Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07403
- Subject:
- XM_011537373.1
- Aligned Length:
- 4363
- Identities:
- 1214
- Gaps:
- 3092
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTCCACACTCCACTCGGTTTTCTTCACCCTGAAGGTCAGCATCCTGCTGGGGTCCCTGCTGGGGCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGGCCTTGAGTTCATGGGCCTCCCCAACCAGTGGGCCCGCTACCTCCGCTGGGATGCCAGCACACGCAGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGAGTTTCCAGTTCAAGACCAACGTCTCTACGGGGCTGCTCCTCTACCTGGATGATGGCGGCGTCTGCGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCTATGCCTCTCCCTGGTGGATGGCCGCGTTCAGCTCCGCTTCAGCATGGACTGTGCCGAGACTGCCGTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTCCAACAAGCAGGTGAATGACAGCAGCTGGCACTTCCTCATGGTGAGCCGTGACCGCCTGCGCACGGTGCTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTTGATGGCGAGGGCCAGTCTGGGGAGCTGCAGCCCCAGCGGCCCTACATGGATGTGGTCAGTGACTTGTTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTGGTGGAGTCCCTACTGACATACGACCTTCTGCCCTGACCCTTGATGGAGTTCAGGCCATGCCCGGCTTCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGGTTAATTCTGGATCTCAAGTATGGAAACTCGGAGCCTCGGCTTCTGGGGAGCCGGGGTGTCCAGATGGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGAGGGACCCTGTGGTGAGCGTCCCTGTGAAAATGGTGGGATCTGCTTTCTCCTGGACGGCCACCCCACCTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTGTTCTACCACTGGCTATGGTGGCAAGCTCTGCTCAGAAGATGTCAGTCAAGATCCAGGCCTCTCCCACCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATGATGAGTGAACAAGGTAGAAGTAAAGCTCGAGAGGAGAATGTGGCCACTTTCCGAGGCTCAGAGTATCTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCTACGACCTGTCTCAGAACCCGATCCAGAGCAGCAGTGATGAAATCACCCTCTCCTTTAAGACCTGGCAGCGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACGGCCTCATCCTGCACACGGGCAAGTCGGCTGACTATGTCAACCTGGCTCTGAAGGATGGTGCGGTCTCCTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGTCATTAACCTGGGGTCCGGGGCCTTTGAGGCCATTGTGGAGCCAGTGAATGGAAAATTCAACGACAACGCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCATGATGTCAAAGTGACACGCAACCTCCGGCAGCACTCAGGCATCGGACACGCTATGGTGACAATCTCTGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATGGCATTCTTACCACGACGGGCTACACTCAAGAGGACTATACCATGCTGGGCTCGGACGACTTCTTCTATGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGAGGAAGCCCAAGTACCGCTGACTTGCCTGGCTCCCCTGTCAGCAACAACTTCATGGGCTGCCTTAAAGAGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTGTTTATAAGAATAATGACATCCGTCTGGAGCTGTCTCGCCTGGCCCGGATTGCGGACACCAAGATGAAAATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TATGGCGAAGTTGTGTTTAAGTGTGAGAATGTGGCCACACTGGACCCCATCAACTTTGAGACCCCAGAGGCTTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATCAGCTTGCCCAAGTGGAACACTAAACGTATGGGCTCCATCTCCTTTGACTTCCGCACCACAGAGCCCAATG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTGATCCTCTTCACTCATGGAAAGCCCCAAGAGAGGAAGGATGCTCGGAGCCAGAAGAATACAAAAGTAGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCTTTGCCGTGGAACTCCTCGATGGCAACCTGTACTTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGCCACTCAGAAGAAAGCCAATGATGGGGAATGGTACCATGTGGACATTCAGCGAGATGGCAGATCAGGTACTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TATCAGTGAACAGCAGGCGCACGCCATTCACCGCCAGTGGGGAGAGCGAGATCCTGGACCTGGAAGGAGACATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TACCTGGGAGGGCTGCCGGAGAACCGTGCTGGCCTTATTCTCCCCACCGAGCTGTGGACTGCCATGCTCAACTA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGCTACGTGGGCTGCATCCGCGACCTATTCATTGATGGGCGCAGCAAGAACATTCGACAGCTGGCAGAGATGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGAATGCTGCGGGTGTCAAGTCCTCCTGTTCACGGATGAGTGCCAAGCAGTGTGACAGCTACCCCTGCAAGAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATGCTGTGTGCAAGGACGGCTGGAACCGCTTCATCTGCGACTGCACCGGCACCGGATACTGGGGAAGAACCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGAAAGGGAGGCATCCATCCTGAGCTATGATGGTAGCATGTACATGAAGATCATCATGCCCATGGTCATGCATA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCCCAGCGAGCTTATGGGCTGCTGGTGGCTACGACCTCCAGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GACTCTGCCGACACCCTGCGTCTGGAGCTGGATGGGGGGCGTGTCAAGCTCATGGTTAACTTAGACTGTATCAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATAAACTGTAACTCCAGCAAAGGACCAGAGACCTTGTATGCAGGGCAGAAGCTCAATGACAACGAGTGGCACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCGTTCGGGTGGTGCGGAGAGGAAAAAGCCTTAAGTTAACCGTGGATGATGATGTGGCTGAGGGTACAATGGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGAGACCATACCCGTTTGGAGTTCCACAACATTGAAACGGGAATCATGACTGAGAAACGCTACATCTCCGTTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCCCTCCAGCTTTATTGGCCATCTGCAGAGCCTCATGTTTAATGGCCTTCTCTACATTGACTTGTGCAAAAATG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTGACATTGATTATTGTGAGCTGAAGGCTCGTTTTGGACTGAGGAACATCATCGCTGACCCTGTCACCTTTAAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ACCAAGAGCAGCTACCTGAGCCTTGCCACTCTTCAGGCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CACCTCACCAGATGGCTTCATTCTCTTCAATAGTGGTGATGGCAATGACTTCATTGCAGTCGAGCTTGTCAAGG 2812
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 2813 GGTATATACACTACGTTTTTGACCTCGGAAACGGTCCCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAAT 2886
Query 3 G--CACCTG----AGAAT-------CCACGCGAGAC----GGAGCCCTCCTCGCC-------GGCCGGCC---- 48
| .|||.| |.||| .|||.||.||| |.|.|.|||.|.||| ||.| .||
Sbjct 2887 GACAACCAGTGGCACAATGTCGTCATCACTCGGGACAATAGTAACACTCATAGCCTGAAAGTGGAC-ACCAAAG 2959
Query 49 TGGACGCTTGGG------------------ATCTGG---------------------TTCCTGTTCTG------ 77
|||.|.||..|| |||||| |..|||.||||
Sbjct 2960 TGGTCACTCAGGTTATCAATGGTGCCAAAAATCTGGATTTGAAAGGTGATCTCTATATGGCTGGTCTGGCCCAA 3033
Query 78 GGGATGTA-----------------TCGTCAGCTCT---GTATGGAGTTC------TTCTA--AT--GTAG-CT 120
||.||||| ||||...|||| | ||||..||| .|||| || ||.| ||
Sbjct 3034 GGCATGTACAGCAACCTCCCAAAGCTCGTGGCCTCTCGAG-ATGGCTTTCAGGGCTGTCTAGCATCAGTGGACT 3106
Query 121 T---------CCT------CCTCCTCCA----CCTCTTCCTCGCCGGGGTCTCACTCTCAGCACGAGC------ 169
| ||| ||||.||.| .||||||.|||..|.|| .|||..|||||
Sbjct 3107 TGAATGGACGCCTGCCAGACCTCATCAATGATGCTCTTCATCGGAGCGG--------ACAGATCGAGCGTGGCT 3172
Query 170 --------ACCATTTCCA--TGGCAGCAAGCATCACTCA-GTGCCTA------TTTCT------ATCTATCG-- 218
.|||.|.||| ||.|||.||| |.||| |||||.| ..||| |.|.||.|
Sbjct 3173 GTGAAGGACCCAGTACCACCTGCCAGGAAG----ATTCATGTGCCAACCAGGGGGTCTGCATGCAACAATGGGA 3242
Query 219 ----TTCCCCTGT--TTCCCTTCGAGGA-----------GGACAC------------GCTGGCGCTACGTACAT 263
|||.||||| || .|||.|.|| |||.|| .||||||||||||||||
Sbjct 3243 GGGCTTCACCTGTGATT--GTTCTATGACCTCTTATTCTGGAAACCAGTGCAATGATCCTGGCGCTACGTACAT 3314
Query 264 CTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCC 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3315 CTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCC 3388
Query 338 TTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGAC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3389 TTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGAC 3462
Query 412 TTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3463 TTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAA 3536
Query 486 AGAGGAGAGAACCCCTGTAAATGACGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3537 AGAGGAGAGAACCCCTGTAAATGACGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCC 3610
Query 560 TGCAGGTGGACAACTGGCCAGTGAATGAACATTATCCTACAGGCCGGCAGTTAACCATCTTCAACACTCAGGCG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3611 TGCAGGTGGACAACTGGCCAGTGAATGAACATTATCCTACAGGCCGGCAGTTAACCATCTTCAACACTCAGGCG 3684
Query 634 CAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3685 CAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTT 3758
Query 708 GAAAGTACTGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3759 GAAAGTACTGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAG 3832
Query 782 TCCCATCAATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCTACTACTGTCATGGAAACCACT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3833 TCCCATCAATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCTACTACTGTCATGGAAACCACT 3906
Query 856 ACTACAATGGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3907 ACTACAATGGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGT 3980
Query 930 TTCATCTGCTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATGTGAGCCGAGTACAGGTAGGTCAGCAAACC 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3981 TTCATCTGCTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATGTGAGCCGAGTA---------CAGCAAACC 4045
Query 1004 CCACGGAGCCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4046 CCACGGAGCCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATG 4119
Query 1078 GTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4120 GTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAG 4193
Query 1152 GGACGAGGGGTCCTATCAAGTGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4194 GGACGAGGGGTCCTATCAAGTGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCA 4267
Query 1226 TGAAGGAGAAGCAGCAGAGCTCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGCATTACGTG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 4268 TGAAGGAGAAGCAGCAGAGCTCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGTATTACGTG 4338
