Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06700
- Subject:
- XR_001744803.1
- Aligned Length:
- 3024
- Identities:
- 1862
- Gaps:
- 1128
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTTAAAACCGGTGTATGCCACTTCACAGCATTTGCACTTCGACCGAGAGCAGCCCTGTCTTTTGCCTGAGGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTCACAATGGAGTTGCCATTGTCAGCAAACAATTAGAGTGCCCGCTTTTAGGGGGCCAGCTGAGAGGTTGTA 148
Query 1 -----------------------ATGGAGTC-----------------GCCAA-------CAAA-------GGA 20
.||||||| |||.| |||| |||
Sbjct 149 TTTGCTGTGGGAAACCCTGGGCTTTGGAGTCACACGCAGATTTATCATGCCCATTAGTTGCAAATGAAGCTGGA 222
Query 21 GATTGAAGAATTTGAGAGC-------------------------------AACTCTCT---GAAATACCTGCAA 60
|| .||||||...|||.| ||||.||| |||.|.||| ||.
Sbjct 223 GA--CAAGAATGCCAGACCACTGGCCCGCTTCTCTCGGTCTAAGTCACAGAACTGTCTGTGGAACTCCCT-CAT 293
Query 61 CCGGA-------ACAG--------ATCGAGAA------------AATCTG-------GCTTCGGCTCC--GCGG 98
| || |||| |..||||| ||| || .|.|||.|.|| |.||
Sbjct 294 C--GATGGGCTCACAGGGAATGTCAAGGAGAAGCCAAGGCCAACAAT-TGTCCATGACCCTCGACCCCCAGAGG 364
Query 99 --------GCTGAGGAAAT-----------ATA---------------AGAAAACGTCCCAGAGATTACGGTCT 138
|||||.|||.| ||| .|||.||.|||...||||||||||||
Sbjct 365 AGATCCTAGCTGATGAATTGCCACAGCTGGATAGCCCAGAAGTCTTGGTGAAGACATCCTTCAGATTACGGTCT 438
Query 139 TTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGT 512
Query 213 GCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAG 586
Query 287 ATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 ATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGG 660
Query 361 AGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAG 734
Query 435 ACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGT 808
Query 509 CATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACA 582
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CCTTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACA 882
Query 583 CGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGG 956
Query 657 ATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCC 1030
Query 731 TCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCAT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCAT 1104
Query 805 GACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGA 1178
Query 879 CAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTT 1252
Query 953 TGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATG 1326
Query 1027 TCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGC 1400
Query 1101 CTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAA 1474
Query 1175 TGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGT 1548
Query 1249 GACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGT 1622
Query 1323 GCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGA 1696
Query 1397 GGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGA 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 GGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGA 1770
Query 1471 AGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCA 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCA 1844
Query 1545 CATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTC 1918
Query 1619 GCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCT 1692
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GCCTGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCT 1992
Query 1693 GAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGG 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGG 2066
Query 1767 GAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGA 1840
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 GAAAAACTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGA 2140
Query 1841 CAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCACAAGAG------------ 1902
|||||||||||||||||||||||||||||||||||||||||||||||||||...||.||.||
Sbjct 2141 CAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGGCACAAAACAGCGTTCTCACGGC 2214
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2215 TCACCAGCCCCAAGCACCAGCTCCACGTGTCGCCTTACGTTGCCAGGAAGTCTTCTGCAATTTCCTTGGAGGAG 2288
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2289 TCTCATCTTGCTGGAAGGACCTGCTACTGAAGGTGAGGATACACCTATCCTTTTCTTCTTCAGGAAGGAAGAAT 2362
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2363 ATATGGATGCTCTATTTCCTGAGGCCTTTCTTATCTGAAGTGTTGCTTCATATGACAACTTGAAAGGCACACAA 2436
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2437 TTCGTGAGTTGCAAAATTTCTACTTTAAAATACAACTATGCACCTCCACTATCTTCTGGCATCTAATATGAGGA 2510
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2511 TGCTTTTTGAGAGGCACTGCATGGACAACGGGGAATACTGAAAGACACAGCCCAGCCATTGAGGAGCTTCTCCA 2584
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2585 GTGGACAAAATCCAAATAAGGATAAAATAGATGGCTTTTCTTCCTGAAAGATGGCAAATGCTTCAAAAACTGAA 2658
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2659 CAAGTTGATAAATTATACCGGGACGAGCTCACCCACCACTGAAGTGCAACCATCTTTGGGGTAGCTCCCTACAG 2732
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2733 CTGTTTACCACCATGCTGTGGTGCCTAGGAGCAGTCTGTCATAAAGAAAAGAAGAATGCACTTGGAATATAAGC 2806
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2807 AACAGGCAATTTGCAGAAGAGAAGATATAATTATCTAGATTGGAATATGACCAGGACAACCATACCATTCCCAC 2880
Query 1903 -------------------------------------------------------------------------- 1902
Sbjct 2881 AAACCACCAAGAAGGCAAAAAGTAAGCAAGAGAGGTTTGGGTATCTGGTATCTGTTAAGAGAGGTTTGGATATC 2954
Query 1903 ---------------------------------------------------------------- 1902
Sbjct 2955 TGATAATTGTTTGAATCACAATCTAATGTTTTTATGCTACCAAAAAATGAAATTTAGAAACCTT 3018
