Nucleotide Global Alignment

Description

• Query: ccsbBroad304_06003
• Subject: NM_173212.4
• Aligned Length: 1412
• Identities: 1125
• Gaps: 58

Alignment

Query    1  -----ATGCTCC---CAGATTTTATGCTGGTTCTCATCGTCCTTGGCA-TCCC-----TTCCT-----------  49
                 |.|||.|   |.|.|.||.|  |||.|||||      .||.|| ||.|     |||||           
Sbjct    1  ATGACAGGCTTCCTACGGGTCTTCT--TGGCTCTCA------GTGCCACTCTCTCAGGTTCCTGGGTGACTCTC  66

Query   50  -CAGCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCCTCCTCAGACATTTGTTCCAAGGTTATCA  122
             |||||||..|.||..|||.||||.|.||.|||.|||||||.||.|||||||||||||||||||||||||||||
Sbjct   67  ACAGCCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTATCA  140

Query  123  GAAATGGGTCCGCCCTGTATTACATTCTAATGACACCATAAAAGTATATTTTGGATTGAAAATATCCCAGCTTG  196
            ||||||.|||||||||||.||..||||.|.|||||.|||||||||.|||||||||||.||.|||||.|||||||
Sbjct  141  GAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAGCTTG  214

Query  197  TAGATGTGGATGAAAAGAATCAGCTGATGACAACCAATGTGTGGCTCAAACAGGAATGGACAGACCACAAGTTA  270
            ||||||||||||||||||||||||||||||||||.||.||||||||.||.|||||||||||||||||.||.|||
Sbjct  215  TAGATGTGGATGAAAAGAATCAGCTGATGACAACAAACGTGTGGCTGAAGCAGGAATGGACAGACCAAAAATTA  288

Query  271  CGCTGGAATCCTGATGATTATGGTGGGATCCATTCCATTAAAGTTCCATCAGAATCTCTGTGGCTTCCTGACAT  344
            ||.||||||||.||.||.||||||||.||..||||.||.||.||||||||.||.||.||.|||||.||||||||
Sbjct  289  CGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACAT  362

Query  345  AGTTCTCTTTGAAAATGCTGACGGCCGCTTCGAAGGCTCCCTGATGACCAAGGTCATCGTGAAATCAAACGGAA  418
            ||||||||||||||||||||||||.||.||.||.|||||.||.||||||||||.|||.||||||||.|.|||||
Sbjct  363  AGTTCTCTTTGAAAATGCTGACGGACGTTTTGAGGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGCGGAA  436

Query  419  CTGT-TGTCTGGACCCCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCACGTTTTTCCCGTTCGACCG  491
            |.|| .|| |||||.||||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||...
Sbjct  437  CCGTCAGT-TGGACTCCTCCCGCCAGCTACAAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCGATAA  509

Query  492  ACAGAACTGCTCCATGAAGTTTGGATCCTGGACTTATGATGGCACCATGGTTGACCTCATTTTGATCAATGAAA  565
            .|||||||||||.||||||||.||||||||||||||.|||||.||||||||.|||||||||.||||||||||||
Sbjct  510  GCAGAACTGCTCAATGAAGTTCGGATCCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAATGAAA  583

Query  566  ATGTCGACAGAAAAGACTTCTTCGATAACGGAGAATGGGAAATACTGAATGCAAAGGGGATGAAGGGGAACAGA  639
            |.||.|||.|.||||||||.||.|||||||||||.|||||.|||||.||||||||||||||||||||.||||||
Sbjct  584  ACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAACAGA  657

Query  640  AGGGACGGCGTGTACTCCTATCCCTTTATCACGTATTCCTTCGTCCTGAGACGCCTGCCTTTATTCTATACCCT  713
            ||.||.|||.|.|||||||||||.|||.|.||.||.||.||.||.||||||||||||||..|.||.||.|||||
Sbjct  658  AGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACACCCT  731

Query  714  CTTTCTCATCATCCCCTGCCTGGGGCTGTCTTTCCTAACAGTTCTTGTGTTCTATTTACCTTCGGATGAAGGAG  787
            ||||.|.||.|||||||||||||||||||||||.||.||.||.||.||||||||..||||.||.||.|||||.|
Sbjct  732  CTTTTTGATAATCCCCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAAGGGG  805

Query  788  AAAAACTTTCATTATCCACATCGGTCTTGGTTTCTCTGACAGTTTTCCTTTTAGTGATTGAAGAAATCATCCCA  861
            |||||||.||.||||||||.|||||.|||||||||.|||||||.||.||||||||.||.||||||||.|||||.
Sbjct  806  AAAAACTCTCCTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAATCCCG  879

Query  862  TCGTCTTCCAAAGTCATTCCTCTCATTGGAGAGTACCTGCTGTTCATCATGATTTTTGTGACCCTGTCCATCAT  935
            ||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||||.||.||
Sbjct  880  TCTTCTTCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTATTAT  953

Query  936  TGTTACCGTGTTTGTCATTAACGTTCACCACAGATCTTCTTCCACGTACCACCCCATGGCCCCCTGGGTTAAGA  1009
            |||.||.||.|||||.|||||.||.||||||||||||||.||.||||||||.|||||||||||||||||.||||
Sbjct  954  TGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTGAAGA  1027

Query 1010  GGCTCTTTCTGCAGAAACTTCCAAAATTACTTTGCATGAAAGATCATGTGGATCGCTACTCATCCCCAGA--GA  1081
            ||||.||||||.|.|||||.||.|.||..|||||||||||.||.|....|||.||||.|||.|.|||.||  ||
Sbjct 1028  GGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCCGATGGA  1101

Query 1082  AAGAGGAGAGT----CAACCAGTAGTGAAAGGCAAAGTCCTCGAAAAAAAGAAACAGAAACAGCT-----TAGT  1146
            |  .|||||||    .||||    ||||..||.|||.|.|..|..||||||||.||||     ||     .|||
Sbjct 1102  A--CGGAGAGTAAGGGAACC----GTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGA-----CTCCTACCAGT  1164

Query 1147  GATGGAGAAAAAGTTCTAGTTGCTTTTTTGGAAAAAGCTGCTGATTCCATTAGATACATTTCCAGACATGTGAA  1220
            ||||||||||.||||||.||.|||||..||||.||.||..||||.|||||.||||||||.||.||.||||||||
Sbjct 1165  GATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATGTGAA  1238

Query 1221  GAAAGAACATTTTATCAGCCAGGTAGTACAAGACTGGAAATTTGTAGCTCAAGTTCTTGACCGAATCTTCCTGT  1294
            |||.|||||.||.|||||.|||||.||.||||||||||||||.||.|||||.|||||||||||.||||||||.|
Sbjct 1239  GAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATCTTCCTCT  1312

Query 1295  GGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCTTTGAAGATGTGGCTACATAGT  1368
            ||||||||||||.||..||.||....|||||.||.||||||||||..||.||.||||||||||||.|||||.||
Sbjct 1313  GGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGTGGATACATCGT  1386

Query 1369  TACCAT  1374
            |.||||
Sbjct 1387  TTCCAT  1392