Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06660
- Subject:
- XR_001751293.2
- Aligned Length:
- 2608
- Identities:
- 1629
- Gaps:
- 899
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGAGCCGAGGAAGACGCTCCGATAACCCGTGCGTTTCGTAAGGCTCGGAGCACTTGTACATTTCTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGCGGCGAGCCATTCGCGGCGGCTGCTGCAGCTCCTACTGCATCTTCCTTCTCTTCCTTTCCTCGGGCTCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGTGTGTATGTGTGAGAGTGAGTGTGTGTGTTTTGCAGGTGCGTGGTGTGTCCGTTTTAATTCTGCCCAGTAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGGGACTTGGTGACTTTAGCACCATTTTTTCCTTTTCCTTTTTTTTTTTTGCCTCCCCACCGTCTGTTGCAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGCAAAGTCTCGGAGTCGGAGAGCGCGCCTCGCTTCCAGAGCCCCCGGACCCGGCGAGTCAGCGATCGCCGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCGGCCACCATGCCCGGCAGACCGCGCCACTAGGCGCTCCTCGCGGCTCCCACCCGGCGGCGGCGGCGGCGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCGGCGTCCGCGATGGTTTCAGACGCTGAAGGATTTTGCATCTGATCGCTCGGCGTTTCAAAGGCAGAGGCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCCTCCCCCTTCCCCCCTCCCTCGCCGTCTTTGTTTCCTTCCCCCCCTGCTCTCCCCACTCCCCCCACCCCAC 592
Query 1 ----------------------------------------------ATGGATGTCTCTCTTTGCCCAGCCAAGT 28
||||||||||||||||||||||||||||
Sbjct 593 CCCCCTCTCCTCTCCTCCTCCTCTTTTTTAGAAGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAGT 666
Query 29 GTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCA 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCA 740
Query 103 AATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAGG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAGG 814
Query 177 GCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATAC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATAC 888
Query 251 ACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG 962
Query 325 ACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAA 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAA 1036
Query 399 CCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGG 1110
Query 473 AGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTC 1184
Query 547 AACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTG 1258
Query 621 TGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAATGCTGTTATCACTTGCA 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1259 TGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCA 1332
Query 695 ATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACC 1406
Query 769 AATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCAC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCAC 1480
Query 843 CCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCAC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCAC 1554
Query 917 GTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCA 1628
Query 991 CCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGA 1702
Query 1065 GGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTG 1776
Query 1139 CCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACG 1850
Query 1213 GATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACAC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACAC 1924
Query 1287 TTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCA 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCA 1998
Query 1361 ACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG--GTCCCGTG-----------GCTGTCA---TCAGTGG 1418
|||||||||||||||||||||||||||||||||||| |..||.|| .||..|| |||||.|
Sbjct 1999 ACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGCTGGACCATGTTTTCCTTTTCCCTTCCAAAGTCAGTCG 2072
Query 1419 TGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACC----ACGGCATCACCACGCCCTCGTCACTGGATGCG 1488
|||.|||||| |||||.| ||.||||.|
Sbjct 2073 -----------------------TGCTCCACAT-----TTTGACGGCTT-------------TCCCTGGTT--- 2102
Query 1489 GGGCCCGACACTGTG--GTCATTGGCA---TGACTCGCATCCCTGTC-ATTGAGAACC--CCCAGTAC----TT 1550
||||| .||.|| .|| || ||..||| ||.|| |.|.|.||.| ||||.||| |.
Sbjct 2103 ----------CTGTGAATTCCTT-CCAAGTTG-CTGCCAT--CTTTCTACTAATAAGCTGCCCAATACACTGTA 2162
Query 1551 CCGTCAGGGACACAACTGCCACAAGCCGGACACGTGGGTCTTTTCAAACATAGACAATCATGG--GATATTAAA 1622
|| ||.||| ||.||...|||| ||| ||.||.| ||.||| |||.||.|.
Sbjct 2163 CC-----GGTCAC--CTCCCTGGAGCC-----------TCT-------CACAGCC--TCCTGGATGATCTTCAG 2209
Query 1623 CTTGAA----GGACAATAGAGATCATCTAGTC-------CCATCAACTCACTAT-ATATATGAGGAACCTGAG- 1683
|.|..| |||.|| |.|.||.| |||.|.||| ||.|| .|.|.|.|| .||||.|
Sbjct 2210 CCTCTATTCTGGAAAA--------ACCAAGGCTTACACACCACCCACT-ACAATGCTCTTTCAG--CCCTGTGC 2272
Query 1684 -GTCCAGAGTGG----GGAAG--------TGTC-----TTACC-------------CAAG-GTCACATGGTTTC 1725
.||||| |||| ||..| |||| |.||| |||| .|.|.||.|||
Sbjct 2273 TCTCCAG-GTGGCCTTGGCTGTTACATCTTGTCGTTCATCACCCCTACCACCTTTGCAAGATTAAGATTGTT-- 2343
Query 1726 AGAGAAATTATGTTGAA----TCCAATAAGCCTTCCCGGACATTCCAAGCCTCTTAACCATGGC---------A 1786
|..||..||||| || |.|..||.|||| ||.||||| |||| .||||.|| |
Sbjct 2344 --AATAAAGATGTT-AACACGTTCTCTAGGCCT-------CACTCCAA-CCTC---GCCATAGCTGGCCCGCTA 2403
Query 1787 TCTATGTTGAGGATGTCAATGTTTATTTCAGCAAAG-GACGTCATGGCTTT----------------------- 1836
|| ||.||...|| ||.|.| ||.|||| .||..||| |||
Sbjct 2404 TC-----TGGGGCCCTC--TGCTCA----AGAAAAGAAACTGCAT---TTTATCATAAGTTCTGTTGTTTACCG 2463
Query 1837 ------------------ 1836
Sbjct 2464 TCTCCTGGTGAGTATTTC 2481
