Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06854
- Subject:
- XR_926295.3
- Aligned Length:
- 5714
- Identities:
- 1033
- Gaps:
- 4676
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCTATGTAGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCACCCAACTTGGTCTCCCAAAGTGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGATTATAGGCGTGATCCACTGTGCCTGGCCCTGTCATTTCTTTTCTCAGAGAGGATAACAATTTATTTGTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACAGAAAGTTTTAAATGTTGAAGGAGATTGGCCTGGAAATATGCTTTTGGGGAGCAACACGGTCTGAGCCAGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCCAGATACAGCCCATTCTTCTGGCCAGTCTTGCCCTTTGCTCCTGATTCTCCAAGCTGTACCCAGAGCTTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTCAGCATGTACCTGGAGGCTGCTTTTGACCATGTTTTGAGAGTGGCATGGCTTTATCTAATGGGATGAAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGGCTAAAGAGATTAGCAAAATGTCTTGTGGATCCCACTTTTAATCTGCAGCGTTCAGGCTGCCCCTTCTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGGGAAGGGCGCTGAAGAAACAACGCCCAGGACCAGGACTATCCCCTGCTCAAGCTGTGATTCCGAGACCCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCACCACTACTGCATTCACGGGGATCCCAGGCTAGTGGGACTCGACATGGGTAGCCCCCAGGGCAGCTCCCTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGCTTGGGCCATCTGCACTTTTCCCAAGGCCCTAAGTCTCCGCCTCTGGGCTCGTTAAGGTTTGGGGTGGGAG 666
Query 1 ---------------------------------------ATGGCGCTACTGAAAGTCAAGTTTGACCAGAAGAA 35
|||||||||||||||||||||||||||||||||||
Sbjct 667 CTGTGCTGTGGGAAGCAACCCGGACTACACTTGGCAAGCATGGCGCTACTGAAAGTCAAGTTTGACCAGAAGAA 740
Query 36 GCGGGTCAAGTTGGCCCAAGGGCTCTGGCTCATGAACTGGTTCTCCGTGTTGGCTGGCATCATCATCTTCAGCC 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCGGGTCAAGTTGGCCCAAGGGCTCTGGCTCATGAACTGGTTCTCCGTGTTGGCTGGCATCATCATCTTCAGCC 814
Query 110 TAGGACTGTTCCTGAAGATTGGACTCCGAAAGAGGAGCGATGTGATGAATAATTCTGAGAGCCATTTTGTGCCC 183
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAGGACTGTTCCTGAAGATTGAACTCCGAAAGAGGAGCGATGTGATGAATAATTCTGAGAGCCATTTTGTGCCC 888
Query 184 AACTCATTGATAGGGATGGGGGTGCTATCCTGTGTCTTCAACTCGCTGGCTGGGAAGATCTGCTACGACGCCCT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACTCATTGATAGGGATGGGGGTGCTATCCTGTGTCTTCAACTCGCTGGCTGGGAAGATCTGCTACGACGCCCT 962
Query 258 GGACCCAGCCAAGTATGCCAGATGGAAGCCCTGGCTGAAGCCGTACCTGGCTATCTGTGTCCTCTTCAACATCA 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 963 GGACCCAGCCAAGTATGCCAGATGGAAGCCCTGGCTGAAGCCGTACCTGGCTATCTGTGTTCTCTTCAACATCA 1036
Query 332 TCCTCTTCCTTGTGGCTCTCTGCTGCTTTCTGCTTCGGGGCTCGCTGGAGAACACCCTGGGCCAAGGGCTCAAG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCCTCTTCCTTGTGGCTCTCTGCTGCTTTCTGCTTCGGGGCTCGCTGGAGAACACCCTGGGCCAAGGGCTCAAG 1110
Query 406 AACGGCATGAAGTACTACCGGGACACAGACACCCCTGGCAGGTGTTTCATGAAGAAGACCATCGACATGCTGCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACGGCATGAAGTACTACCGGGACACAGACACCCCTGGCAGGTGTTTCATGAAGAAGACCATCGACATGCTGCA 1184
Query 480 GATCGAGTTCAAATGCTGCGGCAACAACGGTTTTCGGGACTGGTTTGAGATTCAGTGGATCAGCAATCGCTACC 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATCGAGTTCAAATGCTGCGGCAACAACGGTTTTCGGGACTGGTTTGAGATTCAGTGGATCAGCAATCGCTACC 1258
Query 554 TGGACTTTTCCTCCAAAGAAGTCAAAGA---------------------------------------------- 581
||||||||||||||||||||||||||||
Sbjct 1259 TGGACTTTTCCTCCAAAGAAGTCAAAGAGTTGCAGGATGAGCAGAGCTGCAGTGTCTTGGGGTGAGAGGTAGAA 1332
Query 582 -------------------------------------------------------------------------- 581
Sbjct 1333 CATGCGGGAGCTCAGACATTTTGGAACCAGGAACTACCAGCCAGGAAGGCCCAGCCTGGGGTCCCCAGTCTGAG 1406
Query 582 --------------------------------------------------------------TCGAATCAAGAG 593
||||||||||||
Sbjct 1407 GGAGAAGCTGGCACCAAGCTCTTGCTCTTCACCATTCTTCCCAGGGAACCCACAGACTACAGTCGAATCAAGAG 1480
Query 594 CAACGTGGATGGGCGGTACCTGGTGGACGGCGTCCCTTTCAGCTGCTGCAATCCTAGCTCGCCACGGCCCTGCA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CAACGTGGATGGGCGGTACCTGGTGGACGGCGTCCCTTTCAGCTGCTGCAATCCTAGCTCGCCACGGCCCTGCA 1554
Query 668 TCCAGTATCAGATCACCAACAACTCAGCACACTACAGTTACGACCACCAGACGGAGGAGCTCAACCTGTGGGTG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCCAGTATCAGATCACCAACAACTCAGCACACTACAGTTACGACCACCAGACGGAGGAGCTCAACCTGTGGGTG 1628
Query 742 CGTGGCTGCAGGGCTGCCCTGCTGAGCTACTACAGCAGCCTCATGAACTCCATGGGTGTCGTCACGCTCCTCAT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CGTGGCTGCAGGGCTGCCCTGCTGAGCTACTACAGCAGCCTCATGAACTCCATGGGTGTCGTCACGCTCCTCAT 1702
Query 816 TTGGCTCTTCGAGGTGACCATTACAATTGGGCTGCGCTACCTACAGACGTCGCTGGATGGTGTGTCCAACCCCG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTGGCTCTTCGAGGTGACCATTACAATTGGGCTGCGCTACCTACAGACGTCGCTGGATGGTGTGTCCAACCCCG 1776
Query 890 AGGAATCTGAGAGCGAGAGCGAGGGCTGGCTGCTGGAGAAGAGCGTGCCGGAGACCTGGAAGGCCTTTCTGGAG 963
||||||||||||||||||||.||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1777 AGGAATCTGAGAGCGAGAGCCAGGGCTGGCTGCTGGAGAGGAGCGTGCCGGAGACCTGGAAGGCCTTTCTGGAG 1850
Query 964 AGTGTGAAGAAGCTGGGCAAGGGCAACCAGGTGGAAGCCGAGGGCGCAGGCGCAGGCCAGGCCCCAGAGGCTGG 1037
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1851 AGTGTGAAGAAGCTGGGCAAGGGCAACCAGGTGGAAGCCGAGGGCGCAGACGCAGGCCAGGCCCCAGAGGCTGG 1924
Query 1038 C------------------------------------------------------------------------- 1038
|
Sbjct 1925 CTGAGGGCCCTGGGGCCCCTCCCCTCCCGAACACTGAGAAATAGTGCACTCCAAGAAACGTGGATCTCCCCCTC 1998
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 1999 ATCCAACTCCGAAAGTCTGAATCTCCCAAGGAGGGCACCATCTTACAGAGACTCTCCCTGACGGTGGAATTTAA 2072
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2073 GTTTAGGGTCCCTAAAAGCATTTGACACACAGTTGTTGAATGACTGACCCAAAATGTGAATGAAGCTAATGTGA 2146
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2147 ATGTGAGTGAAGCTCCCTTCAGGCCCGCTGCCCTAGGATATGCCCTCCTGGTGACTCGGGGGCTGTCTCAGACG 2220
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2221 ACTAGCCCAGGACCCATCTTTCTCACACGGATTTAGTCCCACCCTATGGCCACTGGCCGTATCTGAGGGCTGCT 2294
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2295 CCCCTTTTAGAATTTACCTCTTATGAGCTCCATGTTGCTTCACTCTATCCAAAGTGTCACTTGGTGCATAAGCA 2368
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2369 CAGAAATCTGAAAAATGGCCATGTTGTCTTTTTTTTTTTTTTTTAATGCCAAGATTGACAGGTTGGCCGTTTGC 2442
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2443 TTAATGCCAGAAGTTGGGGGAAAGTTACGCTTTTCTAAGAATAATGGACTCTTAAGGCATTGAGGGCTCTAAAC 2516
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2517 AGGATTCTTTAATCATGGAGCAAGAGAATTTCAAGGCAGGGGATTTTATCCCCCACCAAAAACACAGTGAAAGG 2590
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2591 CCTGCTTTTGTGTCCCATTCACATGCCCTCGGTCACTGAGTCTGGAGTGAACCACGGGTTGAGGAAGTCAGGCT 2664
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2665 GTTGGCGTGTCCCAGCACCACACCACCCCTAAAGTGCCAGGTGATCTCCTGTGGCTCATCGGTGGAAGCAGTGG 2738
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2739 GGTAGGCTGCTGCCCTGCTGTGGAAGAGGAGCAACAATCAGACATGAGTCCACCCTTTGGAGACCAGGCCTCAG 2812
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2813 CTCTTGGTGGGCCCAGGGACACCCACACAGGTGGCCATCACAGCCCCATGGACAACACTAATTGTCCACAGCAA 2886
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2887 AGGGCAAGGAATCCTCTGGGAGCTTCTTCCGTTTCTTCCCCCCAGATACCCATCTTGAAAAACACTATTTCTGG 2960
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 2961 AATGCTTCTGCATCAAAGGAGATTCTTTGAGATAGCCCATCTTCCTGAGCTAGCAAATACAGGAGTTTTCACTT 3034
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3035 TCTTTAGGAAAGAGAAGCTTTCAGGGGAAGGAGAGAATGATTTTGCTGACTTCCCAAGCCCTGGTGACCAGACC 3108
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3109 AAGGCAGGGCCCAGCATAATTCCTCCAGTTGGATGAACATTCAAGAGAGCTCGTTCCTACCTGGCTGGAGACCG 3182
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3183 AGGCCAGAAGGCAAAAACCAGAAAGGGAACAGTCCATAACTTACCTCTGCTTCTGACCGATGGTGTTTGGGAAT 3256
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3257 AGGTTACTTTGGACTGAGTTTGGGTTCTCTGCTGTCCTAAGAACTTCAGTGTAGAGAAAATAAGACTTCTGGTG 3330
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3331 CTGCTGGGGTATGTTCTGGGCTTAATTCCCCCAAGCAGAAGACCAGATCCAAGATGTTTGGACACCCTGTCAGA 3404
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3405 CGTTGGTCCCAAGTTTAATTAGATTTCTGAATCTCGTTGAGGCCAAGGAATGATCCATACTGAAAAAATGCTGA 3478
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3479 GCCAGCCATCTTTGGCAAAGGTCCCTGAGCTCTTGCTATCTCTCAAGAGTGCTGAGAACCACGGTGAAAGTGCT 3552
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3553 GCTCTAGGCCCACAAGTGTAACTATGCTGTTAACAGCTGTCAATAGATAATTAAAATTCATACTGTATGAAAAT 3626
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3627 CACTTTTGTTAAATGACTGTTTAAGCCCATTCAACAACATATATCAGAATCCCCTACTACCGCTAGTATTTGCC 3700
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3701 AAAAAAGAAAAGAAACCCACCCTAAGGGAAGCATTGGTAACAATCGTTGTTATAAACATGGCTTGGGTATCACA 3774
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3775 TCTCTCCATCTTGCCATCTCTTACCTGTAAGAACGGTGACTATTACAACAGTGACTATTATTATATCCAAATAA 3848
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3849 TCTCAGCATTTGCTGGAGTTTGAACCAGAGCTGAATACATGGAATTTTAATGTAGAAATTTAGGCAAAACTCCA 3922
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3923 AGCCATTTTTTCTTCTCCTCTGGCCAAAACGTTATTTCCTCAAACAGGGAAATATGAGTCTCTATGGGGCCAGG 3996
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 3997 TTATAGGAGCAAATGTGAACAACCTGAGAATCTGAAGGTTGTTGAGAGGACCAAGAGTGCATTGACTCTACAAT 4070
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4071 AAATCTCACTCATTGGTTCGGAGCAGGCTTAGGGTTAACTGCATTTTAACAGGTCTTCTCAGGTAGCCGGTAGT 4144
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4145 TGCGAGAGAAACCTGGACCATCCCTTTTGGTCACCTACCAGTGCCCAGGAAGTCTCTGCTATCAGGTTTTTGCT 4218
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4219 TGTGTGTAACTTCAGTCTTTCCTTGGGCTGGTGTAAATCCTTTTCTCCTGAGGGACCCAGCCTACTTTTTTTTT 4292
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4293 TTTTTTTTCAAATATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAA 4366
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4367 CCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTACTAGCTGGGATTACAGGCGTTTGCCACC 4440
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4441 ACGCCCGGCTAATTTTTGTATTTTTATTAGAGATGAGATTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 4514
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4515 TCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACCTGGCCCAGCTAGC 4588
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4589 TTTTAAAGTTCTGCCAGCATAGCCCCGGGATGGGGTGGGGGTAGACAGGGCCTTAGGACTTTCATTTTTAAAAT 4662
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4663 GCTCACTCCACGGTGAAGAAACAGGTGATGACTATCCTGAATATTTGGGAAGCTGTGTCCTAGAATTTTTGGCC 4736
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4737 TCAGTTCCAGAACCCACAGCTTCTTTACAACATGCTTCAAGCCTGGGACTGAGCTGCCAGTAAATAAACCCCTA 4810
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4811 GTAACCTTAATATGGGTTAATAAGATTAGGTGCCCGCTCTGCACGCTCCCCTGCCCCTCCTCGTCCGGGCACCT 4884
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4885 GTTACACTAGGCCAGCATGTTTGCAGCTTAGCCAGGGAAAATCGTGGACCAAGACAGGGCTTTTCATCCACGAC 4958
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 4959 TGGCTAAAAAGATGGCTCTCAATGACAGCGCAGGCAGGCAGCACCACTGTGTTAGGAAGAGAAAAGTGTCTGTC 5032
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5033 CAATACTATGAAAGTCCAGGGAAGAGACAAGTGCCTTCCCAGGTCACAATGGATAGATTGGCTGGAAGGGGAAA 5106
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5107 AACATGTCAGTTCTTAACTCCTGACAGCATTTTATCCTGTCCATCACAGAGGACTGTAAACAGCAAAGTTACAG 5180
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5181 ATTAGAGAATGCTGAGCTCTCAGGATGGCATCAAATGGAGGATTAAGATGTAAGGGACAACTTCTAGCTATTTA 5254
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5255 CCTGAGGGAAGTGAAAATTCAGGTTTGTACAAAAACCCATCCATGAATGTTTGTAGCAGTAATCACCAAAACAA 5328
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5329 TCACCCAAACTCACCCAAATGCCCTTCATCTGGCAACTGCCCAGAAGTCTGTACAACGGAATGCTACTCAGCAA 5402
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5403 TCCAAAGGAACAGGGAGGACCCGAATGCATTCTTCTTTAGTGAGAAGCCAGACTCAAAATGCTACATATGATAC 5476
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5477 AATTCCATTTATATAACATTCGGGAAGAGACAAAACAAAGGGAGAGAAAAACACTGGTAGCTGAAAGCCAGGAT 5550
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5551 GAGGCAAGAAGCTGACTACAAAGGGGACTTTTGGGGAAGATGGAATTGTTCTATTTCTCGATTGTGGTTGTTTA 5624
Query 1039 -------------------------------------------------------------------------- 1038
Sbjct 5625 ACTGTATGCATTTGTTAAAATGTATAAAACTGTACACTAAAAAGAGTTAATCTGTTTGTAAAATATACCTCAAT 5698
Query 1039 ---------------- 1038
Sbjct 5699 AAATGTGACTTAAAAA 5714
