Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06003
- Subject:
- NM_027454.4
- Aligned Length:
- 1412
- Identities:
- 1084
- Gaps:
- 103
Alignment
Query 1 -----ATGCTCC---CAGATTTTATGCTGGTTCTCATCGTCCTTGGCA-TCCC-----TTCCT----------- 49
|.|||.| |.|.|.||.| |||.||||| .||.|| ||.| |||||
Sbjct 1 ATGACAGGCTTCCTACGGGTCTTCT--TGGCTCTCA------GTGCCACTCTCTCAGGTTCCTGGGTGACTCTC 66
Query 50 -CAGCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCCTCCTCAGACATTTGTTCCAAGGTTATCA 122
|||||||..|.||..|||.||||.|.||.|||.|||||||.||.|||||||||||||||||||||||||||||
Sbjct 67 ACAGCCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTATCA 140
Query 123 GAAATGGGTCCGCCCTGTATTACATTCTAATGACACCATAAAAGTATATTTTGGATTGAAAATATCCCAGCTTG 196
||||||.|||||||||||.||..||||.|.|||||.|||||||||.|||||||||||.||.|||||.|||||||
Sbjct 141 GAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAGCTTG 214
Query 197 TAGATGTGGATGAAAAGAATCAGCTGATGACAACCAATGTGTGGCTCAAACAGGAATGGACAGACCACAAGTTA 270
||||||| |||||||||||||||.||.|||
Sbjct 215 TAGATGT---------------------------------------------GGAATGGACAGACCAAAAATTA 243
Query 271 CGCTGGAATCCTGATGATTATGGTGGGATCCATTCCATTAAAGTTCCATCAGAATCTCTGTGGCTTCCTGACAT 344
||.||||||||.||.||.||||||||.||..||||.||.||.||||||||.||.||.||.|||||.||||||||
Sbjct 244 CGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACAT 317
Query 345 AGTTCTCTTTGAAAATGCTGACGGCCGCTTCGAAGGCTCCCTGATGACCAAGGTCATCGTGAAATCAAACGGAA 418
||||||||||||||||||||||||.||.||.||.|||||.||.||||||||||.|||.||||||||.|.|||||
Sbjct 318 AGTTCTCTTTGAAAATGCTGACGGACGTTTTGAGGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGCGGAA 391
Query 419 CTGT-TGTCTGGACCCCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCACGTTTTTCCCGTTCGACCG 491
|.|| .|| |||||.||||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||...
Sbjct 392 CCGTCAGT-TGGACTCCTCCCGCCAGCTACAAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCGATAA 464
Query 492 ACAGAACTGCTCCATGAAGTTTGGATCCTGGACTTATGATGGCACCATGGTTGACCTCATTTTGATCAATGAAA 565
.|||||||||||.||||||||.||||||||||||||.|||||.||||||||.|||||||||.||||||||||||
Sbjct 465 GCAGAACTGCTCAATGAAGTTCGGATCCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAATGAAA 538
Query 566 ATGTCGACAGAAAAGACTTCTTCGATAACGGAGAATGGGAAATACTGAATGCAAAGGGGATGAAGGGGAACAGA 639
|.||.|||.|.||||||||.||.|||||||||||.|||||.|||||.||||||||||||||||||||.||||||
Sbjct 539 ACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAACAGA 612
Query 640 AGGGACGGCGTGTACTCCTATCCCTTTATCACGTATTCCTTCGTCCTGAGACGCCTGCCTTTATTCTATACCCT 713
||.||.|||.|.|||||||||||.|||.|.||.||.||.||.||.||||||||||||||..|.||.||.|||||
Sbjct 613 AGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACACCCT 686
Query 714 CTTTCTCATCATCCCCTGCCTGGGGCTGTCTTTCCTAACAGTTCTTGTGTTCTATTTACCTTCGGATGAAGGAG 787
||||.|.||.|||||||||||||||||||||||.||.||.||.||.||||||||..||||.||.||.|||||.|
Sbjct 687 CTTTTTGATAATCCCCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAAGGGG 760
Query 788 AAAAACTTTCATTATCCACATCGGTCTTGGTTTCTCTGACAGTTTTCCTTTTAGTGATTGAAGAAATCATCCCA 861
|||||||.||.||||||||.|||||.|||||||||.|||||||.||.||||||||.||.||||||||.|||||.
Sbjct 761 AAAAACTCTCCTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAATCCCG 834
Query 862 TCGTCTTCCAAAGTCATTCCTCTCATTGGAGAGTACCTGCTGTTCATCATGATTTTTGTGACCCTGTCCATCAT 935
||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||||.||.||
Sbjct 835 TCTTCTTCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTATTAT 908
Query 936 TGTTACCGTGTTTGTCATTAACGTTCACCACAGATCTTCTTCCACGTACCACCCCATGGCCCCCTGGGTTAAGA 1009
|||.||.||.|||||.|||||.||.||||||||||||||.||.||||||||.|||||||||||||||||.||||
Sbjct 909 TGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTGAAGA 982
Query 1010 GGCTCTTTCTGCAGAAACTTCCAAAATTACTTTGCATGAAAGATCATGTGGATCGCTACTCATCCCCAGA--GA 1081
||||.||||||.|.|||||.||.|.||..|||||||||||.||.|....|||.||||.|||.|.|||.|| ||
Sbjct 983 GGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCCGATGGA 1056
Query 1082 AAGAGGAGAGT----CAACCAGTAGTGAAAGGCAAAGTCCTCGAAAAAAAGAAACAGAAACAGCT-----TAGT 1146
| .||||||| .|||| ||||..||.|||.|.|..|..||||||||.|||| || .|||
Sbjct 1057 A--CGGAGAGTAAGGGAACC----GTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGA-----CTCCTACCAGT 1119
Query 1147 GATGGAGAAAAAGTTCTAGTTGCTTTTTTGGAAAAAGCTGCTGATTCCATTAGATACATTTCCAGACATGTGAA 1220
||||||||||.||||||.||.|||||..||||.||.||..||||.|||||.||||||||.||.||.||||||||
Sbjct 1120 GATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATGTGAA 1193
Query 1221 GAAAGAACATTTTATCAGCCAGGTAGTACAAGACTGGAAATTTGTAGCTCAAGTTCTTGACCGAATCTTCCTGT 1294
|||.|||||.||.|||||.|||||.||.||||||||||||||.||.|||||.|||||||||||.||||||||.|
Sbjct 1194 GAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATCTTCCTCT 1267
Query 1295 GGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCTTTGAAGATGTGGCTACATAGT 1368
||||||||||||.||..||.||....|||||.||.||||||||||..||.||.||||||||||||.|||||.||
Sbjct 1268 GGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGTGGATACATCGT 1341
Query 1369 TACCAT 1374
|.||||
Sbjct 1342 TTCCAT 1347