTTTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTT 1862
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1863 GAAGCTTTACAAGATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACAC 1936
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1937 ACATTGAAATAAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTT 2010
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2011 GTCACATGTGAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTG 2084
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2085 TCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCC 2158
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2159 TGCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTA 2232
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2233 GAGACGGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCC 2306
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2307 AAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTAC 2380
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2381 AGCCCGTGCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTA 2454
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2455 GCTTACTGCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGT 2528
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2529 CCATAAACAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTT 2602
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2603 CCTTTCAAAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTT 2676
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2677 TTAAAATGTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGA 2750
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2751 AAAATTATTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTA 2824
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2825 TAATGCTACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAA 2898
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2899 CACCTGCTGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTAT 2972
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2973 CTGCACTGTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATA 3046
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3047 GTAAAATAGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAAC 3120
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3121 CTCTACATGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACT 3194
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3195 GCTACCTATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATG 3268
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3269 GAATGGAGCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCT 3342
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3343 TGTTTGAAATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAA 3416
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3417 CAACAGCAGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAA 3490
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3491 TTGATGAGAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATG 3564
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3565 TCATTCTTAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGA 3638
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3639 ATTGTGTCCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACAC 3712
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3713 TAGGTAGAAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCA 3786
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3787 GGTAAGTTTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAG 3860
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3861 GCCTTCCTATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAAT 3934
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3935 TGTTATCATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTT 4008
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4009 TGAGCACATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCA 4082
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4083 CTCTGGCTAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACAT 4156
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4157 TAAACATCTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTC 4230
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4231 TCACTTCTGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCA 4304
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4305 GTTGGCTTATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAA 4378
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4379 GCCAATTTTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGC 4452
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4453 TATAAAGTACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATG 4526
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4527 GATTTCTAACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATA 4600
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4601 AACACACTCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTT 4674
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4675 TGTGGTTTTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTG 4748
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4749 CCTTTTCTTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCA 4822
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4823 AGTCTCGGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGG 4896
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4897 AGTTTGAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGT 4970
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4971 GGCGCGCACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTG 5044
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5045 CATTGAGCTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATT 5118
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5119 CAAGTTTCACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGT 5192
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5193 GTCTCTAGGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGC 5266
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5267 CTTTGAAGTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGAT 5340
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5341 GGGCAGAAGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTT 5414
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5415 TCCACTCAAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGA 5488
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5489 GTCTAAATGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCA 5562
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5563 TTTGGAGTGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAA 5636
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5637 TTGAGCTTGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGA 5710
Query 1102 ------ 1101
Sbjct 5711 TACGAA 5716
