Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04855
- Subject:
- XR_001738613.1
- Aligned Length:
- 1987
- Identities:
- 1008
- Gaps:
- 922
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTAGCCCAGGGGCCGGCGCCTCCCCGCCTCGCGCGGACTGTCTCGTGCGGGCAGCTGCGGGCGCACCTGGACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGCAAGGCCCGGGCGGCGCCGATCCCCGCGGGACGCGCTGCGCTCGGGGCCTCCCGCCTCCCCCCCTGCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCGCCCCCCGGCCGCGCGGCGCCCCGCACCCTGCAGGGACGGCTGCCGCATCGCTGGGACAAACTCGGCAGC 222
Query 1 -------------------------------------------------ATGGTGCCCAGCTCTCCGCGCGCGC 25
|||||||||||||||||||||||||
Sbjct 223 GGAGGCAAAGTTATTTCCCCTCCCAGGCAGCGGGATTCCGACTGGCAAGATGGTGCCCAGCTCTCCGCGCGCGC 296
Query 26 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 370
Query 100 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 444
Query 174 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 518
Query 248 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 592
Query 322 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 666
Query 396 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 740
Query 470 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACT------------ 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACTGCCGCCCCCGAG 814
Query 532 -------------------------------------------------------------------------- 531
Sbjct 815 GGCAGCGTGGCCGGCGACTCCGCCTTCAGCCGCGCGCCGCGCTGTGCGCAGGTGGAGCGGGCTCAGCACTGCAG 888
Query 532 ----------------------------------------------------GACGTGAACGAGTGTGAGCTCT 553
||||||||||||||||||||||
Sbjct 889 CTGCGAGGCCGGATTCCACCTGAGCGGCGCCGCCGGCGACAGCGTCTGCCAGGACGTGAACGAGTGTGAGCTCT 962
Query 554 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 1036
Query 628 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 1110
Query 702 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 1184
Query 776 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATTCCAGTGTGAGCGGAACCCCTGCCCCATGGACAGCAGGCCC 849
|||||||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 1185 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATT----TG---GCGGA-------------GGA-AG------- 1230
Query 850 TGCCGCCATCTGCCCAAGACCATCTCCTTCCATT-----ACCTCTCT-----CTGCCTTCCAAC--CTGAAGAC 911
|||| .|..|.||||.||| ||| ||.| .|||.|.||||| |||.|||
Sbjct 1231 ---------------AAGA-AAAATACTTCTATTTGAGAACC-CTATTGAGGTTGCATGCCAACTTCTGGAGA- 1286
Query 912 GCCCATCACGCTCTTCCG--------------CATGGCCACAG-CCTCTGCCCCCGGCCGAG-----------C 959
|.|||.| .|||..||.|| ..||||.| |.||| |
Sbjct 1287 -----------TGTTCAGACAAGAAAAAAAGAAATGTGCAAAGAAATCTGTC-----CAGAGAAAATAAAGTTC 1344
Query 960 T---GGGCCCAACA----GCCTGCGGTTTGGGATCGTGGGTGGGAACAGCCGCGGCCACTTTGTGA------TG 1020
| | ||| |||| |||||.| .|||||||.|| .|.|...|.||| ||
Sbjct 1345 TTAAG------ACAAGTGGCCT----TTTGGCA---------AGAACAGCTGC-TCAAAGATATGAGGAAACTG 1398
Query 1021 CAGCGT--TCAGAC---------CGGCAGA-----CTGGGGAT-CTGATCCTTG---TGCAGAAC--------- 1065
.|||.| |||||| | |||| || | |||||||.|| |.||||||
Sbjct 1399 GAGCTTCATCAGACAATTTAAAAC--CAGAAAATGCT-----TACTGATCCCTGATCTCCAGAACATAACAAAA 1465
Query 1066 --------------CTG-------GAGGGGCCTC----AGACGC---------TGGAG---GTGGACGTCG-AC 1101
||| || || |||.|| |.||| ..|.|| ||| |.
Sbjct 1466 AAGCAAGAAAATAACTGAAAAACAGA------TCCAGAAGAAGCAACTATCATTTGAGAAAAAGAAC-TCGAAA 1532
Query 1102 ATGTCGGAATACCTGGACCGCTCC-------------------TTCCAGGCCAACCACG---------TGTC-- 1145
||.|...||||| .| |||.| .|||.|.| |.||
Sbjct 1533 ATTTAAAAATAC----------ACAAAGATATTAAAAAATATATTCAA---AAACAATGTTAGAAAGCTATCAA 1593
Query 1146 --CAAGGTCACCATCT--------TTGTA--TCCCCCTATGACTTC---------------------------- 1179
||||...|..|||| ||||| | |||||..|.
Sbjct 1594 AACAAGAATAAGATCTTAGTTAAATTGTAATT-----TATGAAATAATGATAAATAGAAACAGAGGAAATATCT 1662
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1663 TGGGATATAAAGAAAAAAGATAAAAAATAAGAGATATGTCTCATATAAAAGGATATGAATAAATAATCTCACCA 1736
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1737 CAATAGCACTAAGCAGAATGAATGAAAAAAGATTCACAATCGCATAGAATTAAGAATGCCAAGAATGAAGAGAA 1810
Query 1180 --------------------------------------------------------------- 1179
Sbjct 1811 GAGCCTTAAAGCTTCCAGAGAAAACAGGATACTTACAAAGATATTAGAATGAAATTGGTAAAT 1873
