Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07403
- Subject:
- XM_017314983.1
- Aligned Length:
- 4481
- Identities:
- 1118
- Gaps:
- 3238
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTTTACCCTCCACTCAGTTTTCTTCACCTTGAAGGTGAGCATCTTTCTGGGCTCCCTGGTGGGGCTTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGGTCTGGAGTTCATGGGCCTTCCTAACCAGTGGGCCCGCTACCTGCGTTGGGATGCAAGCACGCGCAGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGAGCTTCCAGTTCAAGACCAATGTTTCCACTGGGCTGCTCCTGTATTTGGATGATGGTGGTGTCTGTGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCTCTGTCTCTCCCTGGTGGATGGCCGCGTTCAGCTCCGCTTTAGCATGGACTGTGCCGAGACCACTGTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCCAACAAGCAGGTGAACGACAGCAGTTGGCACTTCCTCATGGTGAGCCGTGATCGTGTGCGCACTGGGCTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGATTGATGGTGAGGGCCAGTCTGGAGAGCTACGGCCCCAGCGGCCTTATATGGATGTGGTCAGTGATTTGTTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCGGTGGCGTCCCCGCTGACATTCGACCTTCTGCCCTGACCCTCGATGGAGTACAGAGCATGCCTGGCTTTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGATTAATGCTGGATCTCAAGTATGGCAACTCGGAACCTCGGCTTCTGGGGAGCCAGAGCGTCCAGTTAGAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGAGGGACCCTGTGGCGAGCGTCCCTGTGAAAATGGTGGGATCTGCTTCCTCTTGGATGGTCATCCCACCTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTGTTCTACCACTGGCTATGGTGGCACACTCTGCTCAGAAGATGTCAGTCAAGGTCCAGGCCTCTCCCATCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TATGATGAGTGAACAAGGTAGAAGTAAAGCACGAGAGGAGAACGTGGCCACCTTCCGAGGCTCAGAGTATCTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCTATGACCTGTCCCAGAACCCCATCCAGAGCAGCAGCGACGAAATCACCCTTTCCTTTAAGACCTGGCAACGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGGGCTCATCCTCCACACTGGCAAGTCGGCCGACTATGTTAACCTGGCTCTGAAGGATGGTGCGGTCTCCTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGTCATTAACCTGGGGTCCGGGGCCTTTGAGGCCATTGTGGAGCCAGTGAATGGGAAATTCAACGACAACGCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCATGATGTCAAAGTGACACGCAATCTTCGGCAGCACTCAGGCATCGGACACGCTATGGTGACAATCTCTGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATGGCATCCTAACCACAACGGGCTACACTCAAGAGGACTACACCATGCTGGGCTCAGATGACTTCTTCTATGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGGTGGAAGCCCAAGTACCGCAGACTTGCCAGGTTCACCTGTGAGCAACAACTTCATGGGCTGCCTTAAAGAGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTGTTTATAAGAATAATGACATCCGTCTAGAGCTGTCTCGCTTGGCCCGGATTGGAGACACCAAGATGAAAATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TATGGTGAAGTTGTGTTCAAGTGTGAGAACGTGGCCACACTGGATCCCATCAACTTTGAGACCCCAGAGGCTTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATCAGCTTGCCCAAGTGGAACACCAAACGTATGGGCTCCATTTCCTTTGACTTTCGCACCACTGAGCCCAACG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTGATTCTCTTCACTCACGGGAAGCCTCAAGAAAGGAAAGATGTCCGGAGCCAAAAGAACACAAAAGTTGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCTTTGCTGTGGAACTTCTTGATGGCAACCTGTATTTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCCACTCAGAAGAAGGCCAATGATGGGGAATGGTACCACGTGGATATTCAGCGTGATGGCAGATCAGGTACCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TATCTGTGAACAGCAGGCGCACGCCATTCACCGCCAGTGGGGAGAGTGAAATTCTCGACCTGGAGGGGGACATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATCTGGGCGGGCTGCCAGAGAACCGAGCTGGCCTCATCCTCCCCACGGAGCTCTGGACCGCCATGCTCAACTA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTTACGTGGGCTGCATCCGCGACCTGTTCATCGATGGGCGCAGCAAGAACATCCGGCAGCTGGCGGAGATGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGAACGCAGCAGGCGTCAAGTCCTCCTGTTCACGCATGAGCGCCAAGCAGTGTGACAGCTACCCCTGCAAGAAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AACGCGGTGTGCAAGGACGGCTGGAACCGCTTCATCTGCGACTGCACTGGCACCGGCTACTGGGGGAGAACCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGAAAGAGAGGCATCTATCCTGAGCTATGACGGCAGCATGTACATGAAGGTCATCATGCCCATGGTGATGCACA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCACAGCGAGCCTATGGGCTACTGGTAGCCACAACCTCCAGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GATTCTGCAGATACACTGCGTCTAGAGTTGGATGGTGGGCGTGTCAAGCTCATGGTTAACTTAGACTGTATCAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATAAACTGTAACTCCAGCAAAGGACCTGAGACCCTGTATGCAGGGCAGAAGCTCAATGACAATGAGTGGCACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCGTCCGGGTAGTGCGGAGAGGAAAAAGCCTTAAGCTAACAGTGGATGATGATGTGGCTGAGGGGACAATGGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGCGACCACACCCGCCTGGAATTCCACAATATTGAAACTGGTATCATGACTGAGAAGCGTTACATCTCTGTGGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCCCTCCAGTTTCATTGGCCATCTACAGAGCCTCATGTTCAATGGCTTACTGTACATTGATTTGTGCAAAAATG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCGACATCGACTACTGTGAACTGAAGGCTCGCTTTGGACTGAGAAACATCATCGCCGACCCTGTCACTTTTAAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ACCAAGAGCAGCTACCTGACCCTCGCCACCCTACAGGCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CACTTCAGCTGATGGCTTCATTCTCTTCAATAGCGGAGATGGCAATGATTTTATTGCAGTTGAGCTGGTCAAGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGTACATACACTATGTGTTTGATCTCGGCAATGGTCCCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAAT 2886
Query 1 ---------------------------------------------ATGCAC---CTGA-----GAATCCACGCG 21
|..||| |||| ||..|||.|..
Sbjct 2887 GACAACCAGTGGCACAACGTGGTCATCACCAGGGACAGCAGTAACACCCACAGTCTGAAGGTGGACACCAAGGT 2960
Query 22 AG---------------ACGGAGCC------CT---------------CCTC------GCCGGC--------CG 45
|| |.||.||| || |||| ||.||| .|
Sbjct 2961 AGTCACTCAGGTCATCAATGGTGCCAAAAATCTGGATTTGAAAGGTGACCTCTATATGGCTGGCTTAGCCCAGG 3034
Query 46 GCCTGGAC--------------GCTTGGGATCTGGTTCCTGTTCTGGGGATGTATCGTCAG-----------CT 94
||.||.|| ||||| ||| || ||..||||||.|| .|||| ||
Sbjct 3035 GCATGTACAGCAACCTTCCCAAGCTTG-----TGG--CC---TCCAGGGATGGAT-TTCAGGGCTGCCTGGCCT 3097
Query 95 CTGTATGGAGTTCTTCTAATGTA--GCTTCCT--CCTCCTCCAC----CTCTTCC---------------TCG- 144
||| ||||.|| .||||.| .||.||| .|||.||.|| ||| ||| |||
Sbjct 3098 CTG--TGGACTT----GAATGGACGCCTGCCTGATCTCATCAACGATGCTC-TCCACAGGAGTGGACAGATCGA 3164
Query 145 CCGGGGTCT----------CA-------CTCTCAGCACGA-----GCACCA---------TTTCCATGGCAGC- 186
.||.|| || || ||.||||.|.|| ||.||| |||.||| |||||
Sbjct 3165 GCGAGG-CTGTGAAGGACCCAGTACAACCTGTCAGGAGGATTCATGCGCCAACCAGGGAGTTTGCAT-GCAGCA 3236
Query 187 ------AAGCATCACTCAGTGCCTATTTCTATCTATCGTTCC-------CCTGTTTCCCTTCGAGGAGGAC--- 244
|.|..|||| |.|||.|| |.||| |.|.|| || ||| .||
Sbjct 3237 GTGGGAAGGTTTCAC-CTGTGACT-------------GCTCCATGACATCATATT---CT----GGA-AACCAG 3288
Query 245 -------ACGCTGGCGCTACGTACATCTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTGGCCAGCCAATGA 311
||.||||.||.||.|||||||||||||||||.|||||.||.||||||||.|||||||||||.|||||
Sbjct 3289 TGCAATGACCCTGGTGCAACATACATCTTTGGGAAAAGCGGTGGCCTCATCCTCTATACCTGGCCAGCAAATGA 3362
Query 312 CAGGCCCAGCACGCGGTCTGACCGCCTTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCATCTTGGTCCGCA 385
|||.||||||||.||.||||||||.||.|||||||||||||||||.||||||||||||||.|||||.||.||||
Sbjct 3363 CAGACCCAGCACACGCTCTGACCGTCTCGCCGTGGGCTTCAGCACTACTGTGAAGGATGGTATCTTAGTACGCA 3436
Query 386 TCGACAGTGCTCCAGGACTTGGTGACTTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGAGTTGTCTTCAAC 459
|.|||||.||.||.||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||.
Sbjct 3437 TTGACAGCGCCCCTGGACTTGGCGACTTCCTCCAGCTTCACATAGAACAAGGGAAAATTGGAGTTGTCTTCAAT 3510
Query 460 ATTGGCACAGTTGACATCTCCATCAAAGAGGAGAGAACCCCTGTAAATGACGGCAAATACCATGTGGTACGCTT 533
|||||||||||||||||||||||||||||.||||||||.|||||.|||||.|||||||||||.||.||.|||||
Sbjct 3511 ATTGGCACAGTTGACATCTCCATCAAAGAAGAGAGAACTCCTGTCAATGATGGCAAATACCACGTTGTGCGCTT 3584
Query 534 CACCAGGAACGGCGGCAACGCCACCCTGCAGGTGGACAACTGGCCAGTGAATGAACATTATCCTAC-------- 599
|||||||||.||.||.||.||.||.||.||||||||||||||||||||||||||.||.||||||||
Sbjct 3585 CACCAGGAATGGGGGAAATGCTACACTTCAGGTGGACAACTGGCCAGTGAATGAGCACTATCCTACAGGCAACA 3658
Query 600 -------------------------------------------------------------------------- 599
Sbjct 3659 CTGATAATGAACGCCTCCAAATGGTAAAACAGAAAATCCCCTTCAAATATAACCGGCCCGTAGAGGAGTGGCTG 3732
Query 600 --------AGGCCGGCAGTTAACCATCTTCAACACTCAGGCGCAAATAGCCATTGGTGGAAAGGACAAAGGACG 665
||||||||||.||||||||||||||||.|||||||||||||||||.||.|||||||||||||||||
Sbjct 3733 CAGGAAAAAGGCCGGCAGCTAACCATCTTCAACACCCAGGCGCAAATAGCCATCGGAGGAAAGGACAAAGGACG 3806
Query 666 CCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTACTGAACATGGCGGCTGAGAACAACC 739
.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 3807 TCTCTTCCAAGGTCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTACTGAACATGGCAGCTGAGAACAACC 3880
Query 740 CCAATATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAGTCCCATCAATTTTGGGAACAACACAGACGACC 813
|.|||||||||||||||||||||||.|||||.||.|||||||||||||||.|.|..||||||||||||||.||.
Sbjct 3881 CTAATATTAAAATCAATGGAAGTGTCCGGCTAGTGGGAGAAGTCCCATCAGTCTCAGGAACAACACAGACAACG 3954
Query 814 TCCATGCCACCAGAAATGTCTACTACTGTCATGGAAACCACTACTACAATGGCGACTACCACAACCCGTAAGAA 887
|||||||||||.|||||||||||.||.||||||||||||||.||.||.|||||.||.|||||.|||||.|||||
Sbjct 3955 TCCATGCCACCTGAAATGTCTACCACCGTCATGGAAACCACCACCACCATGGCTACGACCACCACCCGAAAGAA 4028
Query 888 TCGCTCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAG 961
.|||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4029 CCGCTCTACAGCCAGCATTCAGCCCACGTCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAG 4102
Query 962 ACTTTGTTGAATGTGAGCCGAGTACAGGTAGGTCAGCAAACCCCACGGAGCCGGGAATCAGACGGGTTCCGGGG 1035
|||||||.||||||||.||.|||| |||||||||||||||||||.|||||||||||||||||||||
Sbjct 4103 ACTTTGTCGAATGTGAACCAAGTA---------CAGCAAACCCCACGGAGCCAGGAATCAGACGGGTTCCGGGG 4167
Query 1036 GCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTG 1109
|||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4168 GCCTCAGAGGTGATCCGGGAGTCCAGCAGTACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTG 4241
Query 1110 CATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGC 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 4242 CATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGA 4315
Query 1184 GGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAGCAG--AGCTCGAAGAGCG 1255
|||||||||||||||||||.||||||||||||||||||||||||||||||||||| || |||||.|||||||
Sbjct 4316 GGAACTACATCAGCAACTCGGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCA--AGCCAGCTCCAAGAGCG 4387
Query 1256 GCCACAAGAAACAGAAAAACAAGGACAGGGAGCATTACGTG 1296
||||.||||||||||||||||||||||.||||.||||.|||
Sbjct 4388 GCCATAAGAAACAGAAAAACAAGGACAAGGAGTATTATGTG 4428
