Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_05574
- Subject:
- NR_145834.2
- Aligned Length:
- 6845
- Identities:
- 284
- Gaps:
- 6560
Alignment
Query 1 -------------------------------ATGTCTGCAACTCGAGCCAAGAAAGTGAAGATGGCCACCAAAT 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCGCTGCTGCCGCCGCTAAGGGAGAGGAGCATGTCTGCAACTCGAGCCAAGAAAGTGAAGATGGCCACCAAAT 74
Query 44 CATGCCCCGAGTGCGACCAACAGGTTCCTGTTGCATGTAAATCATGTCCTTGTGGTTACATATTTATTAGCAGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CATGCCCCGAGTGCGACCAACAGGTTCCTGTTGCATGTAAATCATGTCCTTGTGGTTACATATTTATTAGCAGA 148
Query 118 AAACTTTTAAATGCAAAACACTCAGAGAAATCACCACCTTCTACAGAAAACAAGCATGAGGCCAAGAGGAGGCG 191
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AAACTTTTAAATGCAAAACACTCAGAGAAATCACCACCTTCTACAG---------------------------- 194
Query 192 AACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACAGTAAATAAAGATTTAGAAAACAGAAAGAGGTCTCGAA 265
Sbjct 195 -------------------------------------------------------------------------- 194
Query 266 GTAACAGCCATTCAGATCATATCAGACGAGGAAGAGGAAGACCTAAAAGTGCATCTGCCAAAAAACATGAGGAA 339
|||||
Sbjct 195 GTAAC--------------------------------------------------------------------- 199
Query 340 GAAAGAGAGAAACAGGAAAAGGAAATTGACATCTATGCTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGT 413
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ------TAGAAACAGGAAAAGGAAATTGACATCTATGCTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGT 267
Query 414 CGCCTTGGCAGAAATAAATAGAAAAATTATCAATCAAAGACTTATTCTC------------------------- 462
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CGCCTTGGCAGAAATAAATAGAAAAATTATCAATCAAAGACTTATTCTCTGATACTTGTTTGCAAAATCTGCTG 341
Query 463 -------------------------------------------------------------------------- 462
Sbjct 342 AAACTTCTGTCAGGATAACATCAGCAAATTCTCAAACAGTTATGGACTCTCAGGAGCATTCTGACTGCATCAAT 415
Query 463 -------------------------------------------------------------------------- 462
Sbjct 416 AAGGGCCATCGATTGTTTCTTTCTCGCCTGTCGTTTAGCCTGTGCCACACTTCGGGAGCAAAGCTGTGTAGGCT 489
Query 463 -------------------------------------------------------------------------- 462
Sbjct 490 TGGACTGTTCTGGGATTTCCTTGTTTACCAAGGAGTATTGTCAGTGTTTTGTGTTTGGGATATAAGTAAGTGTA 563
Query 463 -------------------------------------------------------------------------- 462
Sbjct 564 TTTGCCAACAACAAAAAAAAACCAACAAAAATGCTGGATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGG 637
Query 463 -------------------------------------------------------------------------- 462
Sbjct 638 TAGGTATGAAAACTAGGGTAATAAGATGCTTGATTGTTTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATA 711
Query 463 -------------------------------------------------------------------------- 462
Sbjct 712 CTGTCAGAAAGAGTGATTTTTAAAAATATATATTTCAGATTTTCAGTGCTAACAGATTGCATATATACAGTTCA 785
Query 463 -------------------------------------------------------------------------- 462
Sbjct 786 TTTACTTTTATTAAATTGGCAATCGATATTTTATTGAATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTT 859
Query 463 -------------------------------------------------------------------------- 462
Sbjct 860 AAATTGATTTTTTTTCTTGGCCTTTATTTTTATTACTTAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGA 933
Query 463 -------------------------------------------------------------------------- 462
Sbjct 934 CAGTTTGAAGTTTGGGTGCTATATGAAGAAAAACATTTAATGATATACTCAGATATAAACACCTTGTTTTCTTG 1007
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1008 AATGTAATTTATTTATTAGCTAAAAAAAAAAAACAAACTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAA 1081
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1082 ATATATTTATTACATGCAAAATATTTCTTAGCCACTTTTAAGCAGTAATGTTTTATCTGAATGGATATTTGTTT 1155
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1156 CTATATCCTGATAATTATTTAAATTGTTACTTTCAATCTGGAAGAAAAAATAAACCTTAATATTGAAACTAAGT 1229
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1230 AGATTAAATAGTGTGATAAAAGTTTTTTGTTCTGGTGAAGTTTGTGAAATATATTTAAATTCTTAATTTTTCTA 1303
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1304 GTGTTAAGTCATAATCGTTTATAGTTGATTTATATTAAATGCTTTTGCATTTTGGCATATCAATTTAATGATTA 1377
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1378 ACATATTCAAACTTGGTAATCACTCCCCTTATTTTCAGTCGCTCTTCCCCCAATCTGTTTAGAAATCCTTTTAA 1451
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1452 AGCCTTCTTACAGAAGATAGTCATCAGTTAGATTTAGCCCCCTTTTAAGAGAATCTCCCTTTCAATTTTAGCCG 1525
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1526 TAACATTATCAATTTCAGACTTCATCCTGCATCTCCCATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCC 1599
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1600 TACTTTATTTAAATGGTAACCAGCAGAGGGAGCTTAAGAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGA 1673
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1674 TTCCTTTTCCTTTAATCCCTGTATCTATCTGCAGGTACTACTGCAACTATTTTGTATGCATTTTATTTATTTAT 1747
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1748 TTAGGAGACAGAGTCTTGCTCGGTCGCCCAGGCTGGAGTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGC 1821
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1822 CTCCTGGGTTCAAGTGATTCTTATGCCTCAGCCTCCTGAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTG 1895
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1896 GCTGTTTTTTTTTTTGTATTTTTTAGTACAGATGGGGTCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGG 1969
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1970 CCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGT 2043
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2044 GTGCGTTTTAGAGTCTTAACTAGTAGTTTCCCCAATAATGTAATGTGATTTTATCTTTGAAACATACTGTAAGG 2117
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2118 AAACTTTTGATTTTAAGTAAAAAAGCTTAAAAATGATTAATATCTAAAAATGCTTGTATACATATATATGTCCT 2191
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2192 CAGAAAAAGCAAGAACAGCTTGTGGAATAAGCACGTCTTTAAGGAATTATCGATGTCAGAGTCTATCCATTTAA 2265
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2266 AGCTGAAGACCATTACAGGAAAGTCATGTTAAAATATTCATTGGATATGGTAAAGGAGGTACTGGTGGCTGGGC 2339
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2340 TGGAGCTTGCCGTATAGAAAAGTAATTACTTCAGATCTCATAATGTTAAATTATTGGCTTATTTAAAAATTTCC 2413
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2414 GTGGCAGAGAGGCAAATTAGGTTTCCTCTGTGACATAACCTATTTAACCAATTTTTCAAAAAATTGTACTCTAT 2487
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2488 GAGCTTTCTTGTTATAAAGCTAAAAAATTTAATTTGTCTAGGCATGTTGTAATGGTCCCAGAAAATATTACTTT 2561
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2562 GTCACTGGTGTCAGAGAAACCTCTGTCATCAGCAGATGTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCA 2635
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2636 AAATTTGTTCTGCTCTGATATCTATAAATGATATGATTATTCAAAATACCTTGAAATGATTCCACAATTAGATT 2709
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2710 AGGTCTGTTGAAGATAACTTATTCTTAAATATGAGTAAGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCT 2783
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2784 GCCTCAACTCCATGGTATTCCAAAATGTTTTTGTGGGCACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTT 2857
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2858 TTAGAAATGAACATTTCTTAGATTTTCATGGGTATTTTTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAG 2931
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2932 GGAAATTGTGCAAATTATTTCTTGTGTAGTAATCAGTGGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAG 3005
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3006 AAAATTTAAAATTGCAAATGACCTGAAAATTTAGCCAGTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAA 3079
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3080 GAAAAAAAAAAAAAAGGTCAGTATGACCTCTGAGTTGCTTCCTAAAAGTAATCAGATAGTGTTCTCCCTCAGAT 3153
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3154 AAGATTTCAAATTGAAAAGTATTTGACTTCTTTAACTCTAGTAATTGCACTTGATTCTCTAATTCTGATCATTA 3227
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3228 AAATGACTTGGCAATATTTAATTTTGGCTTGCCTTTCAATCTGCATGTTTGTCTTAAATTTAGAAAAATTAAGC 3301
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3302 TCTTTACTTACTTTTATATAAAGTATTAATTGGCCAGGCATGGTGGCTTACACCTGTAATCCCAACACTTTGGG 3375
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3376 AGGCCAAGGCAGGAGAGTTGTTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCAACATGATGAGACCGCGTCTCT 3449
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3450 ACAAAAAGTAAAATTAGCTGGGTGTGGTGCTTCCAGCTACTAGGCAGCTGAGGCTAAAGGATCACTTGAGCCCA 3523
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3524 GGAGTTCGAGGCTGCAGTGAGTGATGATCTTGCCACTGCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTG 3597
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3598 TGTGAAAAAAGTATTGAATTTGTTTGATTCCACTTTCAAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAA 3671
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3672 TTGTGTTCTTCTCTAAAACATTTTGTCCGTCATTCTTTGAAACTCATTCTTAATTATTTCCACTTTACCTTCTA 3745
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3746 GTTTGGTTTGATGCCTTATATTCTTGCTAGTTAAAAGCATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTT 3819
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3820 AAGGCATATTGTTGTTAACAAATCTCTTATTTAAGTTAATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTT 3893
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3894 TACTACATGACAAGCTTCATTTTTACATTTGGAAGTACATGTATATATGTTTATATATTTTTATTCTCAGGATC 3967
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3968 TATTTTCTAGGGAACTATTTTTTTAAATTATTCTTTTGTGCTGCCTTAACCCATTTATTATAGTTTGAATATTA 4041
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4042 GTAGTACTTACTACTCAAAGATTACAACTATACTAATAACTATCCTAACATACAAAGCAGACTCTCCAGGATTA 4115
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4116 AAAGTATGAGACATATAACAGAGTCTGGAATAGAATAATTCTTTTTACCCCAGTCAAGTATTTGCCTTTTGCAT 4189
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4190 TATTAAGGAATCTGTTTTGTTCTTTTATTGATAATTTCTATATTTTTTTCTTTGCCTTATTGCACTGGTTGGGA 4263
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4264 CTTTTTGCCTTGATCCAGTTGTAGGGGGGAAACATTCAGTCATTAAGCATTAAATAACTTTGTTGTTGTTGTGG 4337
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4338 GCTTGAAAAAATACCCTTTAGTAGATTGAGGGTAGACTCTTTTATTTCTGCTTGTTGGAAGTTTTCTGTCAGGA 4411
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4412 ACAGATGTTGAATTTTGTCAGATGCTTTTTCTGCATAATTGATAGGACCTTTTTTCTCCCCTTTAGAATGTTCA 4485
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4486 TATGGTGAAACATACTGATAGCTTTTCTTTTCTTTTTTTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGG 4559
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4560 AGTGCAATGGTGCGATCTTGGCTCACTGCACCCTCTGCCTCTTGGGTTCAAGCTTCCCTCACCAGCCTCCCAAG 4633
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4634 TACCTGGGTATACAGGTGTGCATCACCATGCCCGGCTAATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCAT 4707
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4708 GTTGGCCAGGCTGGTCTTCAACTCCTGACTCAGCCTCCCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCA 4781
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4782 GGCTGGAGGGCAGTGGTGTGATCTTGGCTCAATGCAACCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTC 4855
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4856 CTGCCTTAGCCTCCTGAGTAGCTGGAATTACAGGCGCACGCCACTACACCCAGCTTCTTTTTGTATTTTTAGTA 4929
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4930 GAGATGGAGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGG 5003
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5004 CATGAGCCACCGTGCCCGGCTGCATTTCTCTTTTGTAAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTT 5077
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5078 CTGTTTTAAGTTTCATTAATTTCTGATCTTTAGTATTTTCTCCTTTCTTTGCTTTGGGCTTATTTGCTCCCTTT 5151
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5152 TCTAGCTTATTGTGGCGGAAGCTCAGATCATTGATTTTAAAATTTACTTATTTATTTATTTATTTATTTAATTC 5225
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5226 AACACTGATCAGAAGGCTTTTTGTGCTTTTCTAAAAAAAGCATTTAATGCTATAAATTTCCCATTTGCTTTATC 5299
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5300 TCACAAATTTTATTGTGTTGTAATTTTGTGTTCAATTTAGAATATTCTGATTTTTCTTGGTATTACTATAATTT 5373
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5374 TCAAATATTTAGAGTTTTTTTCAGTTATCTTTCTGTTACTGATTGTAATTTATTGTTTTTTAAAATTATAGTTC 5447
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5448 TTTGAATAGTTTTGCAGTATTTGCTCTAGGGATTACTATAAACATACTTCACTTTTTACAGTTCACTTAGAAGT 5521
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5522 CAATATTTTACCAGTTCAAGTGGAATGTAGAAAAATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTA 5595
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5596 TGTTATAATTTTCTTATAAATCATAAGACTTGGCTGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGC 5669
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5670 CGAGGCGAGCAGATTGCTTAAGTCCAGGAGTTCGAGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAA 5743
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5744 AAAATACACAAAATTAGCTAGGCGTGGTAGCATGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGG 5817
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5818 ATTACTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAG 5891
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5892 CTAGACACTGTGTCTCAAAAAATAAAAATAAAAAATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTAT 5965
Query 463 -------------------------------------------------------------------------- 462
Sbjct 5966 CATAGATATTTTTAAGAACCCAAGAGGAAAACAGTCTATCACATTTACCACAATATTTATCATTTGTATTAATC 6039
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6040 TTCCTTAATTCTTGATGTTCCAAGTTTACATAGGTATCAGTCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGG 6113
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6114 TCTGTTGACATTTAATTCTCTTATTTTTTCTTCATCTGAGAATGTCTTTATTTTGCCTTAATTCATGAAAGATA 6187
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6188 TTTTTGCTGGATATAAACTACTGTGTTGACAGTTCTTTCAGCCTCCATGGTTTCTGATGAGAAATGTGCAGCCA 6261
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6262 TTAAAGTAATATTTCCCCTGTATGAAACATGTTATTTTTCTCTGAGTATTTTCAGGAATCTTTGTCTTTGGTTT 6335
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6336 TTATTGGTTTGATTATGATGTGCCCGGGTGTTTGAATTTATTCTCTTTGGGATTTGTTGAGCTTAAATGTGTAA 6409
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6410 GTTTATGCCTTTCATCAGATTATGTAAAGTTTTAAACCATTCAGATATTTTCTGCTCTACTTTCTCCTCCCTCT 6483
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6484 TAGGCTCCAGTGATGCAAGTGTTAGACTCTTTGGTATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTT 6557
Query 463 -------------------------------------------------------------------------- 462
Sbjct 6558 ATTTTAATAAATCATTTCAGTTAACAAAATCATATATTGTATGCAGCATGATGTTTCAATATGTATGTTCACAT 6631
Query 463 ------------------------------------- 462
Sbjct 6632 TGTAGGATGTCTAAAGTAAAGATAATGAACATATGCA 6668
