Nucleotide Global Alignment

Description

• Query: ccsbBroad304_05974
• Subject: XR_001751813.2
• Aligned Length: 4556
• Identities: 2274
• Gaps: 2281

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCACTTCACAGTTACATTTGGCAGGCAGGCGGGCTCGCACGCCGGAGCGCTCAGCCCAGAATTAGTGGATTTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTGGAATCTCCCTGCCTCCTCCAAGCTCCGCCGCCGCCGCCGGCTTGTGCATAGACGGTAGCGTCAAGACACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCTGCACTTTGGGTTGCGGACACCCAGAGCCCAGCGCGCCCGCCCTGCGTCTCCGCACCAAGCCCTGTAGCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGAGAGGCATGAACGGAATCCGGAGGCGCCTGCCTAGCGAGCGAGGACCGGTCGGCGCTTGCCGCCCTCGGGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTAACCCCGAGCACCTCCAGCCATTTGTGAACCTGGAGGCTTGACATTCGCCAGCGCAGGGCCCCACAAGAGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCAATGAAAAGAAAAGCCAATGGATTGTGGTCTTAGAAAAGCTGCTTAGATGATGTCTGTTTCCCGTGCTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAGACACGTGGCAGAGCTGTAAGTAAATGCTCGGCACTGCATGATGAATTGGATGGCTGCAGACCGGAGACAAA  518

Query    1  ------------------------------------------------ATGCCAGAACGGCTAGCGGAAATGCT  26
                                                            ||||||||||||||||||||||||||
Sbjct  519  AAAAATAATTGTCTCATTTTCGTGGTGATTTGCTTAACTGGTGGGACCATGCCAGAACGGCTAGCGGAAATGCT  592

Query   27  CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC  100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC  666

Query  101  AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC  740

Query  175  TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG  814

Query  249  CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA  888

Query  323  TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT  962

Query  397  ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT  1036

Query  471  TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT  1110

Query  545  TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT  618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT  1184

Query  619  TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA  692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA  1258

Query  693  CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC  766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC  1332

Query  767  TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG  1406

Query  841  TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT  1480

Query  915  TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG  988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG  1554

Query  989  CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG  1628

Query 1063  GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA  1702

Query 1137  AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG  1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG  1776

Query 1211  CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC  1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC  1850

Query 1285  ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC  1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC  1924

Query 1359  ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT  1432
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct 1925  ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATT-------------------  1979

Query 1433  CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA  1506
                                                                                      
Sbjct 1980  --------------------------------------------------------------------------  1979

Query 1507  TTTTTATGTGAAAATGGAAAACCCGGCCAAGTCATTCAAACTGTTAGCGCCATGGACAAAGATGATCCCAAAAA  1580
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980  -----------------------------AGTCATTCAAACTGTTAGCGCCATGGACAAAGATGATCCCAAAAA  2024

Query 1581  CGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCAACAATCCGAATTTCACCATCAAGAAAAATGAAG  1654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025  CGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCAACAATCCGAATTTCACCATCAAGAAAAATGAAG  2098

Query 1655  ATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAACCGCCAGAAGCAAGAAGTCTATCTTTTACCAATC  1728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099  ATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAACCGCCAGAAGCAAGAAGTCTATCTTTTACCAATC  2172

Query 1729  ATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAGCACCTTGACAATCAGGGTCTGTGGCTGCAGCAA  1802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173  ATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAGCACCTTGACAATCAGGGTCTGTGGCTGCAGCAA  2246

Query 1803  TGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCCTTCCAATTGGACTCAGTATGGGCGCCTTAATTG  1876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247  TGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCCTTCCAATTGGACTCAGTATGGGCGCCTTAATTG  2320

Query 1877  CCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTGCTGTTTGTAACTCTACGGCGGCATAAAAATGAA  1950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321  CCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTGCTGTTTGTAACTCTACGGCGGCATAAAAATGAA  2394

Query 1951  CCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACATCATTCGCTACGATGATGAAGGAGGAGGGGAGGA  2024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395  CCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACATCATTCGCTACGATGATGAAGGAGGAGGGGAGGA  2468

Query 2025  GGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATA  2098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469  GGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATA  2542

Query 2099  TTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTT  2172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543  TTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTT  2616

Query 2173  ATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACAGCCCCGCCATATGACTCCATTCAGATATATGGCTA  2246
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 2617  ATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACGGCCCCGCCATATGACTCCATTCAGATATATGGCTA  2690

Query 2247  TGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCACCACATCAGACTCAGACCAGAATTTTG  2320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691  TGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCACCACATCAGACTCAGACCAGAATTTTG  2764

Query 2321  ACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGCGAACTCTACTCTGTTGGTGAAAGTGACAAAGAA  2394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765  ACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGCGAACTCTACTCTGTTGGTGAAAGTGACAAAGAA  2838

Query 2395  ACT-----------------------------------------------------------------------  2397
            |||                                                                       
Sbjct 2839  ACTTGACAGTGGATTATAAATAAATCACTGGAACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATA  2912

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 2913  CAACCAATGTGGCTATTTGTTTTAGAGGCAAGTTTAGCACCAGTCATCTATAAACTCAACCACATTTTAATGTT  2986

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 2987  GAACCAAAAAAAGATAATAAAATAAAAAAGTATATGTTAGGAGGTTATAAATCTTGTGGAGTGTGAATTAAGTA  3060

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3061  TGTGGAGTGTCTAGAAGTCCTTGGATATTTGATATTTACCTGACCACCACAGACAAAGATTGGGATCCTGGCTA  3134

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3135  ATCCTTAGATAAATGGTTTAAATAGAGGAAAAAATCATAATTAAAAGGTGCTTTCTTAGAAAAAAAAATACGGA  3208

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3209  CCTGCAAGGAATCTGCTGCTGATATGTGTCTTCTGCAAGGATTTTTATGAATGCAAATGGTTTTTTCCCCTTCA  3282

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3283  CCAATAAGGATCCCGCCACAAATGATAAAGCAATACTTGGTCTGCTGTACATTATAACTTTTTGGAGTTTTGAG  3356

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3357  AGGCCTCCTAGATTATACAGTACGGTGACCACACATTGTACATAATTGTTGGCCCCACTCACTAGAGACTGAAT  3430

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3431  AGCATCTTTAAATATTGTGTCGAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGCTTGCCAA  3504

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3505  TTCAGTGGTGGGAGGAGAGAAATCCCATTCAAACATGCTTGTTTTCTAGAAGCAGGATTCCTCGTTCCCTCCTC  3578

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3579  TTCATCTTCTTCCACAAGGACACAAAGATAAACTGTATCACACAGTGGACTACATAAGAGACAGATGGTTTTAT  3652

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3653  TGCTAGCGCGTGAATTTATTTGTTTAATCCTCGAAATAAATATTTTATTGATGTCCATTAATGCTTTTATTTAT  3726

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3727  TAAGGTCGGTAATCTATAGATTAAGGGGATATATGGGAAAAAACTAAATTATATCCATTAATAATCCTTTAGAT  3800

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3801  TGTTTTATATAAATATATATACAATGAATGTTTAATACATGTACATTTTGATGAGATGAGTATGGCAGGCAATA  3874

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3875  TTATCGAAAGGAGAGCTAATAGTCTCTTTAGAGTAGAAAGTGTTATTGTAACTGGAGATGGCAGGAACAGCATC  3948

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3949  TTCCCAGACAAACTTTTGGACTGTTTTCTATTTTGTTCATAATCCTAGTATTTGGTGTTTTTACTACAAGCACA  4022

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4023  AACATCCTAAAGTATATTGATTCCTGTGAATATTTAAACTCTAGACTTTTAGATACCTACATCATGCCCTGCCC  4096

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4097  AATAAACATGCTTCAATTTACCCCCACAGTTTTAGAGCAGGAACTGATTTGTACATAATTTCACTGTTTACGTT  4170

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4171  TTTAGCACTCCTATCCCTGATCTTCATGGTGATGCACAGAATGTCTTAGACTCCAAAAAGGAACAGCACTAGAA  4244

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4245  GATGTGAGCATATTTAATTTGTAATGCAAACCTGCCATTTAGGAGTAGAAAATGTATGATAAAACTCAAGTATT  4318

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4319  ACATGCAGATCATTTTAATTTTCTACTTTGCTTTAATGCAATATTGTTTATTCACTCCATGTATTGTATTCAGA  4392

Query 2398  ------------------------------------------  2397
                                                      
Sbjct 4393  GAAACTCCTGTATTGTTTCCTACTTTGTGAAATATATTTTTA  4434