Nucleotide Global Alignment

Description

Query:
ccsbBroad304_06943
Subject:
XR_001752590.1
Aligned Length:
3314
Identities:
1351
Gaps:
1879

Alignment

Query    1  --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC  54
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC  74

Query   55  CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG  148

Query  129  CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA  222

Query  203  GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC  296

Query  277  CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG  370

Query  351  CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA  444

Query  425  ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG  518

Query  499  GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG  592

Query  573  AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG  666

Query  647  ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC  740

Query  721  ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA  794
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA  814

Query  795  CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA  888

Query  869  CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC  962

Query  943  CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT-----------  973
            ||||||  |||    || ||    ||||||               ||||.||       ||||           
Sbjct  963  CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC  1035

Query  974  --------------------------------------------GGTTCTCGATCCCGTAC-------------  990
                                                        .|.|.||.||||.||.|             
Sbjct 1036  AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC  1109

Query  991  --CCCAGCT--ACG-CCA---------------TCTTT-------GGCTCGAAGACCA-----TCCACCTCACT  1032
              .||||||  ||| |||               |||||       ||...|||||  |     ||.|..||||.
Sbjct 1110  TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGA--AGTGAGTCAAGATCACA  1181

Query 1033  GGCC-----GG-----------------TCCCTCCTG-------------------------------------  1047
            ||||     ||                 .|||..|||                                     
Sbjct 1182  GGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCC  1255

Query 1048  -CCGGCGC-TGGA--------GGCCGA------------GCCCCT-CTGGGCCACCGTCT-TTGGCAGCCAGAG  1097
             |.|.|.| ||||        |||.||            ||.||| |||||       || ||||.|.||||||
Sbjct 1256  ACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGG-------CTGTTGGGACCCAGAG  1322

Query 1098  --CCACCACGAGGTCACC----------------------------ATGTCCTACCCC----ATGCGCTCCGTG  1137
              |..|.||.||||||||                            ||.||.|.||||    .|||..||| ||
Sbjct 1323  GTCGGCGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCC-TG  1395

Query 1138  CAGCACCGGCACTTCC-------GC-CTCGTGCACA-----------ACCTCAACTTCAAGATGCCCTTTCCCA  1192
            .|  |||    |||||       || |.|.|||.||           ||||||            |||||.|||
Sbjct 1396  AA--ACC----CTTCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCA------------CCTTTTCCA  1451

Query 1193  TCGACCAGGACTTCTA--------CGTCTCACCCA-------CCTTCCAGGA--------CCTCCTGAA-----  1238
            | ||  .|||| ||.|        ||..|||||||       ||  ||.|||        |||||||.|     
Sbjct 1452  T-GA--GGGAC-TCCACAGCATGGCGGGTCACCCAGCAGCGGCC--CCCGGACACCTCTCCCTCCTGGATGATG  1519

Query 1239  -CCGCACTACAGCTGGTCAGC-CCACGGGCTGGTACAAGGACCTCC-GTC---ATTACTACTAC----------  1296
             ||.|.||    |||    || ||| ||.||..|||    .||||| |.|   |.|||| ||||          
Sbjct 1520  TCCCCTCT----CTG----GCTCCA-GGCCTCATAC----TCCTCCTGGCTCAAGTACT-CTACAGGTGACATT  1579

Query 1297  ---CGGGCGC------------GCTG---GGAGCTCTACGACCGGAG-----------------------CCGG  1329
               |||| ||            ||||   ||.|.|||..|   ||||                       |||.
Sbjct 1580  GGACGGG-GCCATCATAGACCAGCTGTGTGGGGGTCTGGG---GGAGTCCCATGGTAAACACCCCTGTCCCCGT  1649

Query 1330  GACCCC------CAC---GAGA-----------------CC------CAGAACCTGGC------CACCGACCCG  1365
            ||.|||      |||   ||||                 ||      || ||||||.|      |||   ||||
Sbjct 1650  GAACCCTGCCAGCACTGGGAGAAGCTCTTCTTAGGATGTCCACTTTACA-AACCTGACCCTGCACAC---CCCG  1719

Query 1366  CGCTTTGCTCAGC----------------TTCTGGAGA------TGCTTCGGGACCAGCTGGCCAAGTGGCAGT  1417
            |.||.|||.|.||                .||||||.|      |||.||..| |||.|..||||    |||  
Sbjct 1720  CTCTGTGCCCTGCACCTCCATCCTGAACTATCTGGACACAGCAGTGCCTCCTG-CCACCCTGCCA----GCA--  1786

Query 1418  GGGAGACCC--------ACGACCCC--TGGGTGTGC--GCCCC-------------------CG----ACGG--  1454
            ..|||.|||        .|.|||||  |||| ||.|  |||||                   ||    ||||  
Sbjct 1787  CCGAGCCCCTCTTCCAGCCCACCCCAGTGGG-GTCCAGGCCCCTCCCTGGAGCCTCACCTTGCGGGTCACGGTG  1859

Query 1455  -------------CGTCCTGGAGGAG------AAGCT-CT-CT---CCC--CAGTG-CCAGC-----CCCT---  1493
                         .||||||||.|||      .|||| || ||   |||  |||.| |||||     ||||   
Sbjct 1860  CACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCAGCAGAGGCCCTGAC  1933

Query 1494  CCACAATGAGCTG-------------------------------------------------------------  1506
            ||      |||||                                                             
Sbjct 1934  CC------AGCTGCCTCCTGCCAGGAGGAGGAAGCCGAGGCAGGCTGGGTGCCATTTCCCTGTGGGCCTCTCTG  2001

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2002  GGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGGTGCCGTGCGCGGCAGCAGCAGAAG  2075

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2076  CCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTGTCCTCCAGGACTGCCTTGAACAAGGGCTC  2149

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2150  TGAGGCTTCGTAATCAACCTGAGGGCAAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAATCCAGCCAG  2223

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2224  AAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTGCCTGCACGCCTT  2297

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2298  GGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGCTACACATAGTGC  2371

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2372  TGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCACTTTCCTGTCTT  2445

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2446  GAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCAAGAGCATTCTAGATAGAGGTTTCTTA  2519

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2520  GCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGGATGCTGAGTGGCATCCCTGGCCTTCA  2593

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2594  CCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGGGCTTCCACCATC  2667

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2668  CACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATTTTTACAATAAAAATTAAGATGTGTTT  2741

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2742  TAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCTCCCTGAACATCGTCAAGGGGCTCTGT  2815

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2816  TGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGGGCCACATACTGG  2889

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2890  TACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGAGCATTACGGCCT  2963

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 2964  CAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCGTGAACTGTGCAA  3037

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 3038  GTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATGATCTGTTACCGTCTCCCATCACCCCC  3111

Query 1507  --------------------------------------------------------------------------  1506
                                                                                      
Sbjct 3112  AGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGTTCAGTGTATGAT  3185

Query 1507  ----------------------------------------------------------  1506
                                                                      
Sbjct 3186  TCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACAATCAATGTAA  3243

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