Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04772
- Subject:
- NR_135757.2
- Aligned Length:
- 5921
- Identities:
- 1006
- Gaps:
- 4915
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC 27
|||||||||||||||||||||||||||
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 28 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 102 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 296
Query 176 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 370
Query 250 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 444
Query 324 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATT 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTC--------------- 503
Query 398 TGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTT 471
Sbjct 504 -------------------------------------------------------------------------- 503
Query 472 TCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ------CAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 571
Query 546 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 645
Query 620 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 719
Query 694 G---------------------------------------------------------------------GCTG 698
| ||||
Sbjct 720 GGGCTTCTGTACTGCTGCACATGCTGTTCCCTCTGCTTGGAATGCTCATAACACATTTCCATTTATTCCAGCTG 793
Query 699 TGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAG 867
Query 773 CTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTAT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTAT 941
Query 847 CATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCT 1015
Query 921 GCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTC 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTC 1089
Query 995 CCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 CCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCC 1163
Query 1069 ACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT----------------------------------------- 1101
|||||||||||||||||||||||||||||||||
Sbjct 1164 ACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGAC 1237
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1238 ACTGGGGAATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCT 1311
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1312 AGAAATGTCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAA 1385
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1386 ATTAAGGACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGA 1459
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1460 TGGGCCTCCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATT 1533
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1534 CCCTTTTGAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTT 1607
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1608 CCCTGAGACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTG 1681
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1682 GCCTCAATGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTG 1755
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1756 AGGGTCCCAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTT 1829
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1830 GTGAGGGATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAA 1903
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1904 AATGATTTTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGC 1977
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1978 TTTACAAGATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACACACATT 2051
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2052 GAAATAAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTTGTCAC 2125
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2126 ATGTGAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCC 2199
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2200 CAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCT 2273
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2274 CAGCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGAC 2347
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2348 GGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGT 2421
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2422 GCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCC 2495
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2496 GTGCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTA 2569
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2570 CTGCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATA 2643
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2644 AACAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTT 2717
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2718 CAAAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAA 2791
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2792 ATGTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAAT 2865
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2866 TATTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATG 2939
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2940 CTACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCT 3013
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3014 GCTGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCA 3087
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3088 CTGTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAA 3161
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3162 ATAGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTA 3235
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3236 CATGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTAC 3309
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3310 CTATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATG 3383
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3384 GAGCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTT 3457
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3458 GAAATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACA 3531
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3532 GCAGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGAT 3605
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3606 GAGAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATT 3679
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3680 CTTAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGT 3753
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3754 GTCCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGT 3827
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3828 AGAAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAA 3901
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3902 GTTTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTT 3975
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3976 CCTATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTA 4049
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4050 TCATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGC 4123
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4124 ACATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTG 4197
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4198 GCTAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAAC 4271
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4272 ATCTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACT 4345
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4346 TCTGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGG 4419
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4420 CTTATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAA 4493
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4494 TTTTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAA 4567
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4568 AGTACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTT 4641
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4642 CTAACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACAC 4715
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4716 ACTCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGG 4789
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4790 TTTTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTT 4863
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4864 TCTTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCT 4937
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4938 CGGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTT 5011
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5012 GAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGC 5085
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5086 GCACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTG 5159
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5160 AGCTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGT 5233
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5234 TTCACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTC 5307
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5308 TAGGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTG 5381
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5382 AAGTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCA 5455
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5456 GAAGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCAC 5529
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5530 TCAAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTA 5603
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5604 AATGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGG 5677
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5678 AGTGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAG 5751
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5752 CTTGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGA 5825
Query 1102 - 1101
Sbjct 5826 A 5826
