Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07193
- Subject:
- XR_377291.3
- Aligned Length:
- 2934
- Identities:
- 1541
- Gaps:
- 1233
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCACTAATGCGTTCATGGGCATGTGAATGTCCCAAACATATGTAGCATGTGTCTTTTCATCTACTTGTAATTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATAAATGTACAGCCTTAGATGTCAGCCTTCCATAATTTAGAGATAATAATCTGGAGTCCTTCTGAAATTGCTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAATGTAGATCATTTTTCTCATTTCAGATGCTCCTAATTCCCTTGCAAAGCTTTATTTGCTGTAATATAACCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAACCCTGATCTGCATGTCATTGTGGTTAGCTGATAGAAGGCCAGTATTTAAATTTCTTTGAGGTCTCTTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGTGGCGTCACAGGATGAAGAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACAAAGGAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCGCAGTCAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTCTTACCGCTAGAGCAGGGCTGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGCGCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCCGCGGCAGCCTTTCCTTGCCTGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCT 666
Query 1 -------------------ATGGCTGAAGCGGCCA-CGGGCTTTCTGG-AGC-------AGCTCAAGTCCTGCA 46
|..|||||||||..|| .||....||||| ||| ||||| |..|||||
Sbjct 667 GGCTTTCCATTCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTC--GGACTGCA 738
Query 47 TAGTTTGGTCTT--GGACGTAT-CTGTGGA-CCG---------TGTGGT------------------TCTT-CA 88
|.||.||| ||| .|||...| |||||.| ||| |.||.| |||| ||
Sbjct 739 TTGTCTGG-CTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCACATGCACATCTTACA 811
Query 89 TCGTGCTA-TTCC-------------------TGGTCTACAT--------------CCTGCGGGTGCC------ 122
|..|.||| |||| |..|||| || |||.|.||.|||
Sbjct 812 TTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTA-ATTTTTTTTTAAAGCACCTTCTGGAGCCAGCCAT 884
Query 123 -TTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCC 195
||||..|.|.| |.||| ||.|||||||||||||||||||.|||||.||.|||||||||||||||
Sbjct 885 GTTTGGTACTGA-----ATCTT-----CATTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCC 948
Query 196 CTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAAC 269
||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||.||.|||||
Sbjct 949 CTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAAC 1022
Query 270 TTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACA 343
.||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1023 ATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA 1096
Query 344 ATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA 417
||||||||||||||||.||.||||||||||||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA 1170
Query 418 CTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGA 491
||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||.||||||||
Sbjct 1171 CTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGA 1244
Query 492 CATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAA 565
||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.||||||||||
Sbjct 1245 CATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAA 1318
Query 566 TAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAT 639
|||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1319 TAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAC 1392
Query 640 GAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTG 1466
Query 714 TGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGG 787
|||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.||||||||||
Sbjct 1467 TGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCTTTAAGCAGG 1540
Query 788 CCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAA 861
|||||||||||||||||||.||||||||.||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 1541 CCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAA 1614
Query 862 CATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGAC 935
||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||.||.|||||
Sbjct 1615 CACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGAC 1688
Query 936 CAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAA 1009
|||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.|
Sbjct 1689 CAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGA 1762
Query 1010 ACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA 1083
|||||.|||||||.|||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 ACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA 1836
Query 1084 AGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAA------ 1151
||||||||||||||.||.|||||||||||||||||.||..||||||||||||||||||||||||||||
Sbjct 1837 AGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATCGCC 1910
Query 1152 -------------------------------------------------------------------------- 1151
Sbjct 1911 AGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCAGGGTTGCCACAGC 1984
Query 1152 --------------------------------------------------------ATTCTCTCCTGAGGCTGC 1169
|||||||||.||||||||
Sbjct 1985 TTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCTCTCCAGAGGCTGC 2058
Query 1170 ATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTC 1243
.||||||.||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||.|
Sbjct 2059 GTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCAC 2132
Query 1244 ATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGT 1317
|.|||||||||||.||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||
Sbjct 2133 ACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAAGAGAGGAGACAGT 2206
Query 1318 GAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTG 1391
|||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 2207 GAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGAATCTCTTGCATTG 2280
Query 1392 TACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCT 1465
||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||||.||||||||||
Sbjct 2281 TACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCT 2354
Query 1466 GTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCC 1539
|||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||
Sbjct 2355 GTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCC 2428
Query 1540 TTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGA 1613
|||||.||.|||||.|||||||||.|.||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2429 TTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGA 2502
Query 1614 ACTTATGGGGGTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTG----- 1682
|||||||||.|||||||||||||| |||| |||.|| ||| |||
Sbjct 2503 ACTTATGGGAGTCTTCGCAAAAGC------------TTTC--CTCAGC-----------ACT----TTGTTTGC 2547
Query 1683 ---CAAGAGTATTTTCATGCGTGTTGAAGATGAACTGGAAATC--CCTCC------------GGCA-------- 1731
|..|| |.||| ||..||.||| ||.||||||.| ||||| ||||
Sbjct 2548 CCCCTTGA--ACTTT-----GTTATGGAGA--AAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGA 2612
Query 1732 ----------------CCT-CAAT--TTCAACATTTCCAAAAC------------------------------- 1755
||| |.|| |||| .||||||.|.|
Sbjct 2613 CACGGATCTGAGGGAGCCTCCCATCCTTCA--CTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCAT 2684
Query 1756 -------------------------------------------------------------------------- 1755
Sbjct 2685 GGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTC 2758
Query 1756 -------------------------------------------------------------------------- 1755
Sbjct 2759 CTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGAC 2832
Query 1756 ------------------------------------------------ 1755
Sbjct 2833 TGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATTGCAA 2880
