Nucleotide Global Alignment

Description

Query:
ccsbBroad304_06943
Subject:
XR_001752588.1
Aligned Length:
3178
Identities:
1361
Gaps:
1717

Alignment

Query    1  --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC  54
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC  74

Query   55  CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG  148

Query  129  CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA  222

Query  203  GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC  296

Query  277  CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG  370

Query  351  CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA  444

Query  425  ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG  518

Query  499  GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG  592

Query  573  AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG  666

Query  647  ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC  740

Query  721  ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA  794
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA  814

Query  795  CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA  888

Query  869  CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC  962

Query  943  CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT-----------  973
            ||||||  |||    || ||    ||||||               ||||.||       ||||           
Sbjct  963  CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC  1035

Query  974  --------------------------------------------GGTTCTCGATCCCGTAC-------------  990
                                                        .|.|.||.||||.||.|             
Sbjct 1036  AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC  1109

Query  991  --CCCAGCT--ACG-CCA---------------TCTTT-------GGCTCGAAGACCA-----TCCACCTCACT  1032
              .||||||  ||| |||               |||||       ||...|||||  |     ||.|..||||.
Sbjct 1110  TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGA--AGTGAGTCAAGATCACA  1181

Query 1033  GGCC-----GG-----------------TCCCTCCTG-------------------------------------  1047
            ||||     ||                 .|||..|||                                     
Sbjct 1182  GGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCC  1255

Query 1048  -CCGGCGC-TGGA--------GGCCGA------------GCCCCT-CTGGGCCACCGTCT-TTGGCAGCCAGAG  1097
             |.|.|.| ||||        |||.||            ||.||| |||||       || ||||.|.||||||
Sbjct 1256  ACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGG-------CTGTTGGGACCCAGAG  1322

Query 1098  --CCACCACGAGGTCACC----------------------------ATGTCCTACCCC----ATGCGCTCCGTG  1137
              |..|.||.||||||||                            ||.||.|.||||    .|||..||| ||
Sbjct 1323  GTCGGCGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCC-TG  1395

Query 1138  CAGCACCGGCACTTCC-------GC-CTCGTGCACA-----------ACCTCAACTT---CAAGATGCCCTTTC  1189
            .|  |||    |||||       || |.|.|||.||           ||||||.|||   ||.||.|..||   
Sbjct 1396  AA--ACC----CTTCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCACCTTTTCCATGAGGGACT---  1460

Query 1190  CCA------------TCGACCA------------GGACTTCTACGTCTCACCCACCT-----------------  1222
            |||            ||..|||            ||||    ||  |||.|||.|||                 
Sbjct 1461  CCACAGCATGGCGGGTCACCCAGCAGCGGCCCCCGGAC----AC--CTCTCCCTCCTGGATGATGTCCCCTCTC  1528

Query 1223  ----TCCAGG--------ACCTCCTG----AACCGCACTACAGCT-----------------------------  1251
                ||||||        .|||||||    ||...|.||||||.|                             
Sbjct 1529  TGGCTCCAGGCCTCATACTCCTCCTGGCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGACCAGC  1602

Query 1252  --------GGTCAG-------CCCACGGGCTGGTACAAGGACCT----CCGTCATTACTACTACCGGGC--GCG  1304
                    ||||.|       ||||     |||||.|....|||    ||||.|        |||..||  ||.
Sbjct 1603  TGTGTGGGGGTCTGGGGGAGTCCCA-----TGGTAAACACCCCTGTCCCCGTGA--------ACCCTGCCAGCA  1663

Query 1305  CTGGG---AGCTCTAC-------------------GACCGGAGCCGGGACCCCC--------------------  1336
            |||||   ||||||.|                   .|||.||.||.|.||.|||                    
Sbjct 1664  CTGGGAGAAGCTCTTCTTAGGATGTCCACTTTACAAACCTGACCCTGCACACCCCGCTCTGTGCCCTGCACCTC  1737

Query 1337  --------ACGA----GACCCAGAA------CCTGGC----------CACCGACCCGCGCTT------------  1370
                    ||.|    |||.|||.|      ||||.|          ||||||.||.|.|||            
Sbjct 1738  CATCCTGAACTATCTGGACACAGCAGTGCCTCCTGCCACCCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCC  1811

Query 1371  --TG-----------------------CTCAGCTT---------------CTG---------------------  1383
              ||                       ||||.|||               |||                     
Sbjct 1812  AGTGGGGTCCAGGCCCCTCCCTGGAGCCTCACCTTGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAG  1885

Query 1384  ------GAGATGCTTC-----------GGGACCAG--------CTGGCCAAG--------TGGCAG--------  1416
                  |||.||||.|           |.||||||        |||.||.||        ||.|||        
Sbjct 1886  GGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCAGCAGAGGCCCTGACCCAGCTGCCTCCTGCCAGACAGGCAG  1959

Query 1417  -------------------TG-GGAGACCCACGACC----CCTGGGT-GTGCGCCCCC--GACGGCGT------  1457
                               || |.||.||||||.||    ||.|||| ||| .||.||  |||.||.|      
Sbjct 1960  CAGAAGCCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTG-TCCTCCAGGACTGCCTTGAACA  2032

Query 1458  ------------------------CCTGGAG--------GAGAAG------CTCTCTCCCCAGTG---------  1484
                                    ||| |||        ||||||      ||||.|||||.|.|         
Sbjct 2033  AGGGCTCTGAGGCTTCGTAATCAACCT-GAGGGCAAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAAT  2105

Query 1485  CCAGCCCCTC------CACAATGAGCTG----------------------------------------------  1506
            |||||    |      ||.||.|.||||                                              
Sbjct 2106  CCAGC----CAGAAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTG  2175

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2176  CCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGC  2249

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2250  TACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCA  2323

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2324  CTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCAAGAGCATTCTAGAT  2397

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2398  AGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGGATGCTGAGTGGCAT  2471

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2472  CCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGG  2545

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2546  GCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATTTTTACAATAAAAAT  2619

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2620  TAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCTCCCTGAACATCGTC  2693

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2694  AAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGG  2767

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2768  GCCACATACTGGTACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGA  2841

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2842  GCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCG  2915

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2916  TGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATGATCTGTTACCGTCT  2989

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2990  CCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGT  3063

Query 1507  ----------------------------------------------------------------------  1506
                                                                                  
Sbjct 3064  TCAGTGTATGATTCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACAATCAATGTAA  3133

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