Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06073
- Subject:
- NR_033807.3
- Aligned Length:
- 3336
- Identities:
- 1350
- Gaps:
- 1839
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTGTGCAGGGCAGGGAAGCTCCAGGCAAACAGCCCAGCAAACAGCAGCACTCAGCTAAAAGGAAGACTCACAG 74
Query 1 --------------------------ATGGATCTCATCCCAAACTTGGCCGTGGAAACCTGGCTTCTCCTGGCT 48
|||||.|||||||||||.|||||.||||||||||||||||||||||||
Sbjct 75 AACACAGTTGAAGAAGGAAAGTGGCGATGGACCTCATCCCAAATTTGGCGGTGGAAACCTGGCTTCTCCTGGCT 148
Query 49 GTCAGCCTGATACTCCTCTATCT--------------------------------------------------- 71
|||||||||.|.|||||||||||
Sbjct 149 GTCAGCCTGGTGCTCCTCTATCTGATGAGAGTCCCCAAATCAGCGAAGAGTCCACTTACTAAACAGACATAAGG 222
Query 72 -------------------------------------------------------------------------- 71
Sbjct 223 AAATGAAGTGTCCTGGAAGAATTCCTGCCTGAACCTCTCAGGAGCATTTGAGGACATTTATCAAGTATTCACTC 296
Query 72 -------------------------------------------------------------------------- 71
Sbjct 297 CAGGATTGGGACTATGAAGACTTCAGCTGCTTTCAGCTAATCATTGAGACTTTTCAGGGGTCTCAGAATAGTCA 370
Query 72 -------------------------------------------------------------------------- 71
Sbjct 371 GGAAAGGACCTGATGAGTGAATGCAATTACTGATGTTGGAGTTGCTGTTATTATTTATCGTGTACATATTACCT 444
Query 72 -------------------------------------------------------------------------- 71
Sbjct 445 CCCTCTCTTGACCATTCCAGTTCCTGAGTAACTCACCAGCCCTCTGATCTATAAAGTCACAATCCCTGTGACCT 518
Query 72 ---------------------ATATGGAACCCGTACACATGGACTTTTTAAGAAGCTTGGAATTCCAGGGCCCA 124
||||||.|||||||||||||||||||||||||..||.||||||||||||||||
Sbjct 519 GATTTCTGTTTCACTTTGTAGATATGGGACCCGTACACATGGACTTTTTAAGAGACTGGGAATTCCAGGGCCCA 592
Query 125 CACCTCTGCCTTTTTTGGGAAATGCTTTGTCCTTCCGTAAGGG-CTATTGGACGTTTGACATGGAATGTTATAA 197
|||||||||||||.||||||||||.||||||||..|||.|||| || .||||..|||||||..||.||.|||||
Sbjct 593 CACCTCTGCCTTTGTTGGGAAATGTTTTGTCCTATCGTCAGGGTCT-CTGGAAATTTGACACAGAGTGCTATAA 665
Query 198 AAAGTATAGAAAAGTCTGGGGTAT-------------------------------------------------- 221
|||||||.|||||.|.||||||||
Sbjct 666 AAAGTATGGAAAAATGTGGGGTATCTCTTCCCTGTTTGGACCACATTACCCTTCATCATATGAAGCCTTGGGTG 739
Query 222 -------------------------------------------------------------------------- 221
Sbjct 740 GCTCCTGTGTGAGACTCTTGCTGTGTGTCACACCCTAATGAACTAGAACCTAAGGTTGCTGTGTGTCGTACAAC 813
Query 222 ---------------------------TTATGACTGTCAACAGCCTATGCTGGCTATCACAGATCCCGACATGA 268
.|||||..||||||..|||.|||||||.|||||||||||||||.|||
Sbjct 814 TAGGGCTCCGTTGTCCCCACACAGAACGTATGAAGGTCAACTCCCTGTGCTGGCCATCACAGATCCCGACGTGA 887
Query 269 TCAAAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAACCGGAGGCCTTTCGGGCCAGTGGGATTTATG 342
|||.|||||||||||||||||||||||||||||||||||||||.||.|||.||||.||.|||||||||||||||
Sbjct 888 TCAGAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAATCGAAGGTCTTTAGGCCCAGTGGGATTTATG 961
Query 343 AAAAATGCCATCTCTATAGCTGAGGATGAAGAATGGAAGAGAATACGATCATTGCTGTCTCCAACATTCACCAG 416
||||.||||||||||.|||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 962 AAAAGTGCCATCTCTTTAGCTGAGGATGAAGAATGGAAGAGAATACGGTCATTGCTGTCTCCAACCTTCACCAG 1035
Query 417 CGGAAAACTCAAGGAGATGGTCCCTATCATTGCCCAGTATGGAGATGTGTTGGTGAGAAATCTGAGGCGGGAAG 490
|||||||||||||||||||.||||.|||||||||||||||||||||||.|||||||||||..||||||||||||
Sbjct 1036 CGGAAAACTCAAGGAGATGTTCCCCATCATTGCCCAGTATGGAGATGTATTGGTGAGAAACTTGAGGCGGGAAG 1109
Query 491 CAGAGACAGGCAAGCCTGTCACCTTGAAACACGTCTTTGGGGCCTACAGCATGGATGTGATCACTAGCACATCA 564
||||||.||||||||||||||||||||||.||.||||||||||||||||||||||||||||.|||.||||||||
Sbjct 1110 CAGAGAAAGGCAAGCCTGTCACCTTGAAAGACATCTTTGGGGCCTACAGCATGGATGTGATTACTGGCACATCA 1183
Query 565 TTTGGAGTGAGCATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAAAACACCAAGAAGCTTTTAAGATT 638
||||||||||.|||||||||||||||||||||||||||||||||||||||.|.|||.||||||.|..|||.|||
Sbjct 1184 TTTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAGAGCACTAAGAAGTTCCTAAAATT 1257
Query 639 TAATCCATTAGATCCATTCGTTCTCTCAATAAAAGTCTTTCCATTCCTTACCCCAATTCTTGAAGCATTAAATA 712
|..|...|||||||||||..||||||||||||.|.||||||||||||||||||||.||.||||||||||||||.
Sbjct 1258 TGGTTTCTTAGATCCATTATTTCTCTCAATAATACTCTTTCCATTCCTTACCCCAGTTTTTGAAGCATTAAATG 1331
Query 713 TCACTGTGTTTCCAAGAAAAGTT---ATAAGTTTTCTAACAAAATCTGTAAA---------------------- 761
||.||.||||||| |||||.| ||||.||||.|||..|||||||||||
Sbjct 1332 TCTCTCTGTTTCC---AAAAGATACCATAAATTTTTTAAGTAAATCTGTAAACAGAATGAAGAAAAGTCGCCTC 1402
Query 762 ----ACAGATAAAAG----------------------------------------------------------- 772
|||.|.|||||
Sbjct 1403 AACGACAAACAAAAGGTAAAATCTGATGGTGGTTAAATGACGATGTTTAGGTTTTGATAAATTTAGATTTTATA 1476
Query 773 -------------------------------------------------------------------------- 772
Sbjct 1477 CACATGATAGAGCATGTATCTGTATTTTTAAAAATAAAGACAGAGAACTTATGTTTAGAACAAGAGAAGCCATT 1550
Query 773 -------------------------------------------------------------------------- 772
Sbjct 1551 TGGTAGAAATAAAGAAGGAGATTGGGGAAGGAGATGAGAATGAGTCAGAGAGATAGCATTTAAAACTTGAAATC 1624
Query 773 -------------------------------------------------------------------------- 772
Sbjct 1625 AGGCACAACAATTAGTATGTCATGATATAAACAGTATTGAGATAAAATTTTACCACTTCTCTTCCCTTTAATAA 1698
Query 773 -------------------------------------------------------------------------- 772
Sbjct 1699 ATTGTCAAAGGATAAAGTTTCCTGTTTGAAAATATATTTTACTGGTATTGTGCTTTCCTCATATCACAGATTGG 1772
Query 773 --------------------------------------------------AAGGTC------------------ 778
||||||
Sbjct 1773 TAAAGAATCATTTTAAGTCCAAGACTCTTATTTTACATATTCTGCAATTAAAGGTCCTATGAGGCTACCTGCCG 1846
Query 779 -----------------------------------------GCCT----------------------------- 782
||||
Sbjct 1847 ACTGCTGACATGTAGTGTGTGGTAAATGTGAGTGTTTCACAGCCTGGAGTGAACAGGGGTCTTCTCTGAGAATT 1920
Query 783 -------------------------------------------------------------------------- 782
Sbjct 1921 GAGGTTGCAAGGCTGGCTAACTCAGCTTTGCCTTCACGAGCCCTAGAGGCCAGCCGAAGGATGTCTGCAGGTCA 1994
Query 783 -------------------------------------------------------------------------- 782
Sbjct 1995 GGGAGACAGGACCAGGTAACCCAGCTGTCACTGAAGATTATATAGAGTTTGAGAATGTTGGAATATTTGAAAAT 2068
Query 783 -------------------------------------------------------------------------- 782
Sbjct 2069 GCTCCCCCAAAAAAGCTGCTGATGAGTTCTGGAAATGTCAGGAGATTAATCTATACGGACACTGCTGAAGAAAA 2142
Query 783 -------------------------------------------------------------------------- 782
Sbjct 2143 AGGTAGAAGAATAAAAGATCCAGTACTTCTTCCTGGGTAAGCAGTTATGACCAGAGATGGAACCGGCAACTCTT 2216
Query 783 ------------------CAAAGAGACA-----------------------CAAA------------------- 796
|||| ||||| ||||
Sbjct 2217 TGGCCAGAAAGCTGTATCCAAA-AGACAGAGAAGATGAGAAACAGGGAGGGCAAAGGCGAAAAAGCAATTGGAC 2289
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2290 ATGATAGCTAGATTTGTTTCAGGAAAACATCCTGCTTTCCAAGGATTTAGATGAATGTTTTTGTTCACTGGTGA 2363
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2364 CTCAGGTAACACGTCTTCAAGAAGCCATAGGGAGGTTGAGGGAGGGAAGTCAAGAAGGGAGGTTGAGGACTGCA 2437
Query 797 ---------------------------------------------------------------AGCACCGAGTG 807
||||||||.|.
Sbjct 2438 CTTTTGATTTACTTCTGACTTCACGAGTCACTTTCTGCCAAAGAAATCTCTCCTTTTGCTTCTAGCACCGACTA 2511
Query 808 GATTTCCTTCAGCTGATGATTGACTCTCAGAATTCAAAAGACTCTGAGACCCACAAAGCTCTGTCTGATCTGGA 881
||||||||||||||||||||||||||.||||||||.|||||..|||||.|||||||||||||||||||||||||
Sbjct 2512 GATTTCCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGAAACTGAGTCCCACAAAGCTCTGTCTGATCTGGA 2585
Query 882 GCTCATGGCCCAATCAATTATCTTTATTTTTGCTGGCTATGAAACCACGAGCAGTGTTCTCTCTTTCATTATAT 955
||||...|||||.|||||.|||||.|||||||||||||||||||||||.|||||||||||.||.||||.|.|||
Sbjct 2586 GCTCGCAGCCCAGTCAATAATCTTCATTTTTGCTGGCTATGAAACCACCAGCAGTGTTCTTTCCTTCACTTTAT 2659
Query 956 ATGAACTGGCCACTCACCCTGATGTCCAGCAGAAAGTGCAGAAGGAAATTGATACAGTTTTACCCAATAAGGCA 1029
|||||||||||||||||||||||||||||||||||.||||.|||||.||||||.|||||||.||||||||||||
Sbjct 2660 ATGAACTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAAAAGGAGATTGATGCAGTTTTGCCCAATAAGGCA 2733
Query 1030 CCACCCACCTATGATACTGTGCTACAGTTGGAGTATCTTGACATGGTGGTGAATGAAACACTCAGATTATTCCC 1103
|||||.|||||||||.|.|||.|||||.|||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 2734 CCACCTACCTATGATGCCGTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACACTCAGATTATTCCC 2807
Query 1104 AGTTGCTATGAGACTTGAGAGGGTCTGCAAAAAAGATGTTGAAATCAATGGGATGTTTATTCCCAAAGGGGTGG 1177
|||||||||.||||||||||||...|||||.|||||||||||||||||||||.|.||.||||||||||||....
Sbjct 2808 AGTTGCTATTAGACTTGAGAGGACTTGCAAGAAAGATGTTGAAATCAATGGGGTATTCATTCCCAAAGGGTCAA 2881
Query 1178 TGGTGATGATTCCAAGCTATGTTCTTCATCATGACCCAAAGTACTGGACAGAGCCTGAGAAGTTCCTCCCTGAA 1251
|||||.|||||||||..||||.||||||.||||||||||||||||||||||||||||||.||||||.|||||||
Sbjct 2882 TGGTGGTGATTCCAACTTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGGAGTTCCGCCCTGAA 2955
Query 1252 AGGTTCAGTAAAAAGAACAAGGACAACATAGATCCTTACATATACACACCCTTTGGAAGTGGACCCAGAAACTG 1325
||||||||| |||||.|||||||.||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 2956 AGGTTCAGT---AAGAAGAAGGACAGCATAGATCCTTACATATACACACCCTTTGGAACTGGACCCAGAAACTG 3026
Query 1326 CATTGGCATGAGGTTTGCTCTCGTGAACATGAAACTTGCTCTAGTCAGAGTCCTTCAGAACTTCTCCTTCAAAC 1399
||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 3027 CATTGGCATGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAAC 3100
Query 1400 CTTGTAAAGAAACACAGATCCCCCTGAAATT----ACGCTTTGGAGGACTTCTTCTAACAGAAAAACCCATTGT 1469
|||||||||||||||||||||||.||||||| |||| .|||||||||||.|.||||||||||||||||
Sbjct 3101 CTTGTAAAGAAACACAGATCCCCTTGAAATTAGACACGC----AAGGACTTCTTCAACCAGAAAAACCCATTGT 3170
Query 1470 TCTAAAGGCTGAGTCAAGGGATGAGACCGTAAGTGGAGCC---------------------------------- 1509
||||||||..||.|||||.||||..|||.|||||||||..
Sbjct 3171 TCTAAAGGTGGATTCAAGAGATGGAACCCTAAGTGGAGAATGAGTTATTCTAAGGATTTCTACTTTGGTCTTCA 3244
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 3245 AGAAAGCTGTGCCCCAGAACACCAGAGATTTCAACTTAGTCAATAAAACCTTGAAATAAAGATGGGCTTAATCT 3318
Query 1510 ------ 1509
Sbjct 3319 AATGTA 3324
