Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06943
- Subject:
- XR_001752588.1
- Aligned Length:
- 3178
- Identities:
- 1361
- Gaps:
- 1717
Alignment
Query 1 --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 55 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 129 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 203 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 277 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 351 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 425 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 499 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 573 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 647 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 721 ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 794
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 795 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 869 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 943 CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT----------- 973
|||||| ||| || || |||||| ||||.|| ||||
Sbjct 963 CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC 1035
Query 974 --------------------------------------------GGTTCTCGATCCCGTAC------------- 990
.|.|.||.||||.||.|
Sbjct 1036 AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC 1109
Query 991 --CCCAGCT--ACG-CCA---------------TCTTT-------GGCTCGAAGACCA-----TCCACCTCACT 1032
.|||||| ||| ||| ||||| ||...||||| | ||.|..||||.
Sbjct 1110 TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGA--AGTGAGTCAAGATCACA 1181
Query 1033 GGCC-----GG-----------------TCCCTCCTG------------------------------------- 1047
|||| || .|||..|||
Sbjct 1182 GGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCC 1255
Query 1048 -CCGGCGC-TGGA--------GGCCGA------------GCCCCT-CTGGGCCACCGTCT-TTGGCAGCCAGAG 1097
|.|.|.| |||| |||.|| ||.||| ||||| || ||||.|.||||||
Sbjct 1256 ACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGG-------CTGTTGGGACCCAGAG 1322
Query 1098 --CCACCACGAGGTCACC----------------------------ATGTCCTACCCC----ATGCGCTCCGTG 1137
|..|.||.|||||||| ||.||.|.|||| .|||..||| ||
Sbjct 1323 GTCGGCGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCC-TG 1395
Query 1138 CAGCACCGGCACTTCC-------GC-CTCGTGCACA-----------ACCTCAACTT---CAAGATGCCCTTTC 1189
.| ||| ||||| || |.|.|||.|| ||||||.||| ||.||.|..||
Sbjct 1396 AA--ACC----CTTCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCACCTTTTCCATGAGGGACT--- 1460
Query 1190 CCA------------TCGACCA------------GGACTTCTACGTCTCACCCACCT----------------- 1222
||| ||..||| |||| || |||.|||.|||
Sbjct 1461 CCACAGCATGGCGGGTCACCCAGCAGCGGCCCCCGGAC----AC--CTCTCCCTCCTGGATGATGTCCCCTCTC 1528
Query 1223 ----TCCAGG--------ACCTCCTG----AACCGCACTACAGCT----------------------------- 1251
|||||| .||||||| ||...|.||||||.|
Sbjct 1529 TGGCTCCAGGCCTCATACTCCTCCTGGCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGACCAGC 1602
Query 1252 --------GGTCAG-------CCCACGGGCTGGTACAAGGACCT----CCGTCATTACTACTACCGGGC--GCG 1304
||||.| |||| |||||.|....||| ||||.| |||..|| ||.
Sbjct 1603 TGTGTGGGGGTCTGGGGGAGTCCCA-----TGGTAAACACCCCTGTCCCCGTGA--------ACCCTGCCAGCA 1663
Query 1305 CTGGG---AGCTCTAC-------------------GACCGGAGCCGGGACCCCC-------------------- 1336
||||| ||||||.| .|||.||.||.|.||.|||
Sbjct 1664 CTGGGAGAAGCTCTTCTTAGGATGTCCACTTTACAAACCTGACCCTGCACACCCCGCTCTGTGCCCTGCACCTC 1737
Query 1337 --------ACGA----GACCCAGAA------CCTGGC----------CACCGACCCGCGCTT------------ 1370
||.| |||.|||.| ||||.| ||||||.||.|.|||
Sbjct 1738 CATCCTGAACTATCTGGACACAGCAGTGCCTCCTGCCACCCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCC 1811
Query 1371 --TG-----------------------CTCAGCTT---------------CTG--------------------- 1383
|| ||||.||| |||
Sbjct 1812 AGTGGGGTCCAGGCCCCTCCCTGGAGCCTCACCTTGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAG 1885
Query 1384 ------GAGATGCTTC-----------GGGACCAG--------CTGGCCAAG--------TGGCAG-------- 1416
|||.||||.| |.|||||| |||.||.|| ||.|||
Sbjct 1886 GGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCAGCAGAGGCCCTGACCCAGCTGCCTCCTGCCAGACAGGCAG 1959
Query 1417 -------------------TG-GGAGACCCACGACC----CCTGGGT-GTGCGCCCCC--GACGGCGT------ 1457
|| |.||.||||||.|| ||.|||| ||| .||.|| |||.||.|
Sbjct 1960 CAGAAGCCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTG-TCCTCCAGGACTGCCTTGAACA 2032
Query 1458 ------------------------CCTGGAG--------GAGAAG------CTCTCTCCCCAGTG--------- 1484
||| ||| |||||| ||||.|||||.|.|
Sbjct 2033 AGGGCTCTGAGGCTTCGTAATCAACCT-GAGGGCAAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAAT 2105
Query 1485 CCAGCCCCTC------CACAATGAGCTG---------------------------------------------- 1506
||||| | ||.||.|.||||
Sbjct 2106 CCAGC----CAGAAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTG 2175
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2176 CCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGC 2249
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2250 TACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCA 2323
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2324 CTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCAAGAGCATTCTAGAT 2397
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2398 AGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGGATGCTGAGTGGCAT 2471
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2472 CCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGG 2545
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2546 GCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATTTTTACAATAAAAAT 2619
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2620 TAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCTCCCTGAACATCGTC 2693
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2694 AAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGG 2767
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2768 GCCACATACTGGTACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGA 2841
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2842 GCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCG 2915
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2916 TGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATGATCTGTTACCGTCT 2989
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2990 CCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGT 3063
Query 1507 ---------------------------------------------------------------------- 1506
Sbjct 3064 TCAGTGTATGATTCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACAATCAATGTAA 3133
