Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07005
Subject:
XM_011520329.1
Aligned Length:
3413
Identities:
2128
Gaps:
1264

Alignment

Query    1  ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  AAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  CCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  ATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGCCG  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCTTGGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCGGAGTGGCTGGTGTTGCGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  GGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAGCCCGGGACCCCTGGAAATAGCCCTAGC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  TCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTTGA  1184
                                                                                  .|||
Sbjct    1  ----------------------------------------------------------------------ATGA  4

Query 1185  ATACGAGGCTGACAAGAACCCCAAGAGTAAGCCCAGTAATGGTCTACCTCCTTCACCCAC--ACCTGCTGCTCC  1256
            ..|.||  |||.|||      ||||   ||..||||              |.||||||||  |.|||.||    
Sbjct    5  CCATGA--CTGCCAA------CAAG---AATTCCAG--------------CATCACCCACGGAGCTGGTG----  49

Query 1257  ACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGCAAGT  1330
                     ||.||..|.|||              |.|||.|                              |.
Sbjct   50  ---------GCACTAAAGCCC--------------CTCGGGG------------------------------GA  70

Query 1331  CCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAG  1404
            |.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   71  CTCTGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAG  144

Query 1405  AATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGGG  1478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  AATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGGG  218

Query 1479  AGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCAAC  1552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  AGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCAAC  292

Query 1553  TGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCACA  1626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  TGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCACA  366

Query 1627  CAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGCTGCC  1700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  CAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGCTGCC  440

Query 1701  ACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCCTCCA  1774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  441  ACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCCTCCA  514

Query 1775  GCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAAGCTT  1848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  GCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAAGCTT  588

Query 1849  GTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCAGCAT  1922
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  589  GTCCAAAGAATTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCAGCAT  662

Query 1923  TGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCACACAC  1996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663  TGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCACACAC  736

Query 1997  AGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGGAG  2070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  737  AGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGGAG  810

Query 2071  TGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTACCT  2144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  811  TGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTACCT  884

Query 2145  CCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGGCTCA  2218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  885  CCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGGCTCA  958

Query 2219  AAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGACCTTT  2292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  959  AAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGACCTTT  1032

Query 2293  TCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAAGG  2366
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033  TCTTTCATGCTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAAGG  1106

Query 2367  GCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATG  2440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107  GCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATG  1180

Query 2441  AGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTC  2514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181  AGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTC  1254

Query 2515  CCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCG  2588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255  CCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCG  1328

Query 2589  GCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCC  2662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329  GCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCC  1402

Query 2663  GAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGC  2736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403  GAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGC  1476

Query 2737  TCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCAT  2810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477  TCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCAT  1550

Query 2811  GATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGC  2884
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551  GATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGC  1624

Query 2885  TGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACG  2958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  TGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACG  1698

Query 2959  TTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTC  3032
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699  TTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTC  1772

Query 3033  TGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGG  3106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773  TGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGG  1846

Query 3107  AGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTC  3180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847  AGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTC  1920

Query 3181  CGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTT  3254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921  CGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTT  1994

Query 3255  CATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAG  3328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995  CATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAG  2068

Query 3329  AACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCAC  3402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069  AACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCAC  2142

Query 3403  AAGAAGAAT  3411
            |||||||||
Sbjct 2143  AAGAAGAAT  2151

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