Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_05356
- Subject:
- NM_001284344.1
- Aligned Length:
- 2089
- Identities:
- 945
- Gaps:
- 992
Alignment
Query 1 ------ATGCAGCCTGCAATTCAAGTATGGTTTGGAGAAGATCTGCCTCTAAGTCCTCGGAGTCCTCTGACTCC 68
||||||||||||||.|||||.||||||||.||||||||||||||||||||..||.||||.||||||||
Sbjct 1 ATGACCATGCAGCCTGCAATCCAAGTGTGGTTTGGGGAAGATCTGCCTCTAAGTCCCAGGTGTCCCCTGACTCC 74
Query 69 CAGACACGGACCAGGATTGGCTAATGTTTGTCAGTACGATGAGTGGATAGCTGTGAGGCATGAAGCCACTTTGT 142
||||||.||.||.|||.|||||.|.|||||.|||||.||.|||||||||||.|||||.|||||||||||..||.
Sbjct 75 CAGACATGGCCCGGGACTGGCTGACGTTTGCCAGTATGACGAGTGGATAGCCGTGAGACATGAAGCCACCCTGC 148
Query 143 TGCCCATGCAAGAAGATCTGTCAATCTGGTTATCTGGTTTATTAGGTATTAAAGTTAAGGCAGAAAAATTATTG 216
||||.|||||.||||||||.||.||.|||||||||||.|||.|||||.||.|..|.||||||||||.|||||||
Sbjct 149 TGCCTATGCAGGAAGATCTCTCTATTTGGTTATCTGGCTTACTAGGTGTTGACATCAAGGCAGAAAGATTATTG 222
Query 217 GAAGAACTTGATAATGGAGTACTATTATGTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGCAACTC 290
|||||.||.|||||||||||.||.||.|||||.||.||..||||||||||.||||||||||||...|||.||||
Sbjct 223 GAAGAGCTCGATAATGGAGTGCTGTTGTGTCAGCTAATCAATGTTCTTCAGAACATGGTGAAAGGCTGCCACTC 296
Query 291 TGAAGAATCAGGGAATTTTCCAATGAGAAAAGTGCCCTGTAAGAAAGATGCTGCATCAGGTTCATTCTTTGCTC 364
|||.||..|||||||.||||||||||||||.|||||.|||||||||||||||||.||.||.|||||||||||..
Sbjct 297 TGACGAGCCAGGGAACTTTCCAATGAGAAAGGTGCCTTGTAAGAAAGATGCTGCTTCGGGCTCATTCTTTGCCA 370
Query 365 GGGACAATACCGCAAACTTCCTTCACTGGTGTAGGGACATTGGGGTTGATGAAACTTACCTCTTTGAATCTGAA 438
|.|||||.|||||.|||||.|||||||||||..|..||||.||.|||||.||.||||||||||||||.||.|||
Sbjct 371 GAGACAACACCGCCAACTTTCTTCACTGGTGCCGACACATCGGTGTTGACGAGACTTACCTCTTTGAGTCGGAA 444
Query 439 GGTTTAGTTTTGCACAAAGATCCAAGACAGGTGTATCTTTGTCTTCTTGAAATTGGTCGAATTGTGTCAAGATA 512
|||||||||||.||.||||||||.|||||||||||.||||||||||||||.||||||||.||||||||||||||
Sbjct 445 GGTTTAGTTTTACATAAAGATCCCAGACAGGTGTACCTTTGTCTTCTTGAGATTGGTCGGATTGTGTCAAGATA 518
Query 513 CGGGGTTGAGCCACCAGTGTTAGTAAAACTTGAGAAAGAAATTGAGTTAGAAGAGACTTTGCTTAATACTTCTG 586
|||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||.|||||||||.|.||.|
Sbjct 519 CGGAGTTGAGCCACCAGTATTAGTAAAACTTGAGAAAGAAATTGAGTTGGAAGAGACCTTGCTTAATGCCTCGG 592
Query 587 GGCCTGAAGATTCCATCAGCATTCCAAAATCATGCTGTCGGCATGAAGAGCTACATGAAGCTGTTAAACATATT 660
|||.||||||.|||||||||||.||.|||||.|||||||.|||.|||||.||||||||||||||||||||.|||
Sbjct 593 GGCTTGAAGAGTCCATCAGCATCCCCAAATCCTGCTGTCAGCAAGAAGAACTACATGAAGCTGTTAAACACATT 666
Query 661 GCTGAGGACCCTCCTTGTAGTTGTTCTCATCGATTTTCTATTGAGTATTTATCTGAAGGACGGTACCGACTAGG 734
||.|||||||||||||||||.||.||||||||.|||||||||||.||.|||||.|||||.||||||||.|||||
Sbjct 667 GCGGAGGACCCTCCTTGTAGCTGCTCTCATCGGTTTTCTATTGAATACTTATCCGAAGGGCGGTACCGGCTAGG 740
Query 735 GGATAAAATACTCTTTATAAGAATGCTTCATGGAAAACATGTCATGGTTCGCGTTGGTGGAGGCTGGGATACTC 808
|||.|||||.|||||||||||.|||||||||||||||||.||.|||||.|||||.|||||||||||||||||||
Sbjct 741 GGAGAAAATTCTCTTTATAAGGATGCTTCATGGAAAACACGTTATGGTCCGCGTCGGTGGAGGCTGGGATACTC 814
Query 809 TTCAAGGATTTTTGCTTAAATATGACCCCTGTCGAATATTACAGTTTGCCACACTAGAACAAAAAATTTTAGCA 882
|.||.|||||||||||.||.||||||||||||||||||.|.||||||||.||||||||||||||||||||||||
Sbjct 815 TACAGGGATTTTTGCTGAAGTATGACCCCTGTCGAATACTGCAGTTTGCTACACTAGAACAAAAAATTTTAGCA 888
Query 883 TTTCAAAAAGGAGTTTCTAATGAAAGTGTACCTGATTCGCCTGCCAGAACACCTCAGCCTCCTGAAATGAATCC 956
||||||||||||||||||||||||||.||.||.|||||||||||||||||.|||||||||||.||||||||.||
Sbjct 889 TTTCAAAAAGGAGTTTCTAATGAAAGCGTGCCAGATTCGCCTGCCAGAACGCCTCAGCCTCCAGAAATGAACCC 962
Query 957 TTTGTCAGCAGTTAACATGTTTCAGAAACAAAATTCAAAACCCAGCGTGCCAGTTAGTATTCCAAAAAGCAAAG 1030
|||||||||||||||.|||||||||||||||||||.||.|||..||...|||||.|||.||||.||.|.|||.|
Sbjct 963 TTTGTCAGCAGTTAATATGTTTCAGAAACAAAATTTAAGACCTGGCACACCAGTGAGTGTTCCGAAGAACAAGG 1036
Query 1031 AAAAACAGGGACGTCCACCAGGTGCATTGGTGCCAGCATCTTCACTGAAAGGAGGTAATCTGGGCTCTATG-TC 1103
|.|||||||.|||||.||||||||||....||||.|||||.|||.|.||||.| ||||.||| || ||
Sbjct 1037 AGAAACAGGTACGTCTACCAGGTGCACGTCTGCCTGCATCGTCAGTAAAAGCA---AATCAGGG-----TGATC 1102
Query 1104 AGTCCGTTCTAAATTGCCAAATTCTCCAGCAGCATCTTCTCATCCCAAGCTCAAGTCTTCAAAAGGCATAACGA 1177
|.
Sbjct 1103 AA------------------------------------------------------------------------ 1104
Query 1178 AGAAACCGCAGGCTCCTTCAAACAATGCATCATCTTCACTTGCTTCATTAAATCCAGTAGGTAAAAACACTTCT 1251
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1252 TCACCAGCTTTACCAAGAACTGCACCTTGTATATCTGAGTCACCGAGAAAATGTATTTCATCCCCCAATACCCC 1325
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1326 CAAGGCCAAGGTTATTCCAGCCCAGAATTCAGCAGATCTGCCCGAGTCCACACTTTTGCCAAATAAGTGTTCAG 1399
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1400 GAAAAACTCAACCTAAGTATTTGAAACATAATCATATTTCTTCCAGAGATAATGCAGTATCTCACTTAGCTGCA 1473
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1474 CATTCAAATTCATCCTCAAAATGTCCCAAGCTGCCTAAAGCAAATATACCTGTAAGACCTAAACCTTCTTTCCA 1547
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1548 GTCCTCTGCAAAAATGACAAAAACCAGTTCCAAAACCATAGCCACGGGTCTAGGAACACAGTCTCAACCATCCG 1621
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1622 ATGGAGCCCCACAAGCAAAGCCAGTCCCAGCACAGAAACTTAAATCGGCCTTGAATTTAAATCAGCCAGTTTCT 1695
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1696 GTGTCCTCAGTTTCTCCTGTAAAAGCCACACAGAAATCAAAAGATAAGAATATAGTTTCAGCTACCAAAAAGCA 1769
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1770 GCCTCAGAATAAAAGTGCATTTCAGAAGACAGGACCCAGCTCCTTGAAGTCTCCTGGCCGTACCCCACTGTCCA 1843
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1844 TCGTGAGCCTACCCCAGTCTTCTACCAAAACACAAACTGCACCGAAGTCAGCACAGACTGTCGCTAAGAGCCAG 1917
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1918 CATTCAACTAAAGGGCCTCCCAGAAGTGGCAAAACCCCAGCTTCAATCAGGAAACCACCCTCATCTGTTAAGGA 1991
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 1992 TGCAGATAGTGGAGATAAAAAACCTACTGCAAAGAAAAAGGAAGATGATGACCATTATTTTGTCATGACTGGAA 2065
Sbjct 1105 -------------------------------------------------------------------------- 1104
Query 2066 GTAAGAAACCTAGAAAA 2082
Sbjct 1105 ----------------- 1104
