Nucleotide Global Alignment

Description

• Query: ccsbBroad304_06267
• Subject: NM_145649.4
• Aligned Length: 1273
• Identities: 960
• Gaps: 134

Alignment

Query    1  ---ATGAACTTTTGGAGGTACTG-CTTTTTTGC------TTTCACTCTGCTCAGCGTGGTCATTTTTGTGAGAT  64
               |||..||.|||||.|.|||| ||||||.||      .||..||||||.|       |.||||||||   ||
Sbjct    1  ATGATGGGCTCTTGGAAGCACTGTCTTTTTAGCGCGTCTCTTATCTCTGCCC-------TGATTTTTGT---AT  64

Query   65  ---TTTACAGTAGCCAATTGAGCCCGCCAAAAAGTTATGAGAAGCTGAACAGTTCCAGTGAAAGGTATT-TTAG  134
               ||||||.|     |.||            |||||||.||    |||          .|||.||.|| |.||
Sbjct   65  TTGTTTACAAT-----ACTG------------AGTTATGGGA----GAA----------TAAACGTTTTCTGAG  107

Query  135  GAAAACTGCCTGT--AA----TCAC-GCCTTAG-AGAAAATGCCAGTC------TTTTTG-TGGGAAAATATAT  193
            |..|.||  ||||  ||    |||| |  |||| ||||   |||.|||      |||||| .||||||.|.|.|
Sbjct  108  GGCAGCT--CTGTCCAATGCTTCACTG--TTAGCAGAA---GCCTGTCATCAGATTTTTGAGGGGAAAGTTTTT  174

Query  194  TA-CCATCA--------------------CCTTTGCGAAGTGTCCCTTGCAAGGATTACCTGACCCAGAA-TCA  245
            || |||.||                    ||||...||||...||  |||.|.||.|||.||...| ||| .||
Sbjct  175  TACCCAACAGAAAATGCATTGAAAACTACCCTTGATGAAGCTACC--TGCTATGAGTACATGGTTC-GAAGCCA  245

Query  246  CTACATCACAAGTCCCCTGTCGGAAGAAGAGGCTGCATTCCCTTTGGCCTATGTCA---TGGTCATCCATAAGG  316
            |||..|.|||....|.||.||.|||||||||||||..||||||||.||.||   ||   ||..||||||.||.|
Sbjct  246  CTATGTAACAGAAACACTCTCTGAAGAAGAGGCTGGGTTCCCTTTAGCTTA---CACAGTGACCATCCACAAAG  316

Query  317  ACTTTGACACCTTTGAAAGGCTCTTTAGGGCTATCTATATGCCCCAAAATGTCTACTGTGTTCACGTGGATGAG  390
            ||||.|.|||.|||||.||||||||.|||||.||.||||||||||||||||||||||||||.|||.|||||.||
Sbjct  317  ACTTCGGCACTTTTGAGAGGCTCTTCAGGGCGATTTATATGCCCCAAAATGTCTACTGTGTGCACCTGGATCAG  390

Query  391  AAAGCCCCAGCTGAGTATAAGGAATCTGTGAGGCAGTTACTGAGTTGCTTCCAAAATGCTTTCATTGCTTCAAA  464
            ||.||..|.|.||..|.|||.|...|.||||..||||||||.||.|||||||.|||||||||..|.|||||.||
Sbjct  391  AAGGCGACGGATGCCTTTAAAGGTGCAGTGAAACAGTTACTCAGCTGCTTCCCAAATGCTTTTCTGGCTTCCAA  464

Query  465  GACAGAGTCTGTGGTTTATGCAGGCATTTCCAGACTCCAGGCTGACCTGAACTGTCTGAAAGACCTTGTCGCCT  538
            ||..|||||.||.||.||||..||.||.|||||.||||||||||||||||||||.|||.||||||||||.||||
Sbjct  465  GAAGGAGTCGGTTGTCTATGGGGGGATCTCCAGGCTCCAGGCTGACCTGAACTGCCTGGAAGACCTTGTGGCCT  538

Query  539  CTGAGGTTCCCTGGAAGTACGTCATCAACACCTGTGGACAAGACTTCCCCCTGAAAACCAACCGGGAGATAGTT  612
            ||||.||||||||||||||.||||||||||||||.||.||||||||.|||||||||||||||.||||.||||||
Sbjct  539  CTGAAGTTCCCTGGAAGTATGTCATCAACACCTGCGGGCAAGACTTTCCCCTGAAAACCAACAGGGAAATAGTT  612

Query  613  CAGCATCTGAAAGGATTTAAAGGGAAAAATATCACCCCAGGGGTGCTGCCTCCTGACCATGCAATTAAGCGAAC  686
            |||.|||||||.||||||||||||||||||||||||||.||.|||||||||||||||||.||..||...||.||
Sbjct  613  CAGTATCTGAAGGGATTTAAAGGGAAAAATATCACCCCCGGAGTGCTGCCTCCTGACCACGCTGTTGGACGGAC  686

Query  687  TAAATATGTCCACCAAGAGC-----ATACAGATAAAGGTGGCTTT--TTTGTGA--AAAATACTAATATTTTGA  751
            ||||||.|||||||||||.|     |..||.|.|||       ||  |..||||  ||||.|..||.|  ||.|
Sbjct  687  TAAATACGTCCACCAAGAACTGTTAAACCACAAAAA-------TTCCTACGTGATTAAAACAACAAAA--TTAA  751

Query  752  AAACTTCACCTCCACATCAGCTGACCATCTACTTTGGCACTGCCTATGTGGCGCTTACCAGAGAGTTTGTCGAC  825
            |||||.|.|||||.|||.|..||...||.|||||||||||.|||||.|||||.||.||.||.||.||||...||
Sbjct  752  AAACTCCTCCTCCTCATGACATGGTGATTTACTTTGGCACGGCCTACGTGGCTCTCACAAGGGACTTTGCTAAC  825

Query  826  TTTGTTCTGCGTGACCAAAGGGC---CA-TTGATCTACTACAATGGTCAAAAGATACCTATAGTCCTGATGAGC  895
            ||.||.||.|..|||||    ||   || ||||..||||....|||||.||.||.|||||.||.||.||.||.|
Sbjct  826  TTCGTCCTCCAAGACCA----GCTCGCACTTGACTTACTCTCCTGGTCCAAGGACACCTACAGCCCCGACGAAC  895

Query  896  ATTTCTGGGTGACACTTAATAGGGTTTCAGGTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTC  969
            ||||||||||||||||.||.|||.||.|.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  896  ATTTCTGGGTGACACTCAACAGGATTCCCGGTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTC  969

Query  970  AGAGCTATAAAGTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACGGCCACTATGTACATGGTATTTGTAT  1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  970  AGAGCTATAAAGTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACGGCCACTATGTACATGGTATTTGTAT  1043

Query 1044  CTATGGAAACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCT  1117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044  CTATGGAAACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCT  1117

Query 1118  ACCCCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAGAACCCTCAATCAGAGTGAAACTGCGATACAA  1191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118  ACCCCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAGAACCCTCAATCAGAGTGAAACTGCGATACAA  1191

Query 1192  CCCAGCTGGTATTTT  1206
            |||||||||||||||
Sbjct 1192  CCCAGCTGGTATTTT  1206