Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06700
- Subject:
- XM_006505730.3
- Aligned Length:
- 2607
- Identities:
- 1650
- Gaps:
- 729
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGGTTCTGTCTCCTCCGTGCTGGCGCGGTCCCGCAACACCGTCGTGCAGCCGGGATCGTCGCCGCCGCATCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAAGTGCCGCTCGCTGCTCCCGCGTCTCTCAAAGACTCTAGAACCCAGCGTCGGGTACTCGGGCATCAAGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTTCAGACCTTCCCCAGCCTGGGAACCGCCGCCGGCCAAGCACAGCCAGCAGGAGCTTCCAAAGTTGGAGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGAGCTGTCCCCCGTGCGGAGGCGTTTGCCAGCTATGTCCCAGTCCTCCCCCAGCGACAGCCCAGGAGAGAC 296
Query 1 ---------------------------------------------------------------ATGGAGTCGCC 11
| ||||
Sbjct 297 TGGCACTGGGAAGACAGAAGAGTTGAACACCCAGACAGACGCCACAGAAAAACAGCCAGCTGCA-GGAG----- 364
Query 12 AACAA--------------AGGAGATTGAAGAAT----------TTG------------------------AGA 37
||||| |||||| .|||||| ||| |||
Sbjct 365 AACAAGTTGCAAATGAAGCAGGAGA--CAAGAATGCCAGACCACTTGCTCGCTTCTCCCGGTCTAAGTCACAGA 436
Query 38 ---------GCAACTCTCT-----------------GAAATA-----------------CCTGCAA----CCGG 64
|.|||||.|| |.|||| ||..||| ||.|
Sbjct 437 ACTGCCTGTGGAACTCCCTCATTGATGGGCTCACTGGGAATATTAAGGAGAAACCACGGCCAACAATTGTCCAG 510
Query 65 AACA---GATC-----GAGAAAATCTGGC-------TTCGGCTCCGCGGGCTGAG----GAAATAT-----AAG 114
.||| ||.| .|||||.|||||| || |.|.|.||.||.| || |||...| |||
Sbjct 511 GACACGCGACCCCCAGAAGAAATTCTGGCAGATGAGTT-GCCACAGCTGGAT-AGCCCAGAAGCTTTGGTGAAG 582
Query 115 AAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAA 188
|.|.|.|.| ||.|||||||||||||||||.||||||||..||||.||.||.||.||||||||.||||||||
Sbjct 583 ACATCTTTC---AGGTTACGGTCTTTGGTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGAA 653
Query 189 GAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGG 262
||||.|||||||||||||||||||||||||||||||.||||||||||||||||||.||||.|||||||||||||
Sbjct 654 GAATCTGGAATATGCAGCCACAGTGCTTGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATACAGAGG 727
Query 263 ATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGG 336
|||||||.|||||||||||.|||||||||||||||||.||.||.||.||.||||||||||||||||||||.|||
Sbjct 728 ATGAGCTTAGTGACATTCAATCAGATGCTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACGG 801
Query 337 CAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGG 410
|||||||||||||||||.|||||.||.||.|||||||||.||||||||||||||||.||.||.|||||.|||||
Sbjct 802 CAGATGGGGATGATGCTTAGGAGAAGTGATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTGG 875
Query 411 GATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGG 484
||||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||.|||||.||.||.|
Sbjct 876 GATATTTGTGGAAAGAATGTACAGACGGACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATG 949
Query 485 CATTAAAGGATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAA 558
||||.|||||||||||.|.||||||.||.||.||||||||||||||||||||||||||.||||||||||||||.
Sbjct 950 CATTGAAGGATGTGGATACGTGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAG 1023
Query 559 TTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTC 632
||.||||||||||||.||||||||||||||||.||||||||||||||.|||||.||.|||||||||||||||||
Sbjct 1024 TTCATTTTCTATGAATTACTCACACGTTATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTC 1097
Query 633 ATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATG 706
|||||||||||||||.||||||||.||||||||||||||||||||||||||||||.|.|||||.||.||.||.|
Sbjct 1098 ATTTGTGGAGGCCCTCGAAGTGGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACG 1171
Query 707 TTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCT 780
|.||||||||.||||||||||||||.||||||||||||||.||.|||||||||||.|||||||||||||||||.
Sbjct 1172 TCACACAGACTGTGCATTACCTCCTTTATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCA 1245
Query 781 ATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTC 854
||||||||.||.|||||||||||||||||.||.|||||.|||||.||.||||||||||||||||||||||||||
Sbjct 1246 ATAATCTTTTCGGCTGCCATCCATGACTATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTC 1319
Query 855 TGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGC 928
.|||||||||||.|||||.||||||||||||||.||||||||.|||||..|.||||||||.||.||||||||||
Sbjct 1320 AGATCCAGCTATCCTGTACAATGACAGATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGC 1393
Query 929 AAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATT 1002
|.||.|||||.||.|||||||||.||.|||||||||||||||||||||||||||||||||||||.|||||.|||
Sbjct 1394 AGGAAGACGAAGAGATGAATATTCTGGTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATT 1467
Query 1003 GAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCC 1076
||.|||||.|||||||||||||||||.|||||.|||||.|||||||||||.||||||||.||.||||||||.||
Sbjct 1468 GAGATGGTAATGGCCACAGATATGTCCTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACC 1541
Query 1077 AGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCAT 1150
||||||.|||||.|||||.||||||||||||||.|||.|.||.||||||||.||.||.|||||.||.|||||||
Sbjct 1542 AGAAGCAATTGAGAAGCCGAAAGCCTTATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCAT 1615
Query 1151 GGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTG 1224
|||||||.||.||.||||||||.|||||.|||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1616 GGGACCTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCTG 1689
Query 1225 GGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTT 1298
||||||||.|||||||||||.||||||.|||||||.||.||||||||||||||||||||.|||||.|||||.||
Sbjct 1690 GGGCTGCCATTTTCTCCTCTTTGTGACAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACTT 1763
Query 1299 CATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCT 1372
|||.|||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||.||
Sbjct 1764 CATTGTGGAGCCCACCTTCACTGTGCTCACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGCT 1837
Query 1373 CTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGT 1446
|.||.||||||||||||||.||||||.|.||.||||||||.|||||||.|||.||||||||.||||||||.|||
Sbjct 1838 CCCAGACTGGTGGGACAGGGCAGAGGAGATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGGT 1911
Query 1447 GTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTTA 1519
|||||||..|||||.|||||.||||||||.||.||||||||||||||||| ||| ||||||||||||||.||||
Sbjct 1912 GTCAAGAGTTCTGGGTCAGATGGAAGTGCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTTA 1984
Query 1520 AAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCC 1593
||||.||||||||.||.||||||||.||||||||||||.|.|||.|.|||||||||||||||||.||.||.|||
Sbjct 1985 AAGCCACTTGGACTGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGCC 2058
Query 1594 AAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGC 1667
|||||||||||.||.||.|||||||||.||||.||.|||||..||||||||||||||||||||||||||||.||
Sbjct 2059 AAGAAGGAAGCTGAAGAGAAGGCTCGCCTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAGC 2132
Query 1668 TGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGG 1741
||||.|||||.||.|..||||||..|||||||||||.||.||||||.|.||.|.||||||||||||||||||
Sbjct 2133 TGAACAAGGCACAACCAGCAAAGGCGAGAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG-- 2204
Query 1742 CAAACAAAAGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGT 1815
|||..||||.||||||||||||||.||.|||||||..||.||| .||||.|||.||||.|||||.|||
Sbjct 2205 ----CAAGGGTGATAACCCTCGTGGGAAGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGGT 2271
Query 1816 GACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGA 1889
|||||.|||||.||||||||||||.|||||||||||||||||||.||||.|||||||||.||||||||||||||
Sbjct 2272 GACTTGAAAGACGGTAAAAATAAGGCAGACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAGA 2345
Query 1890 TGATTCACAAGAG------------------------------------------------------------- 1902
||.|.|| ||||.
Sbjct 2346 TGGTACA-AAGAAGCGTTCTCATGGCTCACCTGCTCCGAGCACTAGTTCCACAAGTCGCATTACCTTGCCAGTC 2418
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2419 ATCAAGCCTCCTTTGCGTCACTTTAAGCGTCCTGCTTATGCATCTAGCTCCTATGCACCTTCCGTCCCGAAGAA 2492
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2493 AACTGATGATCATCCTGTAAGATACAAGATGCTGGATCAGCGGATCAAGATGAAAAAGATCCAGAACATCTCTC 2566
Query 1903 ----------------- 1902
Sbjct 2567 ATCACTGGAACAAAAAA 2583
