Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06660
- Subject:
- XR_002957645.1
- Aligned Length:
- 2610
- Identities:
- 1605
- Gaps:
- 925
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGAGGGAGCCGAGGAAGACGCTCCGATAACCCGTGCGTTTCGTAAGGCTCGGAGCACTTGTACATTTCTGCAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGCGGCGAGCCATTCGCGGCGGCTGCTGCAGCTCCTACTGCATCTTCCTTCTCTTCCTTTCCTCGGGCTCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGTGTGTATGTGTGAGAGTGAGTGTGTGTGTTTTGCAGGTGCGTGGTGTGTCCGTTTTAATTCTGCCCAGTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGTGGGACTTGGTGACTTTAGCACCATTTTTTCCTTTTCCTTTTTTTTTTTTGCCTCCCCACCGTCTGTTGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCTGCAAAGTCTCGGAGTCGGAGAGCGCGCCTCGCTTCCAGAGCCCCCGGACCCGGCGAGTCAGCGATCGCCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGCCGGCCACCATGCCCGGCAGACCGCGCCACTAGGCGCTCCTCGCGGCTCCCACCCGGCGGCGGCGGCGGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGCGGCGTCCGCGATGGTTTCAGACGCTGAAGGATTTTGCATCTGATCGCTCGGCGTTTCAAAGGCAGAGGCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCCCTCCCCCTTCCCCCCTCCCTCGCCGTCTTTGTTTCCTTCCCCCCCTGCTCTCCCCACTCCCCCCACCCCA 592
Query 1 -----------------------------------------------ATGGATGTCTCTCTTTGCCCAGCCAAG 27
|||||||||||||||||||||||||||
Sbjct 593 CCCCCCTCTCCTCTCCTCCTCCTCTTTTTTAGAAGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAG 666
Query 28 TGTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGC 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGC 740
Query 102 AAATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAG 814
Query 176 GGCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATA 888
Query 250 CACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT 962
Query 324 GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAA 1036
Query 398 ACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTG 1110
Query 472 GAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCT 1184
Query 546 CAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGT 1258
Query 620 GTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAATGCTGTTATCACTTGC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1259 GTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGC 1332
Query 694 AATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGAC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGAC 1406
Query 768 CAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCA 1480
Query 842 CCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCA 1554
Query 916 CGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCC 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCC 1628
Query 990 ACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAG 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAG 1702
Query 1064 AGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATT 1776
Query 1138 GCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCAC 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAG------- 1843
Query 1212 GGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACA 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 -----------------TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACA 1900
Query 1286 CTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATC 1974
Query 1360 AACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG--GTCCCGTG-----------GCTGTCA---TCAGTG 1417
||||||||||||||||||||||||||||||||||||| |..||.|| .||..|| |||||.
Sbjct 1975 AACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGCTGGACCATGTTTTCCTTTTCCCTTCCAAAGTCAGTC 2048
Query 1418 GTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACC----ACGGCATCACCACGCCCTCGTCACTGGATGC 1487
| |||.|||||| |||||.| ||.||||.|
Sbjct 2049 G-----------------------TGCTCCACAT-----TTTGACGGCTT-------------TCCCTGGTT-- 2079
Query 1488 GGGGCCCGACACTGTG--GTCATTGGCA---TGACTCGCATCCCTGTC-ATTGAGAACC--CCCAGTAC----T 1549
||||| .||.|| .|| || ||..||| ||.|| |.|.|.||.| ||||.||| |
Sbjct 2080 -----------CTGTGAATTCCTT-CCAAGTTG-CTGCCAT--CTTTCTACTAATAAGCTGCCCAATACACTGT 2138
Query 1550 TCCGTCAGGGACACAACTGCCACAAGCCGGACACGTGGGTCTTTTCAAACATAGACAATCATGG--GATATTAA 1621
.|| ||.||| ||.||...|||| ||| ||.||.| ||.||| |||.||.|
Sbjct 2139 ACC-----GGTCAC--CTCCCTGGAGCC-----------TCT-------CACAGCC--TCCTGGATGATCTTCA 2185
Query 1622 ACTTGAA----GGACAATAGAGATCATCTAGTC-------CCATCAACTCACTAT-ATATATGAGGAACCTGAG 1683
.|.|..| |||.|| |.|.||.| |||.|.||| ||.|| .|.|.|.|| .||||.|
Sbjct 2186 GCCTCTATTCTGGAAAA--------ACCAAGGCTTACACACCACCCACT-ACAATGCTCTTTCAG--CCCTGTG 2248
Query 1684 --GTCCAGAGTGG----GGAAG--------TGTC-----TTACC-------------CAAG-GTCACATGGTTT 1724
.||||| |||| ||..| |||| |.||| |||| .|.|.||.|||
Sbjct 2249 CTCTCCAG-GTGGCCTTGGCTGTTACATCTTGTCGTTCATCACCCCTACCACCTTTGCAAGATTAAGATTGTT- 2320
Query 1725 CAGAGAAATTATGTTGAA----TCCAATAAGCCTTCCCGGACATTCCAAGCCTCTTAACCATGGC--------- 1785
|..||..||||| || |.|..||.|||| ||.||||| |||| .||||.||
Sbjct 2321 ---AATAAAGATGTT-AACACGTTCTCTAGGCCT-------CACTCCAA-CCTC---GCCATAGCTGGCCCGCT 2379
Query 1786 ATCTATGTTGAGGATGTCAATGTTTATTTCAGCAAAG-GACGTCATGGCTTT---------------------- 1836
||| ||.||...|| ||.|.| ||.|||| .||..||| |||
Sbjct 2380 ATC-----TGGGGCCCTC--TGCTCA----AGAAAAGAAACTGCAT---TTTATCATAAGTTCTGTTGTTTACC 2439
Query 1837 -------------------- 1836
Sbjct 2440 GTCTCCTGGTGAGTATTTCC 2459
