Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06855
- Subject:
- NM_001260496.1
- Aligned Length:
- 1754
- Identities:
- 563
- Gaps:
- 1159
Alignment
Query 1 ATGCCGAAACCAATCAACGTAAGAGTAACTACAATGGATGCTGAGCTGGAATTTGCCATTCAGCCCAATACAAC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGAAACCAATCAACGTAAGAGTAACTACAATGGATGCTGAGCTGGAATTTGCCATTCAGCCCAATACAAC 74
Query 75 TGGCAAACAACTTTTTGACCAGGTGGTGAAAACAGTTGGTTTGCGTGAGGTCTGGTTTTTTGGGCTGCAGTATG 148
||||||||||||||||||||
Sbjct 75 TGGCAAACAACTTTTTGACC------------------------------------------------------ 94
Query 149 TAGACAGCAAAGGTTATTCTACATGGCTTAAACTAAATAAAAAGGTAACACAGCAGGATGTTAAAAAAGAGAAT 222
||||||||||||||||||||||||||||||||
Sbjct 95 ------------------------------------------AGGTAACACAGCAGGATGTTAAAAAAGAGAAT 126
Query 223 CCTTTACAGTTCAAGTTTAGAGCTAAATTCTTTCCTGAAGATGTTTCTGAGGAATTAATTCAAGAAATAACCCA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CCTTTACAGTTCAAGTTTAGAGCTAAATTCTTTCCTGAAGATGTTTCTGAGGAATTAATTCAAGAAATAACCCA 200
Query 297 GAGACTCTTCTTCTTGCAAGTTAAAGAAGCCATCTTAAATGATGAGATATATTGCCCGCCAGAAACTGCAGTTC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GAGACTCTTCTTCTTGCAAGTTAAAGAAGCCATCTTAAATGATGAGATATATTGCCCGCCAGAAACTGCAGTTC 274
Query 371 TTTTGGCTTCCTATGCTGTCCAAGCCAAGTATGGAGATTACAATAAAGAGATTCATAAGCCAGGCTACCTGGCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TTTTGGCTTCCTATGCTGTCCAAGCCAAGTATGGAGATTACAATAAAGAGATTCATAAGCCAGGCTACCTGGCT 348
Query 445 AATGATAGACTCCTACCCCAGCGTGTATTGGAACAACACAAACTAACAAAAGAACAGTGGGAAGAAAGAATACA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AATGATAGACTCCTACCCCAGCGTGTATTGGAACAACACAAACTAACAAAAGAACA------------------ 404
Query 519 GAACTGGCATGAAGAACATAGAGGAATGTTAAGGGAGGATTCTATGATGGAATACCTGAAGATTGCACAAGATC 592
|||.||| ||| ||||
Sbjct 405 -------------------AGATGAA---------------------------ACC--AAGA------------ 418
Query 593 TAGAAATGTATGGAGTCAACTATTTTGAAATAAAAAATAAAAAAGGAACTGAATTGTGGCTAGGTGTTGATGCT 666
|||.|.|||||.| ||| |.||.||||
Sbjct 419 ---------------------------AAACACAAAATGA--------------TGT-------TCTTCATGC- 443
Query 667 TTGGGTCTGAATATTTATGAGCATGAC--GACAAGTTAACACCTAAAATTGGTTTTCCCTG-GAGTGAAATCAG 737
|..||||.||.| ||||.|.| ||.|||| ||| |.| |.||| || |||
Sbjct 444 -----TGAGAATGTTAA--AGCAGGCCGTGATAAGT--ACA---AGA---------CTCTGCGA-------CAG 489
Query 738 AAATATTTCATTTAATGACAAAAAATTTGTTATAAAGCCAATCGACAAAAAGGCACCTGATTTTGTGTTTTATG 811
| ||| ||| |||.|||| ||||| |||
Sbjct 490 A-----TTC-------GAC---------------AAGGCAAT--ACAAA---GCA------------------- 512
Query 812 CACCTCGTCTGAGAATCAATAAGAGGATTTTG--GCCTTATGTATGGGAAACCATGAACTATACATGCGAAGAA 883
|.|.||| ||.||.|||| || .||| ||||.|.||| ||||.| ||||
Sbjct 513 ----------GCGTATC-----GATGAGTTTGAAGC--AATG--TGGGGACCCA--AACTGT--ATGC------ 557
Query 884 GGAAGCCTGATACTATTGAAGTACAACAGATGAAGGCTCAGGCTAGGGAGGAGAAACATCAGAAGCAGTTGGAA 957
||| ||.| |||||| .||||..||.| |||||
Sbjct 558 --------------ATT---GTTC--CAGATG--CGCTCTTGCCA-----------------AAGCA------- 586
Query 958 AGGGCACAATTAGAGAATGAAAAGGAGAAAAGAGAAATAGCAGAAAAGGAAAAGGAAAGAATAGAACGTGAAAA 1031
|||.|| ||..||||
Sbjct 587 ---GCATAA--AGCAAATG------------------------------------------------------- 600
Query 1032 GGAAGAGCTAATGGAACGTCTAAAACAAATTGAAGAGCAGACAATTAAAGCTCAGAAAGAACTAGAAGAACAGA 1105
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1106 CTCGAAAAGCTCTAGAACTGGATCAAGAACGAAAACGAGCAAAAGAAGAAGCAGAACGACTTGAAAAGGAGCGT 1179
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1180 CGAGCTGCTGAAGAGGCAAAGTCTGCCATAGCAAAACAAGCTGCCGACCAGATGAAGAATCAGGAGCAGCTAGC 1253
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1254 AGCAGAACTTGCTGAATTCACTGCCAAGATTGCACTTCTAGAGGAAGCCAAGAAGAAAAAGGAAGAGGAAGCTA 1327
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1328 CTGAGTGGCAACACAAAGCTTTTGCAGCCCAGGAAGACTTGGAAAAGACCAAAGAAGAGTTAAAAACTGTGATG 1401
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1402 TCTGCCCCCCCTCCACCTCCACCACCACCAGTCATTCCTCCAACAGAAAACGAACATGATGAACACGATGAGAA 1475
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1476 TAATGCTGAAGCTAGTGCTGAATTATCAAATGAAGGGGTAATGAACCATAGAAGCGAGGAAGAACGTGTAACCG 1549
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1550 AAACACAGAAAAATGAGCGTGTTAAGAAGCAACTTCAGGCATTAAGTTCAGAATTAGCCCAAGCCAGAGATGAA 1623
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1624 ACCAAGAAAACACAAAATGATGTTCTTCATGCTGAGAATGTTAAAGCAGGCCGTGATAAGTACAAGACTCTGCG 1697
Sbjct 601 -------------------------------------------------------------------------- 600
Query 1698 ACAGATTCGACAAGGCAATACAAAGCAGCGTATCGATGAGTTTGAAGCAATG 1749
Sbjct 601 ---------------------------------------------------- 600
