Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06943
- Subject:
- XR_001752590.1
- Aligned Length:
- 3314
- Identities:
- 1351
- Gaps:
- 1879
Alignment
Query 1 --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 55 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 129 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 203 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 277 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 351 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 425 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 499 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 573 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 647 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 721 ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 794
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 795 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 869 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 943 CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT----------- 973
|||||| ||| || || |||||| ||||.|| ||||
Sbjct 963 CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC 1035
Query 974 --------------------------------------------GGTTCTCGATCCCGTAC------------- 990
.|.|.||.||||.||.|
Sbjct 1036 AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC 1109
Query 991 --CCCAGCT--ACG-CCA---------------TCTTT-------GGCTCGAAGACCA-----TCCACCTCACT 1032
.|||||| ||| ||| ||||| ||...||||| | ||.|..||||.
Sbjct 1110 TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGA--AGTGAGTCAAGATCACA 1181
Query 1033 GGCC-----GG-----------------TCCCTCCTG------------------------------------- 1047
|||| || .|||..|||
Sbjct 1182 GGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCC 1255
Query 1048 -CCGGCGC-TGGA--------GGCCGA------------GCCCCT-CTGGGCCACCGTCT-TTGGCAGCCAGAG 1097
|.|.|.| |||| |||.|| ||.||| ||||| || ||||.|.||||||
Sbjct 1256 ACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGG-------CTGTTGGGACCCAGAG 1322
Query 1098 --CCACCACGAGGTCACC----------------------------ATGTCCTACCCC----ATGCGCTCCGTG 1137
|..|.||.|||||||| ||.||.|.|||| .|||..||| ||
Sbjct 1323 GTCGGCGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCC-TG 1395
Query 1138 CAGCACCGGCACTTCC-------GC-CTCGTGCACA-----------ACCTCAACTTCAAGATGCCCTTTCCCA 1192
.| ||| ||||| || |.|.|||.|| |||||| |||||.|||
Sbjct 1396 AA--ACC----CTTCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCA------------CCTTTTCCA 1451
Query 1193 TCGACCAGGACTTCTA--------CGTCTCACCCA-------CCTTCCAGGA--------CCTCCTGAA----- 1238
| || .|||| ||.| ||..||||||| || ||.||| |||||||.|
Sbjct 1452 T-GA--GGGAC-TCCACAGCATGGCGGGTCACCCAGCAGCGGCC--CCCGGACACCTCTCCCTCCTGGATGATG 1519
Query 1239 -CCGCACTACAGCTGGTCAGC-CCACGGGCTGGTACAAGGACCTCC-GTC---ATTACTACTAC---------- 1296
||.|.|| ||| || ||| ||.||..||| .||||| |.| |.|||| ||||
Sbjct 1520 TCCCCTCT----CTG----GCTCCA-GGCCTCATAC----TCCTCCTGGCTCAAGTACT-CTACAGGTGACATT 1579
Query 1297 ---CGGGCGC------------GCTG---GGAGCTCTACGACCGGAG-----------------------CCGG 1329
|||| || |||| ||.|.|||..| |||| |||.
Sbjct 1580 GGACGGG-GCCATCATAGACCAGCTGTGTGGGGGTCTGGG---GGAGTCCCATGGTAAACACCCCTGTCCCCGT 1649
Query 1330 GACCCC------CAC---GAGA-----------------CC------CAGAACCTGGC------CACCGACCCG 1365
||.||| ||| |||| || || ||||||.| ||| ||||
Sbjct 1650 GAACCCTGCCAGCACTGGGAGAAGCTCTTCTTAGGATGTCCACTTTACA-AACCTGACCCTGCACAC---CCCG 1719
Query 1366 CGCTTTGCTCAGC----------------TTCTGGAGA------TGCTTCGGGACCAGCTGGCCAAGTGGCAGT 1417
|.||.|||.|.|| .||||||.| |||.||..| |||.|..|||| |||
Sbjct 1720 CTCTGTGCCCTGCACCTCCATCCTGAACTATCTGGACACAGCAGTGCCTCCTG-CCACCCTGCCA----GCA-- 1786
Query 1418 GGGAGACCC--------ACGACCCC--TGGGTGTGC--GCCCC-------------------CG----ACGG-- 1454
..|||.||| .|.||||| |||| ||.| ||||| || ||||
Sbjct 1787 CCGAGCCCCTCTTCCAGCCCACCCCAGTGGG-GTCCAGGCCCCTCCCTGGAGCCTCACCTTGCGGGTCACGGTG 1859
Query 1455 -------------CGTCCTGGAGGAG------AAGCT-CT-CT---CCC--CAGTG-CCAGC-----CCCT--- 1493
.||||||||.||| .|||| || || ||| |||.| ||||| ||||
Sbjct 1860 CACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGCAGAGACCAGCAGAGGCCCTGAC 1933
Query 1494 CCACAATGAGCTG------------------------------------------------------------- 1506
|| |||||
Sbjct 1934 CC------AGCTGCCTCCTGCCAGGAGGAGGAAGCCGAGGCAGGCTGGGTGCCATTTCCCTGTGGGCCTCTCTG 2001
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2002 GGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGGTGCCGTGCGCGGCAGCAGCAGAAG 2075
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2076 CCGTCCACCCTCCTGAGAAGCCCCACGGCCTCCTCCAGGGTCGTGTCCTCCAGGACTGCCTTGAACAAGGGCTC 2149
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2150 TGAGGCTTCGTAATCAACCTGAGGGCAAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAATCCAGCCAG 2223
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2224 AAGACAGAAGGCGCTGAGGGCACTGAGGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTGCCTGCACGCCTT 2297
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2298 GGTCAAAACAAAGCCACACACCAGAGCCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGCTACACATAGTGC 2371
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2372 TGGCCAGAGAGTCAACTGCCAACCCTTCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCACTTTCCTGTCTT 2445
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2446 GAAAAAGAAAAGAAAAGAAAAGAAAGAACCTCGGTTCTAGAACATTCAAGAGCATTCTAGATAGAGGTTTCTTA 2519
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2520 GCCTTGGGATCATTCTGTGCTGCTGCGGGCTATACCGGGCCCTACAGGATGCTGAGTGGCATCCCTGGCCTTCA 2593
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2594 CCTACCCGATGCCCTGGCTCTCCACCCACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGGGCTTCCACCATC 2667
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2668 CACTTCATTTCTTCTCAATATTGTTCTAAGCTTAGGAGAGTAGATATTTTTACAATAAAAATTAAGATGTGTTT 2741
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2742 TAACACCATTAGAATCTAATTGGCCCCCTTAGGATATCGGGACTATCTCCCTGAACATCGTCAAGGGGCTCTGT 2815
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2816 TGCTTGAACTACCTCAGAGCTGATAATTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGGGCCACATACTGG 2889
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2890 TACTGGTCCATGGTCCATCAGGACCCGGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGAGCATTACGGCCT 2963
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2964 CAGCTCCACCTCCTGTCAGCTCAGCACAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCGTGAACTGTGCAA 3037
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3038 GTGAGGGATCTAGGTTTCACGCTCCTTATGAGAATCTAATTCCTGATGATCTGTTACCGTCTCCCATCACCCCC 3111
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3112 AGATGGGACCGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGTTCAGTGTATGAT 3185
Query 1507 ---------------------------------------------------------- 1506
Sbjct 3186 TCTTTCATTACATATTACAGTGTAATAATAATAGAAATAAAGTGTACAATCAATGTAA 3243
