Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07166
- Subject:
- NM_001166038.2
- Aligned Length:
- 1246
- Identities:
- 746
- Gaps:
- 380
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGATAGGCATGTTGGAAAGTCTTCAGCATGAATCAGATCTCCTTCAGCATGATCAAATTCATACTGGAGAGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACCTTATGAATGTAATGAATGTAGAAAAACTTTTAGCCTGAAGCAAAACCTTGTAGAGCATAAGAAAATGCATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGAGAGAAATCTCATGAATGCACTGAATGTGGTAAAGTGTGCTCTCGAGTCTCATCTCTTACTCTACACCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAAGTCACACAGGAAAGAAGGCATATAAATGTAATAAATGTGGAAAAGCCTTCAGCCAGAAGGAAAACTTCCT 296
Query 1 -------------------------------------------------------------ATGTCACACC--- 10
|||.|| |||
Sbjct 297 TTCTCATCAGAAACATCACACTGGAGAGAAACCTTATGAATGTGAAAAAGTTTCTATTCAGATGCCA-ACCATC 369
Query 11 -TCAGCCAGCAGAAAATT--TACAGTGGGGAA--AACCCCTTTGCCTGTAAGGTATGTGGAAAAGTCTTCAGCC 79
||||.||.|||||||.| |||| |||| ||.||||.|||.|||||||.||||||.||||.|||.|.|.
Sbjct 370 ATCAGACACCAGAAAAATCATACA----GGAACCAAACCCTATGCATGTAAGGAATGTGGCAAAGCCTTTAACG 439
Query 80 ACAAATCAAACCTCACTGAGCATGAGCATTTTCACACGAGAGAGAAACCTTTTGAATGTAACGAGTGTGGAAAA 153
.||||.||.|.|||||||||||||||.|..||||.||..||||.|||||.|||||||||||..|||||||||.|
Sbjct 440 GCAAAGCATATCTCACTGAGCATGAGAAAATTCATACTGGAGAAAAACCATTTGAATGTAATCAGTGTGGAAGA 513
Query 154 GCCTTTAGCCAAAAGCAGTATGTCATTAAACATCAGAACACCCATACTGGCGAGAAGCTTTTCGAATGTAATGA 227
|||||.|||||.|||||.||..||||||||||||||||||.|||||||||..||||||..||..||||||.|||
Sbjct 514 GCCTTCAGCCAGAAGCAATACCTCATTAAACATCAGAACATCCATACTGGAAAGAAGCCCTTTAAATGTAGTGA 587
Query 228 ATGTGGAAAATCATTTAGCCAGAAGGAAAACCTCCTTACGCACCAGAAAATTCACACTGGAGAAAAACCTTTTG 301
.|||||||||.|.|||||||||||||||||||||.|||..||.||||.|||.||.||||||||.|||||||.||
Sbjct 588 GTGTGGAAAAGCTTTTAGCCAGAAGGAAAACCTCATTATACATCAGAGAATCCATACTGGAGAGAAACCTTATG 661
Query 302 AGTGTAAAGATTGCGGGAAAGCTTTCATTCAGAAGTCAAACCTCATCAGACACCAGAGAACTCACACAGGAGAG 375
|.|||||||..||.|||||||||||||||||||||||||.||||||.|||||||||||||.|||||||||||||
Sbjct 662 AATGTAAAGGGTGTGGGAAAGCTTTCATTCAGAAGTCAAGCCTCATTAGACACCAGAGAAGTCACACAGGAGAG 735
Query 376 AAGCCCTTTGTA--TGTAAGGAGTGTGGAAAAACCTTCAGTGGCAAATCCAACCTTACTGAGCATGAGAAAATC 447
||.|| ||.|| ||||||||.|||||.|||.|||||||||||||.||.||.||.||.||||||||||||||.
Sbjct 736 AAACC--TTATACGTGTAAGGAATGTGGGAAAGCCTTCAGTGGCAAGTCAAATCTCACAGAGCATGAGAAAATT 807
Query 448 CATATTGGAGAGAAGCCTTTTAAATGTAGTGAATGTGGAACAGCCTTTGGCCAGAAGAAGTACCTCATAAAACA 521
||||||||||||||.||.|..|||||||.|||||||||||||..|||..|.||||||.|.||||||||.|||||
Sbjct 808 CATATTGGAGAGAAACCCTACAAATGTAATGAATGTGGAACAATCTTCAGGCAGAAGCAATACCTCATTAAACA 881
Query 522 TCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCTCTCAGCGA---ACAT 592
|||.||.|||||.||.|||||||||||||||||||||||..|||||||||||||||||||| ||| ||||
Sbjct 882 TCACAATATTCATACAGGAGAGAAACCCTATGAATGTAATAAATGTGGAAAAGCCTTCTCT---CGAATCACAT 952
Query 593 CACTTATTGTACATGTGAGGATTCATTCAGGTGATAAACCTTACGAATGCAATGTTTGTGGAAAAGCCTTCTCT 666
|||||||||||||||||||.||||||.||||||||||.|||||.||.||.||.||.|||||.||||||||||.|
Sbjct 953 CACTTATTGTACATGTGAGAATTCATACAGGTGATAAGCCTTATGAGTGTAAGGTCTGTGGGAAAGCCTTCTGT 1026
Query 667 CAGAGCTCATCTCTCACTGTGCATGTGAGAAGCCATACAGGGGAGAAGCCCTATGGTTGTAATGAATGTGGGAA 740
||.|||||||||||.|||||||||.||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 1027 CAAAGCTCATCTCTTACTGTGCATATGAGAAGCCATACAGGTGAGAAACCCTATGGTTGTAATGAATGTGGGAA 1100
Query 741 AGCTTTCTCTCAGTTCTCAACCCTTGCTCTGCATTTGAGAATACACACAGGTAAGAAGCCTTATCAGTGCAGTG 814
|||.||.||||||||||||||||||||||||||..|||||||.||.||.|||.|.||.|||||||||||.||||
Sbjct 1101 AGCCTTTTCTCAGTTCTCAACCCTTGCTCTGCACATGAGAATCCATACTGGTGAAAAACCTTATCAGTGTAGTG 1174
Query 815 AATGTGGGAAAGCTTTCAGCCAGAAGTCACACCACATTAGACACCAGAAAATTCATACTCAC 876
||||||||||||||||||||||.||||||||.||||||||||||||||.||||||||||||.
Sbjct 1175 AATGTGGGAAAGCTTTCAGCCAAAAGTCACATCACATTAGACACCAGAGAATTCATACTCAT 1236