Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04821
- Subject:
- XR_001736963.2
- Aligned Length:
- 5181
- Identities:
- 710
- Gaps:
- 4470
Alignment
Query 1 -------------ATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCGCCGGCAGGGAGGCATA 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTGGCATCAGCGATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCGCCGGCAGGGAGGCATA 74
Query 62 GCGCCTCTCTGATCTTCCTGCATGGCTCAGGTGATTCTGGACAAGGATTAAGAATGTGGATCAAGCAGGTTTTA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GCGCCTCTCTGATCTTCCTGCATGGCTCAGGTGATTCTGGACAAGGATTAAGAATGTGGATCAAGCAGGTTTTA 148
Query 136 AATCAAGATTTAACATTCCAACACATAAAAATTATTTATCCAACAGCTCCTC---------------------- 187
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AATCAAGATTTAACATTCCAACACATAAAAATTATTTATCCAACAGCTCCTCCCAGTTACACTGTTGGACCAAG 222
Query 188 -----CCAGATCATATACTCCTATGAAAGGAGGAATCTCCAATGTATGGTTTGACAGATTTAAAATAACCAATG 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTTGCCAGATCATATACTCCTATGAAAGGAGGAATCTCCAATGTATGGTTTGACAGATTTAAAATAACCAATG 296
Query 257 ACTGCCCAGAACACCTTGAATCAATTGATGTCATGTGTCAAGTGCTTACTGATTTGATTGATGAAGAAGTAAAA 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACTGCCCAGAACACCTTGAATCAATTGATGTCATGTGTCAAGTGCTTACTGATTTGATTGATGAAGAAGTAAAA 370
Query 331 AGTGGCATCAAGAAGAACAGGATATTAATAGGAGGATTCTCTATGGGAGGATGCATGGCAATGCATTTAGCATA 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 371 AGTGGCATCAAGAAGAACAGGATATTAATAGGAGGATTCTCTATGGGAGGATGCATGGCAATACATTTAGCATA 444
Query 405 TAGAAATCATCAAGATGTGGCAGGAGTATTTGCTCTTTCTAGTTTTCTGAATAAAGCATCTGCTGTTTACCAGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAGAAATCATCAAGATGTGGCAGGAGTATTTGCTCTTTCTAGTTTTCTGAATAAAGCATCTGCTGTTTACCAGG 518
Query 479 CTCTTCAGAAGAGTAATGGTGTACTTCCTGAATTATTTCAGTGTCATGGTACTGCAGATGAGTTAGTTCTTCAT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTTCAGAAGAGTAATGGTGTACTTCCTGAATTATTTCAGTGTCATGGTACTGCAGATGAGTTAGTTCTTCAT 592
Query 553 TCTTGGGCAGAAGAGACAAACTCAATGTTAAAATCTCTAGGAGTGACCACGAAGTTTCATAGTTTTCCAAATGT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTTGGGCAGAAGAGACAAACTCAATGTTAAAATCTCTAGGAGTGACCACGAAGTTTCATAGTTTTCCAAATGT 666
Query 627 TTACCATGAGCTAAGCAAAACTGAGTTAGACATATTGAAGTTATGGATTCTTACAAAGCTGCCAGGAGAAATGG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTACCATGAGCTAAGCAAAACTGAGTTAGACATATTGAAGTTATGGATTCTTACAAAGCTGCCAGGAGAAATGG 740
Query 701 AAAAACAAAAA--------------------------------------------------------------- 711
|||||||||||
Sbjct 741 AAAAACAAAAATGAATGAATCAAGAGTGATTTGTTAATGTCATTAGCTATTGTTAGTGTTAGTGTATTTTTTGT 814
Query 712 -------------------------------------------------------------------------- 711
Sbjct 815 GTGGCCCAAGACAATCTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAAATTGGACACACTTGATGTAAACATTTC 888
Query 712 -------------------------------------------------------------------------- 711
Sbjct 889 AAGAAAATTCAGACTATATGATCACTCAAGACAGCCGATTCACCAGCCTTCTGAAGGGAAGACTAAGCATATTC 962
Query 712 -------------------------------------------------------------------------- 711
Sbjct 963 CTATATTGAAGAAGGAAAGATATCCATGATGGTGATGCCACTAAATAGAAGCATCTTGGATCTTACTATTTGGA 1036
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1037 GTAGAACCACACAAGGAGAAGCCATCCAACCTACATAAGACTATGACGCTACCATTGAAATGGAAAATTTGCTG 1110
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1111 GAGAAAGTTGATTAAGTAACATTTCACGGAAGAGGAGAATTGTAATAACCATTTGATAGAAGAGAGATGTCCTT 1184
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1185 GAACTCAATCTATCCTGAAGATGCTCCTGAGAGGGCAAACAAATAACATCTCTCTGGAAGGATGCCTGCCTTTG 1258
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1259 TCAAAGCTTTCAAATCTGTATGACTTCTATCTTTCCTTGGCTTCCCTTACTCAATTAGTCAAGGATCCTTGTGG 1332
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1333 ATGTTTAACATAAAATGTCACTCACATCTGCCCTCCTCCTCAACTTTCCATTCCATCCTCTCCACAGATGCCTG 1406
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1407 ATGCATTTTCTTCTGACTCAGTCTTCTGTTTTTCATGGAGAACACAGAGCAAGACAGAAGCTCCCAACTGTGGC 1480
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1481 ATCCAAGAGCAACTTGAGCTGCTCCCTTACTTATCTCTGGTAATGATTTGAATCCTTTGCTTTTGCCAGACTGA 1554
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1555 CTCATCTAGTCATTGCTCCCCAAATATTCATTTCCCCATTATTTCTTGTGGCCTAAGCACCAAATTTTGTTCTT 1628
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1629 TCAAAATCTACTCTTCCTTCAGGTCTGGCTCAAACTCTTTGTGATGACTGTTCTACCATATGGCTTAATAGCTA 1702
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1703 AGTACACATGCATTGACCTCAAGCCTTCCCACAGCTCAGGTTCCTGAGGCACAGACTCTGGATGGAAATTAGCA 1776
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1777 CATAATAGGTTTATTAGAAAGTGCTCTTGGAATTAACATCTTTGGAGGAAGAAAAGAAGCAATATTGTCCAGAG 1850
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1851 AGGGAAGTTGAACTGCAATGAAGTTGCCACAGAGGCTTCAATGAATCCTTCTGGGTGTAGAGCTGGGATGACCT 1924
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1925 TTCCAGAGTTTTCCAATTAAGGGAATTGTATCTCACCTCAATCTCTAGTCTGAACCTTGGGTGAGGCAGCTTCT 1998
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1999 TTCAGCCAATGGCAATTCCTGGAGGCACCAGGAGTTATGAGCAGTCAACACTCTTTCTTTGCTCCTGAGAAAAT 2072
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2073 TGAGTGCCCTCTTTGGTCCTGAAAGCAGCTCTGGGCAGCACTCCACAGCATCCACTACAGACTTAGTGAGTTCA 2146
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2147 CCCTGGCTCTCCCACTTACAGATTGCAGCTGCTTTGATTTAAGAAGACAATACCATTTCCAGACATCTCTTTCC 2220
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2221 TGGGGCTAACTATATTAGTATTCTGCCCTGATGGGAAGGAAGAAACTTCATGGGCAGTAAATAGCCAATTTAGA 2294
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2295 AGCAGGAGAAATATGAGGATAATATTCTATTTACTTAAGGGACACAAAGTAAATAAATGTTTTTGAAACTGAAT 2368
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2369 TGGATTGAAGTGGATCCAGATTTTCACAGGAAAAAAAAGTTTCCTTTTCCCTTAGTTCTCCTTACACACCTGGC 2442
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2443 TTTGCAGGAAAAGAAATTATCATTTGGAAACACACATCTGCCTCAGCCACAGGTGAGATATTAATGCATTCCCA 2516
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2517 CATGTCCCAAATCCTCGATCTTTGATCAGTATGATGGGAACTTTCATTGTCCAATAAAGCAAGGGACGGACTCT 2590
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2591 TTGTTTCATTCAAGTCAGTATTTCTTCTAACGGAAACTCACCCCAGGATGAAACAGCCCTGCATTTCCAGCAGC 2664
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2665 CTCTGGAGTGTCAGGTGGCCCTTCAGCCTTTGAATGCCGTGGGCTGGATTGACTCAACCATGGTTAGCTGACTT 2738
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2739 TTATTTCTTTTCTTCCTTCCTGCTCATTCAATATCATCAACCAGAGGGAAGGAGCTCTGTGTCATAAAAGTGAC 2812
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2813 CACAGCTGAGCCAATCTCGCCCTATGCCAGTCCACGTGGTAATTTTGGAAGGGCCCTGGGATATCTGACCTTAT 2886
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2887 GATGGTAAGAAAGTTTTGTGATTAATGGTGATTTTTATCTTCCGACTTCAAAGATTGACTCATGCAGAGAATGA 2960
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2961 GCAATCTATAGGTCAGATATCTTACATCCCAGTTATTTTCTTTCTTCAGTCAAGTATTGGGAGAACTAAACACT 3034
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3035 GACCAGCTGTAAAAGACATCTATCCTGTCTGCAGAAAAGCCTATCTAATGGGCCTCTGAGGGGAATTGTTTAAA 3108
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3109 ATAATGCTATGCAATTTCTCCAAGAGTTTCTGCTGGAAAAAAAAAAAAATGAACAAATGGAAAATTTAACGCCT 3182
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3183 GAATGATCGATACTTTCTTCATGAAGCAAGGTTATTCTCTTGCCTTTTTCTCTTGTGGATGAGGTATTTTGCAG 3256
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3257 GTACTTTAAGAAGTCAACCTACCTTTTATTCAGCAATGTATCAAATATTTATTGAGGGTTTTATTACAAGATAC 3330
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3331 AGTACAGGTCCATGGGGTTATAAGGGTAGAAATAAGTGGTGCCCAGCACTGAAGGATTTTAATAATAATAATGT 3404
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3405 TAGCAATGCCAATCATAACCTCTAATGCATCTACTAAGCTTTACTTTTTACAGTGCTTTAATATATCCTGTCAT 3478
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3479 TTTAATAATTCTTATAATTTGTTATAATGTGATAACTTTTTAACATCATTTTAGCATTATATTTTATTTCATCT 3552
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3553 CATTTGATAATATAAGATGCTTAGCCCATTGTGTGCCCAGAAGTACAGTAAGTCCTTACTTATCTTGGACAATA 3626
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3627 GGTTCTTGGAAACTGGAACTTCAAGTGAAAGAACACATAACGAAAATAGCTTTGCTATAAGCTAACCGATCTAA 3700
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3701 ACAAGAGTTAAGTTGCTACAGCATATTTTGGTCACAAAAAAAAAAATCACCAAACTTCTAAAGAAAGACCCAAA 3774
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3775 CACTTCTAATATTGAAATAAACATCAAAATAACTTTGAAAGGAAGGTGAGCTACACATACACTTAAGAAAGGTT 3848
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3849 AACAAAAACAAGTAAGATAATAATTTACCCACTTATTCAAGTTCAGAAGCTCAAGGGGCCAGAGCCACTTCTGG 3922
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3923 TAGCTCAGGGTACCAGGCTGGAACCAGCCCCAGACAGGTCACCATTCCCATTGCAGGGCCCACTCATACATAGC 3996
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3997 AACACTCACTCACGCTGGGACCAGTGAGACACACTGATTCATCTAACGGACACAGCTTTGGGTTTTGGGAGGAA 4070
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4071 ACCAGACATGGGGAGGACATGCAAAGTCCACACACACAATGACTTCAGCTAGGAATCCATTTTTTTTTTCTCAT 4144
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4145 CAACATTATAAGGAAATTACATTGAACTTAAATGACATTATTCAAGGACCTGCTTTGTAAGCTTAAGAAACAGT 4218
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4219 AGAACCCCCCTTACCCAGACACCTTGTTCCCTTAGGTATAATGAATTTAAAACTGCATTTGCATATTTACATCA 4292
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4293 AACACTTGTCACATAGCTGGGCTTTCTGTTTTGTGTAGCCAGGAGGATTTCATAACTTTTCCAAACAACAACTG 4366
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4367 CCTATTTTACATTGACTTAGTTTCCTCTTTCCTTTGTGTACACAGGTAGAAAAGGCTTGGACTACATGTTTGGT 4440
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4441 TTGAAGTTTGAAAATCTCAGTCCTTCCCCAACCATCAAAAATATTTACCTCCCTCCCTTGTCTCACAATCATCT 4514
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4515 AAGCTGCCTTCTTGAATTGACTCCCACACCTGTTCATCATAGAAGGAAAAAAATAAAAGCAAATGCCATATAAA 4588
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4589 ATCTCTCTTCTTCAACAAGGTCTTCTGTTTTGAAATATTGAAACAGTTCCTGTTCTATTACCTCACCAGCTGTG 4662
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4663 GCCTTTTATCTCCTAAAGGGAATAGCTGACGTCTTACCAGTCAAAGTCATTGTGCTTACGGACGCCATAAATAT 4736
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4737 CTCCTTTAAATCCTACATGATAAATTTCCCTCTGATTGGTAAAGCAGATACTGTAACATGCAAAGGGGGAGCAG 4810
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4811 GAGAGTCTTTGATGATGTTAAACTAAGCCCCTGGAGATATCCCAGCTCTTCCTCCAGAATTTTACTTTCCAACA 4884
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4885 ACTGGAGTCAACAAATACGGTAGAAAATGTTGTCTGGATTATCTACTCCCATTATTTTTTTTTAAACTGGTTTT 4958
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4959 CAATGATGGGCAACCTAAAATTTACTCACACAGAACACAAAACAGTTGAATTTGTTAAAAGTCCAAAATGTGCT 5032
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5033 TTTGTACTTTTGTAAAATGGGAATGTGCTTCTTGTACAAATCACAATATGCTTTCTAGACCACAACCTAAAAAG 5106
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5107 GAAAGAAAAAAATCCTGTGAATAAAAAAAAAAAACAAGGACTTTCAGTTTTCTACATGCATTTGAAATGACTTT 5180
Query 712 - 711
Sbjct 5181 A 5181
