Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06254
- Subject:
- NR_003623.1
- Aligned Length:
- 3592
- Identities:
- 883
- Gaps:
- 2598
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTGCTTGGTTGGAGACACTACCGCTGTCAGCGTCTGCTCCCTGCTACTTCAGTGTTTGTTCAATGTAAGATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAAAAAAAAAAAAAAGTTGGGGGTTGAGGGAGGAGGCAGAGAGGCGGGGGCTTGGGGGAGGAAAGCAGGAAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGTTGTGAGCCTGTCTGGGGTTGAACTCAGCGGAACAAGTTTTTCTTTTCTTCTTTTTTTTTTTTTTTTCTAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTTGGCAAACCGAGGGAGGGAAACACTTAAAAAAAAAGTTTCCATTGTTAGCTAACAAAAAAAAAAAAAAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAAAAAAAGACTTTAACTTCTGCGGGTTAAAGATATACGATTTATTTTCCATCCCTCGACCAAGGTTTGCTGGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTCTAGTTTTATGAAGCTACGTTTGAAAACTGTTTTTAATAAAATTTTGAGTGTGCTAAACAAAGCTGCTGGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGGGATTTTTCTAGCATCGAAAGAGGGGTAATATTCTGCCTAAGCAGAGGGTGTACTTGTACTACAATAGGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTTTTTACAAGGTATATTGCATATATTGCAGGGCATTTCCTTGCACAGTTTTAGGTTTTAATGCACCATGGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAATTTTGGAAGACTGGTTGGACTGTGAGCTGCTGAGTGTCTTGTAGGCTAGATGTGTGAAGGAGCTCTGCATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGCAGTTATCTATAAACGCACACAGAGGCTGTGCTGTTCGCGTATTTTTGCACTCAACTCTCAAAAAGTTATT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTAAGAAAAAGCATAGTCCTGGGGCTGAGGCCCGATCAATGTCTTCAACCACTTGCTCAGTCTCCTGTGAATTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTCCTGCGTTTTCAAGGGTTCTACTCTACCCTCAAATAAAGGGGGGGGGGCACCAGGCAACACTGGAGGGCGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGACACTCCCTGCCCCCATACACACACACTTAAGCCCCACCCGGCACTGCAAGCCTGTTTTGCATAATTCCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAATCTTAAACTCTAGCGTTTAGTGGAAACAGGGAACACAGCTGCGAGGTTTAGGAGATTTAAGAATCCTAAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGTATCCGCCCATATATCCTGATTAGCCAAACCTCGGATGGAAAACCTGACCGCCTGTAGCAAGCAGACAGCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TACTTGTTTATGTAACAATACCGTTGAAGTGAGCAAAGCAACCTGCAGCTTGGTCAGGAAAAGACTCAAGCAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTGAAACCAAGAGCCCTTCCAGCCAAGAATTCCTGGAATCGGACAAGTCCTTTCTGGTTTTGTTTTGTTTTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTGTTTTATTTTTTATTTTTTTTAACATACCCTGGAAGGCTTGAATCTGGTTTCCCTCTCACCCTCAATGGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCTGAATAAAGATGCCTGTCCTGTGTGTGTTCTAGTATTACCGTGAGACAAAGAAGCCACCTCTATCTAGACTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTCCTTTGGTCCCTAGTGGCAAGAAGAGGAGTTACTCAAGCTATGAAGTCTAATCTGAGAGGTGATAAATGCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCAGTAGAAGCAACTGAAGAGCCTAGCAAAGCTCCCACAAATCTCTACCTTGCCGGCCCCTGAGAAGCTGTTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TAGTTGCTATTGTCTCTTGTAGGTGAGTCAGTCAACCTTCCCTAGTGAGAAATGAAGGCTGCTGGAACATGCCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTAGTCTCTGAGTAATCCTTGGCCAGTCAGCTGCTGTCAGACAGGACATGGAGATGGAACTTCTGGCTTGGATG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TAAGGGAGACAAGACGATAGTCCTAACCATGACACTGAGAGGGTTTGGCAGGGTTTAAGTCCCCAGATTGGAAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCAGCACAGCAGGCTTTATATCCTACCATAGAATCTAGCTGGCTCCCACAACGTAAAGCAAAAGTTAACACTTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GACGTAGTGTTTGCTATTTCCAGACACTGGTTTAGGCACATTTTGAATATGTATACAGGACTAAGGACATAGTA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGGTAACAGAATGCCTTCCTAACATGCACCATGCCCTGTGATTGGTCCTCAGCACCGCACAAGCCAGGCTTGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGGCCTAGTGACACGAACCTGTAATCCAGCACTGTAGTGGTGGAGGCAGGAGGATGAGAAGTTCAAAGTCACTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTAGCTACATCAAGAGTTTGAAAGCATCTTAGGCTATCTGAGATCCTGTCTCAGCAATCCCTCCTTACCTCTAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CACACGCACACACACACACACACACACACACACACACACACACACACAAGAGAAAAACAATTTGCATATTGTCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACCTTATAACAACACTGTCAGGTAGGCGTTGTTACAGGCTTCATTTACACTAGAAATTAAAATTCAAAGAGGCA 2294
Query 1 -----------------------------------------------------------------------ATG 3
||
Sbjct 2295 GCTCTCTGCTCCTCCCTGTTCCAGAGACAGTGCATCTTCTTGTGCAGTGCCAGCCTCGTCCCGTAGACAAAAT- 2367
Query 4 GGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGG-------CTGCTTTTA 70
||||||||.|||.||.|||||||||||.|.||||||||||||||||||.|||| |||||
Sbjct 2368 -----GGTGAAGGCCGGTGTGAACGGATTTGGCCATATTGGGCGCCTGGTCACGAGGGTTGCCATCTGCT---- 2432
Query 71 ACTC----TGGTAAAGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTT 140
||| |||.||||||||.||||||||||||||.||||||||||||||||||.||||||||||.||||||||
Sbjct 2433 -CTCTACATGGCAAAGTGGAGATTGTTGCCATCAACGACCCCTTCATTGACCTCGACTACATGGTCTACATGTT 2505
Query 141 CCAATATGATTCCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAATGGAA 214
|||.|||||.||||||||..|.||||||.|.|||||.|||||||||||.||.|||||||||||||||||.||.|
Sbjct 2506 CCAGTATGACTCCACCCACAGTAAATTCAACGGCACAGTCAAGGCTGAAAATGGGAAGCTTGTCATCAACGGGA 2579
Query 215 ATCCCATCACCATCTTCCAGGAGCGAGA------TCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGTAC 282
|.|||||||||||||||||||||||||| ||||.||||.|||||.||||..||.||..|.||||||||.
Sbjct 2580 AGCCCATCACCATCTTCCAGGAGCGAGACTGCCCTCCCCCCAACATCAAATGGGATGAGGCCAGTGCTGAGTAT 2653
Query 283 GTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAAGGCTGGGGCTCATTTGCAGGGGGGAGCCAAAAGGGT 356
|||||||||||.|||||.|||||||||||||||||||||||.|||||.||.|||.||||.||||||||||||||
Sbjct 2654 GTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCGGGGGCCCACTTGAAGGGTGGAGCCAAAAGGGT 2727
Query 357 CATCATCTCTGCCCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCC 430
|||||||||.|.||..|||||.||.||.||||||||.||.||||||||||||||.|||||.|||||||||...|
Sbjct 2728 CATCATCTCCGTCCGTTCTGCCGATGCTCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACTCAC 2801
Query 431 TCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTT 504
|||||||..||||||||||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||
Sbjct 2802 TCAAGATTGTCAGCAATGCATCCTGCACCACCAATTGCTTAGCCCCCCTGGCCAAGGTCATCCATGACAACTTT 2875
Query 505 GGTATCGTGGAAGGACTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCCGG 578
||.||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2876 GGCATTGTAGAAGGGCTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCTGG 2949
Query 579 GAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCTACTGGCGCTGCCAAGGCTGTGG 652
.||.||||||||||||||.||.||||||..||||||||||||||||||.||.|||||.||||||||||||||||
Sbjct 2950 AAAGCTGTGGCGTGATGGTCGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGGCTGTGG 3023
Query 653 GCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAGTG 726
||||.||||||||.||||||||||||||||||||||||||||||||||||||.||.|...||||.|||||..|.
Sbjct 3024 GCAAAGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTTCCTAACCCCAATGTGTCCATC 3097
Query 727 GTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATCAAGAAGGTGGTGAAGCAGGCGTCGGA 800
|||||.|||||.|||||.||.||.|||||||||||.||||||||||||||||||||||||||||||||.||.||
Sbjct 3098 GTGGATCTGACATGCCGCCTGGAGAAACCTGCCAAGTATGATGACATCAAGAAGGTGGTGAAGCAGGCATCTGA 3171
Query 801 GGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACT 874
||||||.|..||||||||||||||||||||||||.|||||||.|.|||||.|||||||||||||.||.||||||
Sbjct 3172 GGGCCCACAGAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGCCTCCTGTGACTTCAACAGCAACTCCCACT 3245
Query 875 CCTCCACCTTCGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAAC 948
|.|||||||||||.||.||||||||||||||.|||||.|||.|||||||||||||||||||||||||||||||.
Sbjct 3246 CTTCCACCTTCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAAT 3319
Query 949 GAATTTGGCTACAGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAG----------------- 1005
||||.||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 3320 GAATATGGCTACAGCAACAGGGTGGTGGACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACCCTGGATAA 3393
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3394 CCCACCCGAGCAAGGACACTGAGAGCAAGAGAGAGGCCTTCAGTTGGTGAGGAGTCCCTATCCCAACTTGGCCC 3467
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3468 CAACATTGAGCATCTCCCTCACAATTTCCACCCCAGACCCTCATAGTAACAGGATGAGCCTAGGGAGCCCTTCC 3541
Query 1006 ---------------------------------------- 1005
Sbjct 3542 TACTCTCTTGAATACCATCAATAAAGTTCGCTGCACCCAC 3581
