Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07403
Subject:
NM_001366426.1
Aligned Length:
4429
Identities:
1214
Gaps:
3158

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGCTCCACACTCCACTCGGTTTTCTTCACCCTGAAGGTCAGCATCCTGCTGGGGTCCCTGCTGGGGCTCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTGGGCCTTGAGTTCATGGGCCTCCCCAACCAGTGGGCCCGCTACCTCCGCTGGGATGCCAGCACACGCAGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCTGAGTTTCCAGTTCAAGACCAACGTCTCTACGGGGCTGCTCCTCTACCTGGATGATGGCGGCGTCTGCGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTCCTATGCCTCTCCCTGGTGGATGGCCGCGTTCAGCTCCGCTTCAGCATGGACTGTGCCGAGACTGCCGTGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTCCAACAAGCAGGTGAATGACAGCAGCTGGCACTTCCTCATGGTGAGCCGTGACCGCCTGCGCACGGTGCTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGCTTGATGGCGAGGGCCAGTCTGGGGAGCTGCAGCCCCAGCGGCCCTACATGGATGTGGTCAGTGACTTGTTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTGGTGGAGTCCCTACTGACATACGACCTTCTGCCCTGACCCTTGATGGAGTTCAGGCCATGCCCGGCTTCAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGGGTTAATTCTGGATCTCAAGTATGGAAACTCGGAGCCTCGGCTTCTGGGGAGCCGGGGTGTCCAGATGGATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGAGGGACCCTGTGGTGAGCGTCCCTGTGAAAATGGTGGGATCTGCTTTCTCCTGGACGGCCACCCCACCTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GACTGTTCTACCACTGGCTATGGTGGCAAGCTCTGCTCAGAAGATGTCAGTCAAGATCCAGGCCTCTCCCACCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CATGATGAGTGAACAAGGTAGAAGTAAAGCTCGAGAGGAGAATGTGGCCACTTTCCGAGGCTCAGAGTATCTGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCTACGACCTGTCTCAGAACCCGATCCAGAGCAGCAGTGATGAAATCACCCTCTCCTTTAAGACCTGGCAGCGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AACGGCCTCATCCTGCACACGGGCAAGTCGGCTGACTATGTCAACCTGGCTCTGAAGGATGGTGCGGTCTCCTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGTCATTAACCTGGGGTCCGGGGCCTTTGAGGCCATTGTGGAGCCAGTGAATGGAAAATTCAACGACAACGCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGCATGATGTCAAAGTGACACGCAACCTCCGGCAGGTGACAATCTCTGTGGATGGCATTCTTACCACGACGGGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TACACTCAAGAGGACTATACCATGCTGGGCTCGGACGACTTCTTCTATGTAGGAGGAAGCCCAAGTACCGCTGA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTTGCCTGGCTCCCCTGTCAGCAACAACTTCATGGGCTGCCTTAAAGAGGTTGTTTATAAGAATAATGACATCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTCTGGAGCTGTCTCGCCTGGCCCGGATTGCGGACACCAAGATGAAAATCTATGGCGAAGTTGTGTTTAAGTGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAGAATGTGGCCACACTGGACCCCATCAACTTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAAACGTATGGGCTCCATCTCCTTTGACTTCCGCACCACAGAGCCCAATGGCCTGATCCTCTTCACTCATGGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGCCCCAAGAGAGGAAGGATGCTCGGAGCCAGAAGAATACAAAAGTAGACTTCTTTGCCGTGGAACTCCTCGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGCAACCTGTACTTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAAAGCCACTCAGAAGAAAGCCAATGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGGGGAATGGTACCATGTGGACATTCAGCGAGATGGCAGATCAGGTACTATATCAGTGAACAGCAGGCGCACGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CATTCACCGCCAGTGGGGAGAGCGAGATCCTGGACCTGGAAGGAGACATGTACCTGGGAGGGCTGCCGGAGAAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGTGCTGGCCTTATTCTCCCCACCGAGCTGTGGACTGCCATGCTCAACTATGGCTACGTGGGCTGCATCCGCGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCTATTCATTGATGGGCGCAGCAAGAACATTCGACAGCTGGCAGAGATGCAGAATGCTGCGGGTGTCAAGTCCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCTGTTCACGGATGAGTGCCAAGCAGTGTGACAGCTACCCCTGCAAGAATAATGCTGTGTGCAAGGACGGCTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AACCGCTTCATCTGCGACTGCACCGGCACCGGATACTGGGGAAGAACCTGCGAAAGGGAGGCATCCATCCTGAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTATGATGGTAGCATGTACATGAAGATCATCATGCCCATGGTCATGCATACTGAGGCAGAGGATGTGTCCTTCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCTTCATGTCCCAGCGAGCTTATGGGCTGCTGGTGGCTACGACCTCCAGGGACTCTGCCGACACCCTGCGTCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGCTGGATGGGGGGCGTGTCAAGCTCATGGTTAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACCAGAGACCTTGTATGCAGGGCAGAAGCTCAATGACAACGAGTGGCACACCGTTCGGGTGGTGCGGAGAGGAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AAAGCCTTAAGTTAACCGTGGATGATGATGTGGCTGAGGGTACAATGGTGGGAGACCATACCCGTTTGGAGTTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CACAACATTGAAACGGGAATCATGACTGAGAAACGCTACATCTCCGTTGTCCCCTCCAGCTTTATTGGCCATCT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCAGAGCCTCATGTTTAATGGCCTTCTCTACATTGACTTGTGCAAAAATGGTGACATTGATTATTGTGAGCTGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGGCTCGTTTTGGACTGAGGAACATCATCGCTGACCCTGTCACCTTTAAGACCAAGAGCAGCTACCTGAGCCTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GCCACTCTTCAGGCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGACCACCTCACCAGATGGCTTCATTCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTTCAATAGTGGTGATGGCAATGACTTCATTGCAGTCGAGCTTGTCAAGGGGTATATACACTACGTTTTTGACC  2812

Query    1  ------------------------------------------------ATG--CACCTG----AGAAT------  14
                                                            |||  .|||.|    |.|||      
Sbjct 2813  TCGGAAACGGTCCCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAATGACAACCAGTGGCACAATGTCGTC  2886

Query   15  -CCACGCGAGAC----GGAGCCCTCCTCGCC-------GGCCGGCC----TGGACGCTTGGG------------  60
             .|||.||.|||    |.|.|.|||.|.|||       ||.| .||    |||.|.||..||            
Sbjct 2887  ATCACTCGGGACAATAGTAACACTCATAGCCTGAAAGTGGAC-ACCAAAGTGGTCACTCAGGTTATCAATGGTG  2959

Query   61  ------ATCTGG---------------------TTCCTGTTCTG------GGGATGTA----------------  85
                  ||||||                     |..|||.||||      ||.|||||                
Sbjct 2960  CCAAAAATCTGGATTTGAAAGGTGATCTCTATATGGCTGGTCTGGCCCAAGGCATGTACAGCAACCTCCCAAAG  3033

Query   86  -TCGTCAGCTCT---GTATGGAGTTC------TTCTA--AT--GTAG-CTT---------CCT------CCTCC  129
             ||||...||||   | ||||..|||      .||||  ||  ||.| |||         |||      ||||.
Sbjct 3034  CTCGTGGCCTCTCGAG-ATGGCTTTCAGGGCTGTCTAGCATCAGTGGACTTGAATGGACGCCTGCCAGACCTCA  3106

Query  130  TCCA----CCTCTTCCTCGCCGGGGTCTCACTCTCAGCACGAGC--------------ACCATTTCCA--TGGC  183
            ||.|    .||||||.|||..|.||        .|||..|||||              .|||.|.|||  ||.|
Sbjct 3107  TCAATGATGCTCTTCATCGGAGCGG--------ACAGATCGAGCGTGGCTGTGAAGGACCCAGTACCACCTGCC  3172

Query  184  AGCAAGCATCACTCA-GTGCCTA------TTTCT------ATCTATCG------TTCCCCTGT--TTCCCTTCG  236
            ||.|||    |.||| |||||.|      ..|||      |.|.||.|      |||.|||||  ||  .|||.
Sbjct 3173  AGGAAG----ATTCATGTGCCAACCAGGGGGTCTGCATGCAACAATGGGAGGGCTTCACCTGTGATT--GTTCT  3240

Query  237  AGGA-----------GGACAC------------GCTGGCGCTACGTACATCTTTGGGAAAAGTGGTGGGCTTAT  287
            |.||           |||.||            .||||||||||||||||||||||||||||||||||||||||
Sbjct 3241  ATGACCTCTTATTCTGGAAACCAGTGCAATGATCCTGGCGCTACGTACATCTTTGGGAAAAGTGGTGGGCTTAT  3314

Query  288  CCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCCTTGCCGTGGGCTTCAGCACCACTG  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3315  CCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCCTTGCCGTGGGCTTCAGCACCACTG  3388

Query  362  TGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGACTTCCTCCAGCTTCACATAGAACAG  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3389  TGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGACTTCCTCCAGCTTCACATAGAACAG  3462

Query  436  GGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAAAGAGGAGAGAACCCCTGTAAATGA  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3463  GGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAAAGAGGAGAGAACCCCTGTAAATGA  3536

Query  510  CGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCCTGCAGGTGGACAACTGGCCAGTGA  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3537  CGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCCTGCAGGTGGACAACTGGCCAGTGA  3610

Query  584  ATGAACATTATCCTAC----------------------------------------------------------  599
            ||||||||||||||||                                                          
Sbjct 3611  ATGAACATTATCCTACAGGCAACACTGATAATGAACGCTTCCAAATGGTAAAACAGAAAATCCCCTTCAAATAT  3684

Query  600  --------------------------------AGGCCGGCAGTTAACCATCTTCAACACTCAGGCGCAAATAGC  641
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3685  AATCGGCCTGTAGAGGAGTGGCTGCAGGAAAAAGGCCGGCAGTTAACCATCTTCAACACTCAGGCGCAAATAGC  3758

Query  642  CATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTAC  715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3759  CATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTAC  3832

Query  716  TGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAGTCCCATCA  789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3833  TGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAGTCCCATCA  3906

Query  790  ATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCTACTACTGTCATGGAAACCACTACTACAAT  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3907  ATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCTACTACTGTCATGGAAACCACTACTACAAT  3980

Query  864  GGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGTTTCATCTG  937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3981  GGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGTTTCATCTG  4054

Query  938  CTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATGTGAGCCGAGTACAGGTAGGTCAGCAAACCCCACGGAG  1011
            ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||
Sbjct 4055  CTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATGTGAGCCGAGTA---------CAGCAAACCCCACGGAG  4119

Query 1012  CCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGG  1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4120  CCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGG  4193

Query 1086  CATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGG  1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4194  CATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGG  4267

Query 1160  GGTCCTATCAAGTGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAG  1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4268  GGTCCTATCAAGTGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAG  4341

Query 1234  AAGCAGCAGAGCTCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGCATTACGTG  1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 4342  AAGCAGCAGAGCTCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGTATTACGTG  4404

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