Nucleotide Global Alignment

Description

Query:
ccsbBroad304_06819
Subject:
NM_001161837.1
Aligned Length:
1652
Identities:
1086
Gaps:
421

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCATCGCAACACTCGGTCAGTTTCCACACCGACACTGCAAATGGATATAACCAAGCTGAACATAACCCTGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGATCTTCCGCCAAGGAGTAGCTGCAGCCCTGGGACTCTTACCTCAGCAAGTGCACATTAACCGGCTCATTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAAAGAAGAACCAGGTTGAGTTGTTTGTGTCTCCCGGAAACCGGAAACCAGGAGAAACGCAGGCCCTGCAGGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGAAGTGCTGCGTTCCCTCAATGTGGATGGTTTGCATCAGAGTTTACCACAGTTTGGAATTACAGACGTCGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCTGAGAAAAATGTTTTACAAGGGCAGCACGAAGCAGACAAGATCTGGAGCAAAGAAGGATTTTACGCTGTCG  370

Query    1  -----------------------------------------ATGATTCTTCACAGATTAAAAGAAAGATTTCAG  33
                                                     ||||||.||.||||.|||||||||||..|||||
Sbjct  371  TCATCTTCCTCAGCATCTTTATCATCATAGTAACCTGTTTGATGATTATTTACAGGTTAAAAGAAAGGCTTCAG  444

Query   34  CTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTC  107
            |||||||||||||||||.|||||||||||||||||||||||||||||.|||||..||...||||.|||||..||
Sbjct  445  CTTTCCTTAAGACAAGATAAAGAGAAAAACCAGGAGATCCACCTATCACCCATTGCACGGCAGCAAGCACAATC  518

Query  108  CGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTC  181
            .|||||.|||||...|||||||||||||||.||.||.|||||.||||||||.|||||.||.||.||||||||||
Sbjct  519  GGAGGCCAAGACGACCCACAGCATGGTCCAGCCCGATCAGGCGCCAAAGGTGCTGAACGTGGTTGTGGACCCTC  592

Query  182  AAGGCCGAGGTGCTCCTGAGA-TCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCC  254
            ||||||.|.|..||||||||| ||.||.| |.||||.|.||||||||.|||||||||||.||||.|||||||||
Sbjct  593  AAGGCCAATGCACTCCTGAGATTCGAAAC-AGCACCTCCACCTCTGTCTGCCCTTCTCCCTTCAGAATGAAGCC  665

Query  255  CATAGGACTTCAAAAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAAC  328
            |||||||||.||..||.||.||||.|||||.|||||||||||..||||||||||||||.||||.|...|.||||
Sbjct  666  CATAGGACTCCAGGAGCGACGAGGTTCCAATGTATCTCTTACGCTGGACATGAGTAGCCTGGGCAGTGTGGAAC  739

Query  329  CCTTTGT----GTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCT  398
            |||||||    ||||    ||||.||.||||||||||||||.|||||.||.||||||||||||||||||.||||
Sbjct  740  CCTTTGTGGCCGTCT----CAACCCCCCGGGAGAAGGTAGCCATGGAATACCTGCAGTCAGCCAGCCGAGTTCT  809

Query  399  CACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGA  472
            ||||.||||.||||||||||||||||||||||||||.||..||||.||||||||||||||||||||||||||||
Sbjct  810  CACACGGTCACAGCTGAGGGACGTCGTGGCAAGTTCCCACCTACTTCAAAGTGAATTCATGGAAATACCAATGA  883

Query  473  ACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAAT  546
            |.|||||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||||||||.||||||
Sbjct  884  ATTTTGTGGATCCCAAAGAAATTGATATTCCACGTCACGGAACTAAAAATCGTTATAAGACCATTTTGCCAAAT  957

Query  547  CCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATAT  620
            |||||||||||||||||.|||||||||||||||.||||||||||.|||||.||.|||||.||||||||.|||||
Sbjct  958  CCCCTCAGCAGAGTGTGCTTAAGACCAAAAAATATAACCGATTCCTTGAGTACTTACATAAATGCTAACTATAT  1031

Query  621  TAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCT  694
            |.|||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||.|||.||||.||||
Sbjct 1032  TCGGGGCTACAGTGGTAAGGAGAAAGCCTTCATTGCCACCCAGGGCCCCATGATCAACACTGTGAATGACTTCT  1105

Query  695  GGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGT  768
            ||||||||||.|||||.||||||||.||.||||||||.||||||||.|||||||||||.|||||||||||||||
Sbjct 1106  GGCAGATGGTGTGGCAAGAAGACAGTCCCGTGATTGTGATGATCACGAAACTCAAAGAGAAAAATGAGAAATGT  1179

Query  769  GTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGA  842
            |||||.||||||||.||||||||||||||.||.||.||.||||||||||||||.|.|.||||.|..||||||||
Sbjct 1180  GTGCTCTACTGGCCAGAAAAGAGAGGGATTTACGGCAAGGTTGAGGTTCTGGTCACCGGTGTGACCGAATGTGA  1253

Query  843  TAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCT  916
            ||||||||||||.||.|||||.|||||||||||||||||.||||||||||||||||||||.|||||||||||.|
Sbjct 1254  TAACTACACCATCCGCAACCTCGTCTTAAAGCAAGGAAGTCACACCCAACATGTGAAGCACTACTGGTACACTT  1327

Query  917  CATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGA  990
            |||||||.|||||.||||||||||||||||||||||||||.||.|||||||||.|||||||.||||||||||||
Sbjct 1328  CATGGCCGGATCATAAGACTCCAGACAGTGCCCAGCCCCTTCTGCAGCTCATGTTGGATGTGGAAGAAGACAGA  1401

Query  991  CTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGC  1064
            ||.||.||..|.||||||||||||||||||||||||||||||||.||.||.||.|||||.||||||||.||.||
Sbjct 1402  CTGGCCTCTGAAGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCGGGGATTGGGAGAACTGGGTGTTTCATCGC  1475

Query 1065  TACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTA  1138
            |||||||||||||||||||||..|||||||||||||||||||.||.||||||||.||||||||||||||||||.
Sbjct 1476  TACATCCATTGGCTGTCAACAATTGAAAGAAGAAGGAGTTGTAGACGCACTAAGTATTGTCTGCCAGCTTCGTG  1549

Query 1139  TGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGC  1212
            |.||.||.|||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||..||||||
Sbjct 1550  TAGACAGGGGTGGTATGGTCCAAACCAGCGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTTCGAGAGC  1623

Query 1213  AGACTTTCAGCAGAGACTGTCCAG  1236
            |||||||||.||||.||||||.||
Sbjct 1624  AGACTTTCACCAGAAACTGTCGAG  1647

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