Nucleotide Global Alignment

Description

• Query: ccsbBroad304_06056
• Subject: NM_001289899.1
• Aligned Length: 1273
• Identities: 899
• Gaps: 197

Alignment

Query    1  ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCT  74
            ||||||.||.|.||.||.||.|.|||.||.||||||||.|||||||||||.||||||||.|||||||||||.||
Sbjct    1  ATGGAGTTGCGTGTGGGAAATAAGTATCGCCTGGGCCGAAAGATCGGCAGTGGCTCCTTTGGAGACATCTACCT  74

Query   75  CGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGTCAAAACCAAACACCCTCAGCTCC  148
            .|||.|..|||||||..|.||.||.||.||.|||||||||||.||||||||.||.||.|||||.||.|||||||
Sbjct   75  GGGTGCCAACATTGCCTCTGGTGAGGAAGTAGCCATCAAGCTCGAATGTGTGAAGACGAAACATCCCCAGCTCC  148

Query  149  ACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCACCATCAGATGGTGCGGGGCAGAG  222
            ||||.||||||||..|||||||||||||||||||.||||||||.|||||..||||||..|||||||||||.|||
Sbjct  149  ACATCGAGAGCAAGTTCTACAAGATGATGCAGGGCGGAGTGGGGATCCCGTCCATCAAGTGGTGCGGGGCTGAG  222

Query  223  GGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAA  296
            ||.|||||.|||||.|||||.|||||||||||||||||.||||||||||||||||||||||||||.|||.||||
Sbjct  223  GGAGACTATAACGTGATGGTCATGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGTTCCCGGAA  296

Query  297  ATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCATCGAATACATTCATTCAAAGAACT  370
            .|||||||||||.||.||.|||.||||.||.|||||.||||||||.||||||||.|||||.||.||.|||||||
Sbjct  297  GTTCAGCCTCAAGACGGTGCTGTTGCTGGCCGACCAGATGATCAGCCGCATCGAGTACATACACTCCAAGAACT  370

Query  371  TCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGAAGGGCAACCTGGTGTACATCATC  444
            ||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||||.
Sbjct  371  TCATCCACCGGGATGTGAAGCCCGACAACTTCCTCATGGGCCTGGGGAAGAAAGGCAACCTGGTGTACATCATT  444

Query  445  GACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATCCCCTATCGTGAGAACAAGAACCT  518
            ||||||||.|||||||||||||||||.|||||.|||||.||||||||.||.|||||.||.||.|||||||||||
Sbjct  445  GACTTCGGCCTGGCCAAGAAGTACCGCGATGCCCGCACACACCAGCATATTCCCTACCGGGAAAACAAGAACCT  518

Query  519  CACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACAATCCCGAAGAGATGACTTGGAG-  591
            .||.||.||.||.||.||.|||||.||||||||.|||||.||.|||||.|||..|||..||||||||.|.||| 
Sbjct  519  GACCGGCACTGCCCGCTATGCCTCTATCAACACCCACCTGGGCATTGAGCAAAGCCGTCGAGATGACCTAGAGA  592

Query  592  TCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCTGCCACCAAGAG  665
            .|| |||||||.|||||.||||||||||||||||||||.||.|||||||||||.||.||.||.|||||||||.|
Sbjct  593  GCT-TGGGCTATGTGCTCATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGCCTCAAAGCAGCCACCAAGCG  665

Query  666  ACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTGTTGTGTAAAGGCTACCCTTCCG  739
            .|||||.|||||..||||||||||||||||.|||||.||.||.|||||.||..|.||.|||||||||||.||||
Sbjct  666  TCAGAAGTACGAGCGGATTAGCGAGAAGAAGATGTCAACGCCAATCGAGGTCCTCTGCAAAGGCTACCCCTCCG  739

Query  740  AATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCCTGACTACTCGTACCTGCGGCAG  813
            |.||..|.||||||||.||.||||||||.|||.||||.||.||.||.||||||||||||||.||||||||.|||
Sbjct  740  AGTTCTCAACATACCTCAACTTCTGCCGCTCCCTGCGGTTCGATGATAAGCCTGACTACTCCTACCTGCGCCAG  813

Query  814  CTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCGACTGGAACATGCTCAAATTTGG  887
            ||.|||||.|||||.||.||.||.|||||.||||||||.||||||||.|||||||||||||||||||||||   
Sbjct  814  CTCTTCCGAAATCTCTTTCACCGGCAGGGTTTCTCCTACGACTACGTCTTCGACTGGAACATGCTCAAATT---  884

Query  888  TGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACA--------CTC  953
                  |.||||..||       .|||||       ||||..|       ||| .|.||||||        ||.
Sbjct  885  ------CGGGGCTTCC-------TCGAGC-------CAGGCTC-------AGC-CCCGAGACAACGAAGCTCTT  930

Query  954  GCGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCC--GCCTGCGGGGGACGCAGGAAGTGGCTCC  1025
            |||..||||.||  ||     ||.|||||           ||||  ||  ||.|||..||||  .|.|     |
Sbjct  931  GCGCCACCCTGC--CC-----CCGCCCTT-----------GGCCTTGC--GCTGGGCCCGCA--TACT-----C  977

Query 1026  CCCCAC--------ACCCCTCACCCCT----ACCTCACACACGGCTAACACCTCCCCCC-----GGCCTGTCTC  1082
            .|||||        .|||..|.|||||    |||     ||.||         .|||||     ||||.|    
Sbjct  978  ACCCACTTACTGGTGCCCGGCGCCCCTGGGCACC-----CAAGG---------ACCCCCAGATAGGCCGG----  1033

Query 1083  CGGCATGGAGAGAGAGCGGAAAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACC  1156
                 |||||              |||.|.|.||                     ||||.||.|.|      ||
Sbjct 1034  -----TGGAG--------------GAGGAGGTGG---------------------AACAACTGCCC------CC  1061

Query 1157  TCACAGGCCGACAAGATACCTCTCGCATGTCCACCTCACAGATTCCTGGTCGGGTGGCTTCCAGTGGTCTTCAG  1230
            |||         ||||||   .|.||.||                 |||||   |||..||||  ||.|..|||
Sbjct 1062  TCA---------AAGATA---TTGGCCTG-----------------TGGTC---TGGACTCCA--GGGCCCCAG  1101

Query 1231  TCTGTCGTGCACCGA  1245
            |   ||         
Sbjct 1102  T---TC---------  1104