Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07408
Subject:
XM_017005339.2
Aligned Length:
2580
Identities:
1320
Gaps:
1260

Alignment

Query    1  ATGATGAGCATCAAAGCCTTTACGCTTGTCTCTGCTGTGGAGCGGGAGCTGCTGATGGGCGACAAGGAGCGCGT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAACATAGAGTGCGTGGAGTGCTGCGGCAGGGACCTCTACGTGGGCACCAACGACTGCTTCGTCTACCACTTCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGTTGGAGGAGAGGCCAGTGCCTGCTGGGCCAGCCACGTTCACTGCCACCAAACAGCTGCAGAGACACTTGGGC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TTCAAGAAGCCCGTGAACGAGCTGCGCGCGGCCTCAGCACTCAACAGGCTGCTGGTGCTGTGTGACAACTCCAT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAGCCTGGTCAACATGCTGAACCTCGAGCCAGTGCCTTCGGGGGCCCGCATCAAGGGGGCAGCCACGTTTGCAC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TGAACGAGAACCCTGTGAGTGGGGACCCCTTCTGTGTAGAAGTTTGCATCATCTCTGTCAAACGCAGAACCATC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CAGATGTTTCTGGTGTACGAGGACCGGGTGCAGATCGTCAAGGAGGTGTCGACTGCCGAACAGCCCCTCGCTGT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GGCTGTGGACGGCCACTTCCTGTGTCTGGCTCTGACCACTCAGTACATCATCCACAATTACAGCACAGGCGTCT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  CCCAGGACCTTTTTCCCTACTGCAGTGAGGAGAGGCCGCCGATCGTCAAGAGGATAGGGAGACAGGAGTTCCTG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CTGGCGGGCCCCGGAGGGCTGGGCATGTTTGCCACAGTCGCAGGGATATCCCAGCGTGCCCCCGTGCACTGGTC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  GGAGAATGTGATTGGGGCGGCTGTGTCCTTTCCATACGTCATAGCGCTCGATGACGAATTCATCACAGTCCACA  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  GCATGTTGGATCAGCAACAGAAGCAGACGCTGCCCTTTAAGGAGGGCCATATCCTACAGGACTTTGAAGGAAGA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GTGATCGTTGCCACAAGTAAAGGAGTTTACATCTTGGTTCCATTACCTTTGGAAAAACAAATACAGGATCTTCT  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  AGCAAGCCGCAGAGTAGAAGAGGCTTTGGTTTTAGCAAAAGGAGCCCGGAGGAACATTCCAAAGGAAAAATTTC  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  AGGTAATGTACAGAAGGATTCTGCAGCAGGCGGGATTTATACAGTTTGCACAACTTCAGTTCCTGGAAGCTAAA  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  GAGCTCTTCAGAAGCGGCCAGCTTGATGTCCGGGAGCTGATCTCTCTCTACCCCTTCCTGTTGCCCACCTCCTC  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  CTCCTTCACCCGGTCCCACCCTCCTCTTCATGAGTACGCAGACCTGAACCAGCTGACCCAGGGGGACCAGGAGA  1258
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1259  AGATGGCCAAGTGCAAACGCTTCCTCATGAGCTACCTGAACGAGGTCCGCAGCACAGAGGTAGCAAATGGCTAC  1332
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  --ATGGCCAAGTGCAAACGCTTCCTCATGAGCTACCTGAACGAGGTCCGCAGCACAGAGGTAGCAAATGGCTAC  72

Query 1333  AAGGAGGACATCGACACAGCCTTGCTCAAACTGTATGCAGAGGCTGACCACGACAGCCTGCTGGACCTCCTGGT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   73  AAGGAGGACATCGACACAGCCTTGCTCAAACTGTATGCAGAGGCTGACCACGACAGCCTGCTGGACCTCCTGGT  146

Query 1407  CACTGAGAACTTCTGTCTTCTGACGGACAGTGCTGCCTGGCTAGAGAAGCACAAAAAGTATTTTGCACTTGGAC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  CACTGAGAACTTCTGTCTTCTGACGGACAGTGCTGCCTGGCTAGAGAAGCACAAAAAGTATTTTGCACTTGGAC  220

Query 1481  TGCTCTATCATTATAATAACCAAGATGCTGCTGCAGTTCAGTTGTGGGTGAACATTGTGAATGGCGATGTCCAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  TGCTCTATCATTATAATAACCAAGATGCTGCTGCAGTTCAGTTGTGGGTGAACATTGTGAATGGCGATGTCCAG  294

Query 1555  GACTCCACACGCTCAGACCTGTATGAATACATCGTGGATTTTCTTACCTACTGCTTAGACGAGGAACTAGTGTG  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  GACTCCACACGCTCAGACCTGTATGAATACATCGTGGATTTTCTTACCTACTGCTTAGACGAGGAACTAGTGTG  368

Query 1629  GGCCTATGCTGATTGGGTCCTGCAGAAAAGTGAAGAGGTCGGAGTTCAGGTTTTCACCAAGAGACCTTTGGATG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  GGCCTATGCTGATTGGGTCCTGCAGAAAAGTGAAGAGGTCGGAGTTCAGGTTTTCACCAAGAGACCTTTGGATG  442

Query 1703  AACAGCAGAAGAACAGTTTTAATCCAGACGACATTATCAATTGCCTTAAAAAATACCCTAAAGCCCTTGTGAAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  AACAGCAGAAGAACAGTTTTAATCCAGACGACATTATCAATTGCCTTAAAAAATACCCTAAAGCCCTTGTGAAG  516

Query 1777  TATCTGGAACATCTTGTGATAGACAAGAGACTGCAGAAAGAAGAGTATCACACCCACTTAGCTGTGCTGTACCT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  TATCTGGAACATCTTGTGATAGACAAGAGACTGCAGAAAGAAGAGTATCACACCCACTTAGCTGTGCTGTACCT  590

Query 1851  GGAAGAGGTGCTGCTGCAGAGGGCCTCCGCCAGTGGCAAGGGTGCAGAGGCCACCGAGACGCAGGCCAAGCTGC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  GGAAGAGGTGCTGCTGCAGAGGGCCTCCGCCAGTGGCAAGGGTGCAGAGGCCACCGAGACGCAGGCCAAGCTGC  664

Query 1925  GGCGGCTGCTCCAGAAATCTGATTTATACCGAGTCCACTTTCTTCTCGAGAGGCTGCAGGGAGCTGGCCTGCCC  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  GGCGGCTGCTCCAGAAATCTGATTTATACCGAGTCCACTTTCTTCTCGAGAGGCTGCAGGGAGCTGGCCTGCCC  738

Query 1999  ATGGAGAGCGCCATCCTGCACGGGAAGCTGGGCGAGCATGAGAAGGCGCTGCATATCCTGGTGCACGAGCTGCA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  ATGGAGAGCGCCATCCTGCACGGGAAGCTGGGCGAGCATGAGAAGGCGCTGCATATCCTGGTGCACGAGCTGCA  812

Query 2073  GGACTTTGCAGCGGCCGAGGACTACTGCCTGTGGTGCTCCGAGGGCCGAGACCCACCCCACCGCCAGCAACTCT  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  GGACTTTGCAGCGGCCGAGGACTACTGCCTGTGGTGCTCCGAGGGCCGAGACCCACCCCACCGCCAGCAACTCT  886

Query 2147  TTCACACGCTGCTGGCCATCTACCTGCATGCTGGCCCCACTGCCCACGAGCTGGCCGTGGCTGCCGTGGACCTG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  TTCACACGCTGCTGGCCATCTACCTGCATGCTGGCCCCACTGCCCACGAGCTGGCCGTGGCTGCCGTGGACCTG  960

Query 2221  CTGAACCGCCACGCCACCGAATTTGATGCAGCCCAGGTGCTGCAGATGCTGCCTGACACCTGGTCAGTGCAGCT  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961  CTGAACCGCCACGCCACCGAATTTGATGCAGCCCAGGTGCTGCAGATGCTGCCTGACACCTGGTCAGTGCAGCT  1034

Query 2295  CCTCTGCCCATTCCTGATGGGGGCCATGAGGGACAGCATCCATGCCAGGAGGACCATGCAGGTGGCTCTCGGCC  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035  CCTCTGCCCATTCCTGATGGGGGCCATGAGGGACAGCATCCATGCCAGGAGGACCATGCAGGTGGCTCTCGGCC  1108

Query 2369  TGGCCAGGTCCGAAAACTTAATCTACACCTACGATAAGATGAAGTTGAAAGGAAGCTCAATCCAACTCTCAGAC  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  TGGCCAGGTCCGAAAACTTAATCTACACCTACGATAAGATGAAGTTGAAAGGAAGCTCAATCCAACTCTCAGAC  1182

Query 2443  AAAAAGCTTTGTCAGATATGCCAAAATCCCTTTTGTGAGCCTGTGTTTGTTAGATACCCAAATGGTGGTCTTGT  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183  AAAAAGCTTTGTCAGATATGCCAAAATCCCTTTTGTGAGCCTGTGTTTGTTAGATACCCAAATGGTGGTCTTGT  1256

Query 2517  GCACACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCATCCAGTCCTGGCACTCGGACT  2580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257  GCACACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCATCCAGTCCTGGCACTCGGACT  1320

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.