Nucleotide Global Alignment

Description

Query:
ccsbBroad304_06700
Subject:
NM_001322059.1
Aligned Length:
2313
Identities:
1865
Gaps:
417

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGGCTCGGTCTCCTCCGCGCTGGCGCGGTCCCGCAAAGCCGTAGTGCAGTCGGGCTCGTTGCCACCGCAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAGGCGCCACCGGCTGCTCCCGTTGCTGTCGGAGACCCATTCGCGCTCCCTAAAACCCAGAGGCCGGGACCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCGTGGGGAGACACTCTCCCCTCCCGTAGCCTGTGAGGCACAGCCCGCGGCGAGACATCGAGAAGAGCTGCCG  222

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |.|.||
Sbjct  223  AAGTTGGCGAGGCAGGAGCTGTCCCCGGTGCTGAAGCGTGAGGCGAGTATGTCCCAGCCCTGCTGGCCACGAAG  296

Query    7  TCGC----CA------ACAAA-------GGAGATTGAAGAATTTGAGAGC------------------------  39
            .|||    ||      .||||       |||||  .||||||...|||.|                        
Sbjct  297  CCGCAGCGCAGCGGTTGCAAATGAAGCTGGAGA--CAAGAATGCCAGACCACTGGCCCGCTTCTCTCGGTCTAA  368

Query   40  -------AACTCTCT---GAAATACCTGCAACCGGA-------ACAG--------ATCGAGAA-----------  77
                   ||||.|||   |||.|.||| ||.|  ||       ||||        |..|||||           
Sbjct  369  GTCACAGAACTGTCTGTGGAACTCCCT-CATC--GATGGGCTCACAGGGAATGTCAAGGAGAAGCCAAGGCCAA  439

Query   78  -AATCTG-------GCTTCGGCTCC--GCGG--------GCTGAGGAAAT-----------ATA----------  112
             ||| ||       .|.|||.|.||  |.||        |||||.|||.|           |||          
Sbjct  440  CAAT-TGTCCATGACCCTCGACCCCCAGAGGAGATCCTAGCTGATGAATTGCCACAGCTGGATAGCCCAGAAGT  512

Query  113  -----AGAAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATC  181
                 .|||.||.|||...|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  CTTGGTGAAGACATCCTTCAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATC  586

Query  182  TTAAGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGAT  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TTAAGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGAT  660

Query  256  ACAGAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTT  329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  ACAGAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTT  734

Query  330  CACGCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGC  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  CACGCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGC  808

Query  404  AGGCTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTT  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  AGGCTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTT  882

Query  478  ATTGAGGCATTAAAGGATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGC  551
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  883  ATTGAGGCATTAAAGGATGTGGACAAGTGGTCCTTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGC  956

Query  552  ACTGAAATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCAC  625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  ACTGAAATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCAC  1030

Query  626  TTGTCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCT  699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  TTGTCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCT  1104

Query  700  GCCGATGTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGAT  773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  GCCGATGTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGAT  1178

Query  774  CTTTGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGA  847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CTTTGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGA  1252

Query  848  CTCGGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGC  921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  CTCGGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGC  1326

Query  922  CTTCTGCAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTT  995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  CTTCTGCAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTT  1400

Query  996  GGTAATTGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGC  1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  GGTAATTGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGC  1474

Query 1070  AGCAGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCA  1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  AGCAGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCA  1548

Query 1144  AAAGCATGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGC  1217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  AAAGCATGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGC  1622

Query 1218  AGAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCA  1291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  AGAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCA  1696

Query 1292  TTGATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGAT  1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  TTGATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGAT  1770

Query 1366  GAAACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCG  1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  GAAACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCG  1844

Query 1440  ATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGA  1513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  ATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGA  1918

Query 1514  GCTTTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAG  1587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919  GCTTTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAG  1992

Query 1588  AAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAG  1661
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1993  AAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGCCTGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAG  2066

Query 1662  CCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAA  1735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067  CCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAA  2140

Query 1736  CACGGGCAAACAAAAGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAG  1809
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 2141  CACGGGCAAACAAAAGTGACAACCCTCGTGGGAAAAACTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAG  2214

Query 1810  AATGGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAA  1883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215  AATGGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAA  2288

Query 1884  AACAGATGATTCACAAGAG  1902
            |||||||||||||||||||
Sbjct 2289  AACAGATGATTCACAAGAG  2307

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