Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_05771
- Subject:
- XR_001754793.2
- Aligned Length:
- 5340
- Identities:
- 2028
- Gaps:
- 3292
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGGCAGCCCCACCCTAACGAGAAGTGAAGGGGCTGGGCATGCTGTTTCCAGTGCTTTCATGAGATGCTGCTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCTGGCGGTCGGGCCTGATGTCTCGTTGTTCCACCTGTGACCAAGGGGTCCCTCTGGAAATGTGTGTGTACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACACATGCCCTGGTGGCTCTTGTCTGATCCATGTCCAGGTTATTCCTGCCTGACCGTCACTCGTGCCAGGAGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAACACAAATTCAGGCACAAATTCAGTACACCACACAATGGGGGAAACATGTTCAAAGATTTTTACTTACAGGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGAGCAGGGAGGGTGCCATGAGTCAGGAGGGCAGTCCTCTGTCCCTGGGTCATGCAAGCAGGAACAAAGGGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGGCAGAGAGAGAGAGCACTGCAGCCAACCAGCAGAACAAATAAGGGAGTAGGGTGGGGTCACTTGAAGTGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGGGCAGGTGCCTGAGTGAAAGATGCCTCTAGGTTCTCATCTCTGGTACTGGCTTGAGCCACTGGGTGTGGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAACTACAAAGTGTCAGGGGTGGCTGAACTCTGCCGCTACTAGGAGAAAGTGCAGCTCATATTCCAGATAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGAGGCAATAGAAAATGAAAAGAATTCACTATGCTTACGCAGAGTGTGTCTGGACACACACAAATTTAAGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAATAAGAATTGCTTAATATGGCATAATTTCCTTAGGTGCCATGTGCAGTTGTCACAAGCATTGCACTAATTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATAATGAATTAGAAAGTGGATGTTGGTCATTATTAGGAAAAGGTACTTTGTTACACGAGACAGTAATTGCATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTGGCAAGAGAAAGAATCTGACTAATTAATTTGTCTTTTTTTTCTTTTGCCTATGAGTGCTTCTTCTGCTTGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCCTCCCCATAATCGGACTCCTTCCAAGACAGCCTAATCTTCAGGGCATTTGGATGCAGCTGCCTTTTGTTCCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGACACAGGCCATCTCAGGGGAGGTATCTCCCTGGGGCCTGAACAGCGTTTTTCTAGACAAGAGGAGGCTGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCTGTGGGTTCTGCTTTGCCAGCCCTGAATGCTGGATCCCGAGTGGCAGAGGCACCAAGTGCTGTATGATGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGTATGTGATGTGTGTGCATGTACATGTGTGTGATGTGTGTCCCTGCTCGCCCCAGGCTGGCCATGGTACTGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTAGTCACAGACTGGCTGTGCTGATCAAGCCAGGCACAGTGGAAAATGGGAAGATGTTGGCGTTTGCCCCTCCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTGGCTGTGTGTCATTCACCTGGGGCATGAGCTGTGCCCCTGCTCTGCAGTAATGAACAAGGCAGGTCAGCATT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTCCGAGACACGTGAGTTAAGAGAGGAGGAAGAGCACTCTCTGGGGGCGGGGGGATCCATTTGTCAGTGGCCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCAGTTTCCTGTCCCAGGGATTTCACTGGTGACATCCTGACCACTCACCTGCACTTTATATGGAGCTGTTTTCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCAGCTGGCGTCTGCTGAGCCTCTGCATTGTGTTGTGTGGTAGCCTGTTACTTTTTGCAGTTTTATTTTCTAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTGTACTCTTTTATTGATAGATTTTTTGTATTAGGATTTCCATTTAAACAGGACTTTGGTACGTCTGCTGTGGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGATTTGTTTCCCTAGAAGATTCACGGCTGTCGTTCTCTCCCCTCTGCTCGTGGTGTTTTACTGTGACTGCGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAACGGTTAGCTGTCACATGTCATTCTCTGGGTGGTGTGCTCTGAAGTCATTGTGGTGTGTGGGCCCCTTCAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTAGTTCTGCCTAACTGCGGCATGATGAATGGGCCCGAGGCAGAGGAGGAGGCTCCCTCGTCGGTAGGGGCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTTGTCGCAGCTGCCGGCACACGGAAGTGAGTCGGTGTGCTGCTGCCCCGAGTGACTGAGGGACAGAATGAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTGGGGCCGGCCGGACTGGCATTGGCGTGTCTGCATGGCGTCGTCCACCACTGGGCCTTTGCACATGGGGACCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTTCAGCATCATGGGGCGTCGGTATAAAAGGAGGCGCAAGAAGCGCTCTGAGAGGAAAGACAGAAACAGTCTC 2072
Query 1 ---------------------------------ATGGATATAGAAGATGAAGAAAACATGAGTTCCAGCAGCAC 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAACATGAGTTCCAGCAGCAC 2146
Query 42 TGATGTGAAGGAAAACCGCAATCTGGACAACGTGTCCCCCAAGGATGGCAGCACACCTGGGCCTGGCGAGGGCT 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGATGTGAAGGAAAACCGCAATCTGGACAACGTGTCCCCCAAGGATGGCAGCACACCTGGGCCTGGCGAGGGCT 2220
Query 116 CTCAGCTCTCCAATGGGGGTGGTGGTGGCCCCGGCAGAAAGCGGCCCCTGGAGGAGGGCAGCAATGGCCACTCC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CTCAGCTCTCCAATGGGGGTGGTGGTGGCCCCGGCAGAAAGCGGCCCCTGGAGGAGGGCAGCAATGGCCACTCC 2294
Query 190 AAGTACCGCCTGAAGAAAAGGAGGAAAACACCAGGGCCCGTCCTCCCCAAGAACGCCCTGATGCAGCTGAATGA 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AAGTACCGCCTGAAGAAAAGGAGGAAAACACCAGGGCCCGTCCTCCCCAAGAACGCCCTGATGCAGCTGAATGA 2368
Query 264 GATCAAGCCTGGTTTGCAGTACACACTCCTGTCCCAGACTGGGCCCGTGCACGCGCCTTTGTTTGTCATGTCTG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GATCAAGCCTGGTTTGCAGTACACACTCCTGTCCCAGACTGGGCCCGTGCACGCGCCTTTGTTTGTCATGTCTG 2442
Query 338 TGGAGGTGAATGGCCAGGTTTTTGAGGGCTCTGGTCCCACAAAGAAAAAGGCAAAACTCCATGCTGCTGAGAAG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TGGAGGTGAATGGCCAGGTTTTTGAGGGCTCTGGTCCCACAAAGAAAAAGGCAAAACTCCATGCTGCTGAGAAG 2516
Query 412 GCCTTGAGGTCTTTCGTTCAGTTTCCTAATGCCTCTGAGGCCCACCTGGCCATGGGGAGGACCCTGTCTGTCAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GCCTTGAGGTCTTTCGTTCAGTTTCCTAATGCCTCTGAGGCCCACCTGGCCATGGGGAGGACCCTGTCTGTCAA 2590
Query 486 CACGGACTTCACATCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGTTTTGAAACTCCTGACAAGGCGG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CACGGACTTCACATCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGTTTTGAAACTCCTGACAAGGCGG 2664
Query 560 AGCCTCCCTTTTACGTGGGCTCCAATGGGGATGACTCCTTCAGTTCCAGCGGGGACCTCAGCTTGTCTGCTTCC 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 AGCCTCCCTTTTACGTGGGCTCCAATGGGGATGACTCCTTCAGTTCCAGCGGGGACCTCAGCTTGTCTGCTTCC 2738
Query 634 CCGGTGCCTGCCAGCCTAGCCCAGCCTCCTCTCCCTGCCTTACCACCATTCCCACCCCCGAGTGGGAAGAATCC 707
|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 2739 CCGGTGCCTGCCAGCCTAGCCCAGCCTCCTCTCCCTGTCTTACCACCATTCCCACCCCCGAGTGGGAAGAATCC 2812
Query 708 CGTGATGATCTTGAACGAACTGCGCCCAGGACTCAAGTATGACTTCCTCTCCGAGAGCGGGGAGAGCCATGCCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 CGTGATGATCTTGAACGAACTGCGCCCAGGACTCAAGTATGACTTCCTCTCCGAGAGCGGGGAGAGCCATGCCA 2886
Query 782 AGAGCTTCGTCATGTCTGTGGTCGTGGATGGTCAGTTCTTTGAAGGCTCGGGGAGAAACAAGAAGCTTGCCAAG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 AGAGCTTCGTCATGTCTGTGGTCGTGGATGGTCAGTTCTTTGAAGGCTCGGGGAGAAACAAGAAGCTTGCCAAG 2960
Query 856 GCCCGGGCTGCGCAGTCTGCCCTGGCCGCCATTTTTAACTTGCACTTGGATCAGACGCCATCTCGCCAGCCTAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 GCCCGGGCTGCGCAGTCTGCCCTGGCCGCCATTTTTAACTTGCACTTGGATCAGACGCCATCTCGCCAGCCTAT 3034
Query 930 TCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAGGTTTTAGCTGACGCTGTCTCACGCCTGGTCCTGGGTAAGT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 TCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAGGTTTTAGCTGACGCTGTCTCACGCCTGGTCCTGGGTAAGT 3108
Query 1004 TTGGTGACCTGACCGACAACTTCTCCTCCCCTCACGCTCGCAGAAAAGTGCTGGCTGGAGTCGTCATGACAACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 TTGGTGACCTGACCGACAACTTCTCCTCCCCTCACGCTCGCAGAAAAGTGCTGGCTGGAGTCGTCATGACAACA 3182
Query 1078 GGCACAGATGTTAAAGATGCCAAGGTGATAAGTGTTTCTACAGGAACAAAATGTATTAATGGTGAATACATGAG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GGCACAGATGTTAAAGATGCCAAGGTGATAAGTGTTTCTACAGGAACAAAATGTATTAATGGTGAATACATGAG 3256
Query 1152 TGATCGTGGCCTTGCATTAAATGACTGCCATGCAGAAATAATATCTCGGAGATCCTTGCTCAGATTTCTTTATA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TGATCGTGGCCTTGCATTAAATGACTGCCATGCAGAAATAATATCTCGGAGATCCTTGCTCAGATTTCTTTATA 3330
Query 1226 CACAACTTGAGCTTTACTTAAATAACAAAGATGATCAAAAAAGATCCATCTTTCAGAAATCAGAGCGAGGGGGG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CACAACTTGAGCTTTACTTAAATAACAAAGATGATCAAAAAAGATCCATCTTTCAGAAATCAGAGCGAGGGGGG 3404
Query 1300 TTTAGGCTGAAGGAGAATGTCCAGTTTCATCTGTACATCAGCACCTCTCCCTGTGGAGATGCCAGAATCTTCTC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TTTAGGCTGAAGGAGAATGTCCAGTTTCATCTGTACATCAGCACCTCTCCCTGTGGAGATGCCAGAATCTTCTC 3478
Query 1374 ACCACATGAGCCAATCCTGGA----------------------------------------------------- 1394
|||||||||||||||||||||
Sbjct 3479 ACCACATGAGCCAATCCTGGAAGAAGCAGATAAACACTAGTGAAAAGTGAAACCACTATTGTGATCATATTTTT 3552
Query 1395 -------------------------------------------------------------------------- 1394
Sbjct 3553 TTCCATCCTTCTTTACATTTGAGGGTCTCGCTCTTACACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCAC 3626
Query 1395 -------------------------------------------------------------------AGAACCA 1401
|||||||
Sbjct 3627 TGCAGCCTCGACCTCCTGGGCTCTTAAGCGATCCTTCCACCTCAACCTTCCAAGGAGCTGGGACTACAGAACCA 3700
Query 1402 GCAGATAGACACCCAAATCGTAAAGCAAGAGGACAGCTACGGACCAAAATAGAGTCTGGTGAGGGGACGATTCC 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GCAGATAGACACCCAAATCGTAAAGCAAGAGGACAGCTACGGACCAAAATAGAGTCTGGTGAGGGGACGATTCC 3774
Query 1476 AGTGCGCTCCAATGCGAGCATCCAAACGTGGGACGGGGTGCTGCAAGGGGAGCGGCTGCTCACCATGTCCTGCA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 AGTGCGCTCCAATGCGAGCATCCAAACGTGGGACGGGGTGCTGCAAGGGGAGCGGCTGCTCACCATGTCCTGCA 3848
Query 1550 GTGACAAGATTGCACGCTGGAACGTGGTGGGCATCCAGGGATCCCTGCTCAGCATTTTCGTGGAGCCCATTTAC 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GTGACAAGATTGCACGCTGGAACGTGGTGGGCATCCAGGGATCCCTGCTCAGCATTTTCGTGGAGCCCATTTAC 3922
Query 1624 TTCTCGAGCATCATCCTGGGCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTACCAGCGGATCTCCAA 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 TTCTCGAGCATCATCCTGGGCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTACCAGCGGATCTCCAA 3996
Query 1698 CATAGAGGACCTGCCACCTCTCTACACCCTCAACAAGCCTTTGCTCAGTGGCATCAGCAATGCAGAAGCACGGC 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CATAGAGGACCTGCCACCTCTCTACACCCTCAACAAGCCTTTGCTCAGTGGCATCAGCAATGCAGAAGCACGGC 4070
Query 1772 AGCCAGGGAAGGCCCCCAACTTCAGTGTCAACTGGACGGTAGGCGACTCCGCTATTGAGGTCATCAACGCCACG 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 AGCCAGGGAAGGCCCCCAACTTCAGTGTCAACTGGACGGTAGGCGACTCCGCTATTGAGGTCATCAACGCCACG 4144
Query 1846 ACTGGGAAGGATGAGCTGGGCCGCGCGTCCCGCCTGTGTAAGCACGCGTTGTACTGTCGCTGGATGCGTGTGCA 1919
|||||||||||||||||||||||||||||||||||||
Sbjct 4145 ACTGGGAAGGATGAGCTGGGCCGCGCGTCCCGCCTGT------------------------------------- 4181
Query 1920 CGGCAAGGTTCCCTCCCACTTACTACGCTCCAAGATTACCAAACCCAACGTGTACCATGAGTCCAAGCTGGCGG 1993
|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 4182 -------GTTCCCTCCCACTTACTACGCTCCAAGATTACCAAGCCCAACGTGTACCATGAGTCCAAGCTGGCGG 4248
Query 1994 CAAAGGAGTACCAGGCCGCCAAGG----------------CG----CGTC-------TGTTCACAGCCTTCATC 2040
|||||||||||||||||||||||| || |||| |||.||||| |||
Sbjct 4249 CAAAGGAGTACCAGGCCGCCAAGGTACACTGAGGAGGGGACGGCTCCGTCTTCACATTGTGCACAG-----ATC 4317
Query 2041 AAGGCGGGGCTGGG---GGC----CTGGGTGGAGA-AGCCCA-CCGAGCAGGACCAGTTCTC-------ACTCA 2098
.|.||.|||| .|| || ||||||| .||.|| |||..|..|.|||..|||| ||.||
Sbjct 4318 ----TGAGGATGGGATTAGCGAAGCT--GTGGAGACTGCACATCCGGACCTGCCCATGTCTCAAAACAAACACA 4385
Query 2099 CGCCC--------------------------------------------------------------------- 2103
.|..|
Sbjct 4386 TGTACAGTGGCTCTTTTTCCTTCTCAAACACTTTACCCCAGAAGCAGGTGGTCTGCCCCAGGCATAAAGAAGGA 4459
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4460 AAATTGGCCATCTTTCCCACCTCTAAATTCTGTAAAATTATAGACTTGCTCAAAAGATTCCTTTTTATCATCCC 4533
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4534 CACGCTGTGTAAGTGGAAAGGGCATTGTGTTCCGTGTGTGTCCAGTTTACAGCGTCTCTGCCCCCTAGCGTGTT 4607
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4608 TTGTGACAATCTCCCTGGGTGAGGAGTGGGTGCACCCAGCCCCGAGGCCAGTGGTTGCTCGGGGCCTTCCGTGT 4681
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4682 GAGTTCTAGTGTTCACTTGATGCCGGGGAATAGAATTAGAGAAAACTCTGACCTGCCGGGTTCCAGGGACTGGT 4755
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4756 GGAGGTGGATGGCAGGTCCGACTCGACCATGACTTAGTTGTAAGGGTGTGTCGGCTTTTTCAGTCTCATGTGAA 4829
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4830 AATCCTCCTGTCTCTGGCAGCACTGTCTGCACTTTCTTGTTTACTGTTTGAAGGGACGAGTACCAAGCCACAAG 4903
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4904 AACACTTCTTTTGGCCACAGCATAAGCTGATGGTATGTAAGGAACCGATGGGCCATTAAACATGAACTGAACGG 4977
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4978 TTAAAAGCACAGTCTATGGAACGCTAATGGAGTCAGCCCCTAAAGCTGTTTGCTTTTTCAGGCTTTGGATTACA 5051
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 5052 TGCTTTTAATTTGATTTTAGAATCTGGACACTTTCTATGAATGTAATTCGGCTGAGAAACATGTTGCTGAGATG 5125
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 5126 CAATCCTCAGTGTTCTCTGTATGTAAATCTGTGTATACACCACACGTTACAACTGCATGAGCTTCCTCTCGCAC 5199
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 5200 AAGACCAGCTGGAACTGAGCATGAGACGCTGTCAAATACAGACAAAGGATTTGAGATGTTCTCAATAAAAAGAA 5273
Query 2104 ------------ 2103
Sbjct 5274 AATGTTTCACTA 5285
