Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04982
Subject:
NM_001301173.1
Aligned Length:
2782
Identities:
2409
Gaps:
5

Alignment

Query    1  ATGGAGGAGTCTGGCATGGCT-CATGAATCAGCAGAGGACTTGTTTCATTTCAACGTAGGGGGCTGGCATTTCT  73
            |||||||||.||||| .|||| |||||.|||||||||||.||||||||.|||||.||.||||||||||||||||
Sbjct    1  ATGGAGGAGCCTGGC-GGGCTCCATGAGTCAGCAGAGGATTTGTTTCACTTCAATGTCGGGGGCTGGCATTTCT  73

Query   74  CAGTTCCCAGAAGCAAACTCTCTCAGTTTCCAGACTCCCTGCTGTGGAAAGAGGCTTCAGCCTTGACCTCTTCA  147
            ||||||||||.||||||||..|||||||.||||||||.|||.||||||||||||||||||||.|||||||||||
Sbjct   74  CAGTTCCCAGGAGCAAACTTGCTCAGTTCCCAGACTCGCTGTTGTGGAAAGAGGCTTCAGCCCTGACCTCTTCA  147

Query  148  GAAAGCCAGAGGCTATTTATCGACAGAGATGGTTCCACATTTAGGCACGTGCACTATTACCTCTACACCTCCAA  221
            ||.|.||||.||||.||.||.||||||||.||.|||||.||||||||.||||||||||||||||||||.|||||
Sbjct  148  GAGAACCAGCGGCTCTTCATTGACAGAGACGGCTCCACGTTTAGGCATGTGCACTATTACCTCTACACGTCCAA  221

Query  222  ACTCTCCTTCTCCAGTTGTGCAGAACTGAACTTGCTGTATGAGCAAGCATTGGGTTTGCAGCTGATGCCTTTGC  295
            .|||||||||||||||||||||||||||||||||||.|||||||||||..|||||||||||||||||||.||||
Sbjct  222  GCTCTCCTTCTCCAGTTGTGCAGAACTGAACTTGCTCTATGAGCAAGCCCTGGGTTTGCAGCTGATGCCCTTGC  295

Query  296  TGCAGACTCTAGATAACCTGAAGGAAGGGAAACACCATCTACGCGTACGGCCTGCAGACCTACCTGTTGCTGAG  369
            |.|||||.||||||||||||||||||||||.||||||.||.||.||.||||||||.|||.|.|||||.||||||
Sbjct  296  TTCAGACCCTAGATAACCTGAAGGAAGGGAGACACCACCTCCGTGTGCGGCCTGCCGACATTCCTGTGGCTGAG  369

Query  370  AGAGCATCTCTGAACTACTGGCGTACATGGAAGTGTATTAGCAAACCCTCAGAATTTCCAATTAAAAGCCCAGC  443
            ||||||||.||||||||||||||.||||||||||||||.|||||.|||||.||.||||||||.||||||||.||
Sbjct  370  AGAGCATCCCTGAACTACTGGCGGACATGGAAGTGTATCAGCAAGCCCTCGGATTTTCCAATAAAAAGCCCCGC  443

Query  444  CTTTACAGGCCTACATGATAAGGCACCTCTGGGGCTCATGGACACACCCCTGTTAGACACAGAAGAGGAGGTGC  517
            |||.|||||.||.|||||.|||||.|||.||||.||||||||||||||.|||||.||||||||||||||.||||
Sbjct  444  CTTCACAGGTCTTCATGACAAGGCCCCTTTGGGACTCATGGACACACCGCTGTTGGACACAGAAGAGGAAGTGC  517

Query  518  ACTACTGCTTCCTGCCCCTAGACCTGGTGGCCAAATATCCCAGCCTAGTGACTGAAGACAACCTGCTGTGGCTG  591
            |||||||||||.|.|||||.|||.||||||||||.||.||.|||||||||||.||||||||.||||||||||||
Sbjct  518  ACTACTGCTTCTTACCCCTCGACTTGGTGGCCAAGTACCCAAGCCTAGTGACCGAAGACAATCTGCTGTGGCTG  591

Query  592  GCTGAGACGGTGGCCCTCATCGAGTGCGAGTGCAGCGAGTTCCGCTTCATTGTGAATTTTCTTCGCTCACAGAA  665
            |||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  592  GCTGAAACGGTGGCCCTGATCGAGTGCGAATGCAGCGAGTTCCGCTTCATTGTGAATTTTCTACGCTCACACAA  665

Query  666  GATTTTACTACCGGATAATTTCTCCAACATTGATGTATTAGAAGCAGAAGTGGAAATTCTGGAAATCCCTGCAC  739
            ||||||||||||.|||||.|||||||||||.|||||.||||||||||||||.|||||||||||||||||||..|
Sbjct  666  GATTTTACTACCAGATAACTTCTCCAACATAGATGTGTTAGAAGCAGAAGTAGAAATTCTGGAAATCCCTGAGC  739

Query  740  TCACTGAAGCCGTAAGGTGGTACCGGATGAACATGGGTGGCTGTTCCCCGACCACCTGTTCTCCCCTGAGCCCC  813
            |.||.|||||.|||.|||.||||||||||||.||||||||||||||||.||||.||||..|.||.||.||.||.
Sbjct  740  TTACAGAAGCTGTACGGTTGTACCGGATGAATATGGGTGGCTGTTCCCGGACCTCCTGCCCACCTCTAAGTCCT  813

Query  814  GGGAAGGGGGCCCGCACAGCCAGCCTGGAGTCCGTGAAACCGCTCTACACAATGGCCCTGGGTCTGCTGGTCAA  887
            ||.|||||||..||.||||||||..|||||||.||||||||.||.|||...|||||||||||.|||||||||||
Sbjct  814  GGAAAGGGGGGTCGTACAGCCAGTGTGGAGTCTGTGAAACCACTGTACTTGATGGCCCTGGGCCTGCTGGTCAA  887

Query  888  GTACCCGGACTCTGCGCTGGGCCAGCTTCGCATCGAGAGCACGCTAGACGGAAGCCGACTGTACATCACAGGGA  961
            |||.||.||||||||.|||||.|||||.|||||||||||||||||.|||||||||.||||.|||||||||||||
Sbjct  888  GTATCCAGACTCTGCACTGGGACAGCTGCGCATCGAGAGCACGCTGGACGGAAGCAGACTATACATCACAGGGA  961

Query  962  ATGGCGTCCTCTTTCAGCACGTCAAGAACTGGCTGGGGACTTGCCGGCTGCCCCTGACAGAGACCATTTCCGAG  1035
            |.||.|.|||.||.||||||||||.||||||||||||.|||||.||||||||||||||.||||||||.||||||
Sbjct  962  ACGGGGCCCTTTTCCAGCACGTCAGGAACTGGCTGGGCACTTGTCGGCTGCCCCTGACTGAGACCATCTCCGAG  1035

Query 1036  GTATATGAGCTCTGTGCCTTCCTAGACAAAAGGGACATCACCTACGAGCCAATCAAAGTTGCTTTGAAGACTCA  1109
            ||.|||||||||||.||||||||.|||||.|||||||||||||||||||||||.|||||.|||.||||||||||
Sbjct 1036  GTGTATGAGCTCTGCGCCTTCCTGGACAAGAGGGACATCACCTACGAGCCAATGAAAGTGGCTCTGAAGACTCA  1109

Query 1110  TCTGGAGCCAAGGACTTTGGCACCCATGGATGTGCTCA---ATGAGTGGACGGCAGAGATCACTGTGTATTCCC  1180
            |||||||||||||||||||...|||.||||||||||||   |.||||||||.||.|||.||||..|.||.||.|
Sbjct 1110  TCTGGAGCCAAGGACTTTGCTGCCCGTGGATGTGCTCAGTGAGGAGTGGACAGCTGAGGTCACGATATACTCAC  1183

Query 1181  CACAACAGATCATCAAAGTGTATGTTGGAAGCCACTGGTACGCAACCACCCTGCAGACACTGCTGAAGTATCCA  1254
            ||||.|||||||||||..|.||||||||||||||.|||||.|||||.|||||||||||.|||.|||||||.|||
Sbjct 1184  CACAGCAGATCATCAAGCTTTATGTTGGAAGCCATTGGTATGCAACGACCCTGCAGACCCTGATGAAGTACCCA  1257

Query 1255  GAACTGCTGTCCAACCCTCAGAGAGTGTACTGGATCACATATGGACAAACCCTGCTCATCCACGGGGATGGCCA  1328
            ||||||||.||||||.||||||||||||||||||||.|.||.|||||.|||.|||||||.||||||||.|||||
Sbjct 1258  GAACTGCTATCCAACACTCAGAGAGTGTACTGGATCGCCTACGGACAGACCTTGCTCATTCACGGGGACGGCCA  1331

Query 1329  GATGTTCCGACACATTCTCAACTTCCTGAGACTTGGCAAACTGTTTTTACCATCTGAATTTAAGGAATGGCCCC  1402
            .|||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||.|
Sbjct 1332  AATGTTCCGACACATTCTCAACTTCCTGAGACTTGGAAAACTGTTTTTACCATCAGAATTTAAGGAATGGCCTC  1405

Query 1403  TCTTCTGCCAGGAGGTGGAGGAATACCACATTCCATCCCTCTCAGAAGCCCTTGCACAATGTGAAGCATACAAG  1476
            ||||||||||||||||||||||.||.||.||||||.||||||||||||||||.||||||||.||||||||||||
Sbjct 1406  TCTTCTGCCAGGAGGTGGAGGAGTATCATATTCCAGCCCTCTCAGAAGCCCTGGCACAATGCGAAGCATACAAG  1479

Query 1477  TCATGGACTCAGGAGAAAGAATCTGAAAATGAAGAAGCTTTTTCCATCAGGAGGCTGCATGTGGTGACAGAAGG  1550
            ||||||||||||||||||||||||||||||||||||||||||.||||.||||.|||||||||||||||.|||||
Sbjct 1480  TCATGGACTCAGGAGAAAGAATCTGAAAATGAAGAAGCTTTTCCCATTAGGAAGCTGCATGTGGTGACCGAAGG  1553

Query 1551  GCCAGGGTCACTGGTGGAGTTCAGTAGAGACACTAAAGAAACCACAGCCTACATGCCTGTGGACTTCGAAGACT  1624
            |.|||||.||.|||..||||||||.|||||..|.||.|||||||||||||.||||||||||||||||.|.||.|
Sbjct 1554  GACAGGGCCAATGGCAGAGTTCAGCAGAGATGCCAAGGAAACCACAGCCTGCATGCCTGTGGACTTCCAGGAAT  1627

Query 1625  GCAGTGACAGGACTCCATGGAACAAGGCTAAGGGAAACCTGGTCAGGTCCAACCAGATGGATGAGGCTGAGCAG  1698
            ||||||||||||||||||||||||||||.||.||.||||||..||||||||.|||||||||.||||||||||||
Sbjct 1628  GCAGTGACAGGACTCCATGGAACAAGGCCAAAGGGAACCTGACCAGGTCCAGCCAGATGGAAGAGGCTGAGCAG  1701

Query 1699  TACACTCGGCCCATCCAGGTGTCCCTATGCCGAAATGCCAAGAGGGCTGGCAACCCTAGCACATACTCACACTG  1772
            ||.||.|||.|.||.|||||.|||||.|||.|||||||||||||||..|||||.||.|||||||||||||||||
Sbjct 1702  TATACCCGGACTATTCAGGTCTCCCTCTGCAGAAATGCCAAGAGGGGAGGCAATCCCAGCACATACTCACACTG  1775

Query 1773  CCGTGGCTTGTGTACCAATCCTGGACACTGGGGGAGCCACCCTGAGAGCCCCCCAAAGAAGAAATGCACCACAA  1846
            |..|||.||.|||.||||.||..||||.|||||..|.|||.|||||||.|||||.||||||||.||||||||.|
Sbjct 1776  CTCTGGTTTATGTGCCAACCCCAGACATTGGGGAGGTCACTCTGAGAGTCCCCCCAAGAAGAAGTGCACCACTA  1849

Query 1847  TCAACCTCACACAGAAATCTGAAACCAAAGACCCTCCCGCCACTCCCATGCAAAAACTCATCTCCCTGGTGAGA  1920
            |.|||||||||||||||.||||..|||||||||||||.|.|||.|||||||||||||||||.||..|.||.||.
Sbjct 1850  TAAACCTCACACAGAAACCTGATGCCAAAGACCCTCCTGTCACCCCCATGCAAAAACTCATATCTTTAGTCAGG  1923

Query 1921  GAATGGGACATGGTCAATTGCAAACAGTGGGAATTCCAGCCACTGACAGCCACACGGAGCAGCCCCTTGGAGGA  1994
            |||||||||||||||||.||.||||||||||||||||||||||||.|||||.|..||||||||.|..|||||||
Sbjct 1924  GAATGGGACATGGTCAACTGTAAACAGTGGGAATTCCAGCCACTGCCAGCCTCCAGGAGCAGCTCTGTGGAGGA  1997

Query 1995  GGCCACCCTGCAGCTCCCCTTGGGAAGCGAGGCTGCTTCCCAGCCCAGCACCTCAGCTGCCTGGAAAGCCCATT  2068
            |||.|.||||||..||||||.||||||.|||||||||.|.|||||..|.|||||||||||.||||||||.||||
Sbjct 1998  GGCTAGCCTGCATGTCCCCTCGGGAAGTGAGGCTGCTCCGCAGCCTGGTACCTCAGCTGCTTGGAAAGCTCATT  2071

Query 2069  CCACAGCCTCAGAGAAGGATCCAGGACCACAGGCAGGGGCTGGAGCTGGAGCGAAAGACAAGGGGCCAGAGCCA  2142
            |||.|.||||.|||||||||.|.||.||.|||.|.||..|.||||||||||.||||||||||||.|||||||||
Sbjct 2072  CCATAACCTCTGAGAAGGATGCTGGTCCCCAGACTGGACCCGGAGCTGGAGTGAAAGACAAGGGTCCAGAGCCA  2145

Query 2143  ACCTTCAAGCCATACTTACCCCCAAAAAGAGCTGGCACCCTGAAGGACTGGAGCAAGCAGAGGACCAAGGAGAG  2216
            |||||.|||||||||||.||..|||||||||||...|||||.|||||||||.|||||||||||.|||||||.||
Sbjct 2146  ACCTTTAAGCCATACTTCCCTACAAAAAGAGCTATTACCCTAAAGGACTGGGGCAAGCAGAGGCCCAAGGACAG  2219

Query 2217  AGAAAGCCCTGCCCCTGAGCAGCCTCTGCCCGAGGCCAGTGAGGTGGACAGCCTAGGGGTTATCCTCAAAGTGA  2290
            ||||||||||||.|||||||||||||||||..|.||.|..|.|...||||..|.|||||..||||||||||||.
Sbjct 2220  AGAAAGCCCTGCTCCTGAGCAGCCTCTGCCTAATGCTAACGGGACCGACAATCCAGGGGCCATCCTCAAAGTGG  2293

Query 2291  CTCACCCCCCCGTGGTGGGCAGCGATGGCTTCTGCATGTTCTTTGAGGACAGCATCATCTATACCACGGAGATG  2364
            ||||||||||.||||||||.|..|||||||.|||||||||||||||.||||||||.|||||.|||||..|.|||
Sbjct 2294  CTCACCCCCCTGTGGTGGGTAATGATGGCTCCTGCATGTTCTTTGAAGACAGCATTATCTACACCACCCAAATG  2367

Query 2365  GACAACCTCAGGCACACAACACCCACAGCCAGTCCCCAGCCCCAAGAAGTGACTTTCCTGAGTTTCTCTCTGTC  2438
            ||.|||.|||.|||.|||.|||.|||||||||.|||||.|..|.||||||||||||.|||||.|||||||||||
Sbjct 2368  GATAACATCAAGCATACATCACTCACAGCCAGCCCCCAACTTCGAGAAGTGACTTTTCTGAGCTTCTCTCTGTC  2441

Query 2439  CTGGGAAGAGATGTTTTATGCACAGAAATGTCACTGCTTCCTGGCTGACATCATCATGGATTCCATCAGGCAAA  2512
            ||||||.|||||||||||||||||||||||||||.||||||||.|.|||||||||.||||||||||||||||||
Sbjct 2442  CTGGGAGGAGATGTTTTATGCACAGAAATGTCACCGCTTCCTGACCGACATCATCTTGGATTCCATCAGGCAAA  2515

Query 2513  AGGACCCCAAAGCCATCACAGCCAAGGTGGTCTCCCTGGCCAATCGGCTGTGGACCCTGCACATCAGCCCCAAG  2586
            ||||.||||||||.|||||||||||||||||.||.||||||.|.||.||||||||.|||.||||||||||||||
Sbjct 2516  AGGATCCCAAAGCTATCACAGCCAAGGTGGTGTCTCTGGCCTACCGACTGTGGACACTGAACATCAGCCCCAAG  2589

Query 2587  CAGTTTGTGGTAGATTTGCTGGCCATCACCGGCTTCAAGGATGACCGGCACACCCAGGAGCGCCTGTACAGCTG  2660
            |||||.|||||.|||.|||||||||||.|.|||||||||||||||||||||||.||||||||.||||||||.||
Sbjct 2590  CAGTTCGTGGTGGATCTGCTGGCCATCGCTGGCTTCAAGGATGACCGGCACACTCAGGAGCGTCTGTACAGTTG  2663

Query 2661  GGTGGAGCTTACACTGCCCTTCGCCAGGAAATATGGCCGATGCATGGACCTGCTCATCCAGAGGGGCCTGTCTA  2734
            |||.|||||.||||||||.||||||||.|||||||||||.|||.||||||||||||||||||||||.|||||.|
Sbjct 2664  GGTAGAGCTCACACTGCCTTTCGCCAGAAAATATGGCCGTTGCGTGGACCTGCTCATCCAGAGGGGACTGTCCA  2737

Query 2735  GGTCTGTCTCTTACTCCATCCTGGGAAAGTACCTACAAGAGGAC  2778
            |||||||||||||.||..|||||||.|||||..||||.||||.|
Sbjct 2738  GGTCTGTCTCTTATTCAGTCCTGGGCAAGTATTTACACGAGGGC  2781

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