Nucleotide Global Alignment

Description

• Query: ccsbBroad304_07427
• Subject: XR_001751422.2
• Aligned Length: 2000
• Identities: 1308
• Gaps: 638

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTCTGCGCCTGCTCCACGTCACTAAACTCGCTACCGCCTGCTCCCCTCCAGAGACCGGGGGCCTTCCAGCAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTCGGACCCCCGAGCACAGAGACCGCCAAGCCAAAGGCGAGTAGCAATCCCTCGGTTCGGAAACGGCGAAAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAACCGCAAGGAGGCCACCACGTCGGGTGGGAGCTACGAAGTTGCCCGTTCCCGGTTACTTCCGGGCTTGCGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGACGACTGCTCTCAAAGGCCAAACTTAATGGATGGACGAGCAGCGCGCTACTGCAGCTTTCTTCCGCCTTAGG  296

Query    1  ----------------ATGAGGAGGCCCCTAAGCAAGTGCGGAATGGAGCCGGGGGGCGGAGATGCCAGCCTCA  58
                            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AAGGTGGCGGCCAGGGATGAGGAGGCCCCTAAGCAAGTGCGGAATGGAGCCGGGGGGCGGAGATGCCAGCCTCA  370

Query   59  CTTTGCATGGTCTCCAGAACCGCTCCCACGGCAAGATAAAGCTGCGAAAGAGAAAGTCTACCTTGTACTTCAAC  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTTTGCATGGTCTCCAGAACCGCTCCCACGGCAAGATAAAGCTGCGAAAGAGAAAGTCTACCTTGTACTTCAAC  444

Query  133  ACCCAGGAGAAGAGCGCCAGGCGCCGCGGGGATCTTCTTGGAGAAAATATTTATCTGCTCTTGTTTACCTTAGC  206
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct  445  ACCCAGGAGAAGAGCGCCAGGCGCCGCGGGGATCTTCTTGGAGAAAATATTTATCTGCTCTTGTTTACCATAGC  518

Query  207  TTTACGAATATTAAACTGCTTTTTAGTGCAGACAAGTTTTGTTCCAGATGAATACTGGCAGTCTCTTGAAGTTT  280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTACGAATATTAAACTGCTTTTTAGTGCAGACAAGTTTTGTTCCAGATGAATACTGGCAGTCTCTTGAAGTTT  592

Query  281  CACATCACATGGTTTTCAATTATGGTTATTTGACTTGGGAATGGACAGAGAGACTGAGGAGTTACACTTATCCC  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CACATCACATGGTTTTCAATTATGGTTATTTGACTTGGGAATGGACAGAGAGACTGAGGAGTTACACTTATCCC  666

Query  355  TTAATCTTTGCAAGCATTTACAAGATTCTTCATCTTTTAGGGAAAGATAGTGTTCAGTTGCTGATTTGGATTCC  428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTAATCTTTGCAAGCATTTACAAGATTCTTCATCTTTTAGGGAAAGATAGTGTTCAGTTGCTGATTTGGATTCC  740

Query  429  TAGACTTGCCCAAGCACTTCTGTCTGCTGTAGCAGATGTGAGACTTTACTCATTAATGAAGCAACTAGAAAATC  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAGACTTGCCCAAGCACTTCTGTCTGCTGTAGCAGATGTGAGACTTTACTCATTAATGAAGCAACTAGAAAATC  814

Query  503  AGGAAGTGGCAAGATGGGTGTTTTTTTGCCAGTTGTGCTCCTGGTTCACATGGTATTGCTGTACCAGAACCCTT  576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGGAAGTGGCAAGATGGGTGTTTTTTTGCCAGTTGTGCTCCTGGTTCACATGGTATTGCTGTACCAGAACCCTT  888

Query  577  ACAAACACCATGGAAACTGTTCTCACTATAATTGCTCTTTTCTACTATCCTTTGGAAGGTTCAAAGTCTATGAA  650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACAAACACCATGGAAACTGTTCTCACTATAATTGCTCTTTTCTACTATCCTTTGGAAGGTTCAAAGTCTATGAA  962

Query  651  CAGTGTCAAATACTCATCCCTGGTGGCACTTGCCTTCATAATTCGTCCCACAGCTGTCATTCTGTGGACACCTT  724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CAGTGTCAAATACTCATCCCTGGTGGCACTTGCCTTCATAATTCGTCCCACAGCTGTCATTCTGTGGACACCTT  1036

Query  725  TGCTCTTCAGACATTTCTGTCAAGAACCAAGAAAGCTTGATCTTATTCTACATCATTTTTTACCTGTAGGCTTT  798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCTCTTCAGACATTTCTGTCAAGAACCAAGAAAGCTTGATCTTATTCTACATCATTTTTTACCTGTAGGCTTT  1110

Query  799  GTTACTTTGAGTTTGTCTCTGATGATTGATCGTATTTTTTTTGGCCAATGGACTCTGGTTCAATTTAATTTTTT  872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTTACTTTGAGTTTGTCTCTGATGATTGATCGTATTTTTTTTGGCCAATGGACTCTGGTTCAATTTAATTTTTT  1184

Query  873  GAAATTTAACGTGCTGCAGAACTTGGGAACATTTTATGGTTCTCATCCATGGCACTGGTACTTCAGTCAAGGAT  946
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAAATTTAACGTGCTGCAGAACTGGGGAACATTTTATGGTTCTCATCCATGGCACTGGTACTTCAGTCAAGGAT  1258

Query  947  TTCCAGTTATCTTGGGTACTCACTTACCCTTCTTTATTCATGGCTGCTATCTAGCACCAAAGAGATACCGGATA  1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTCCAGTTATCTTGGGTACTCACTTACCCTTCTTTATTCATGGCTGCTATCTAGCACCAAAGAGATACCGGATA  1332

Query 1021  CTTTTGGTGACTGTGCTGTGGACACTGCTTGTTTATAGCATGTTGAGCCACAAAGAATTCAGGTTTATTTATCC  1094
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTTTTGGTGACTGTGCTGTGGACACTGCTTGTTTATAGCATGTTGAGCCACAAAGAATTCAGGTTTATTTATCC  1406

Query 1095  AGTTTTACCATTCTGTATGGTGTTCTGTGGATACTCATTAACCCACCTGAAAACATGGAAGAAACCAGCTCTAA  1168
            |||||||||||||||||||||||||||||       |||...|||.|              |..||...|||  
Sbjct 1407  AGTTTTACCATTCTGTATGGTGTTCTGTG-------ATTTTTCCAGC--------------ATTCCTCTTCT--  1457

Query 1169  GTTTCCTGTT--TTTATCAAATTTGTTCCTCGCCCTTTATACTGGTTTAGTTCATCAACGAGGTACTCTTGA--  1238
            ||.|||||||  ||||.|||.|            .||||.|              |||.||       ||||  
Sbjct 1458  GTGTCCTGTTGCTTTACCAAGT------------ATTTACA--------------CAAAGA-------TTGAGT  1498

Query 1239  TGTCATGAGTCAT-------ATTCAAAAAGTTTGTTACAACAATCCCAATAAATC-TTCAGCTTCAATATTTAT  1304
            |||| |||.||.|       |.||.|||||.|||                 |||| ||.||...|||.||    
Sbjct 1499  TGTC-TGAATCCTCATTGCCAGTCTAAAAGATTG-----------------AATCTTTAAGTGGCAAGAT----  1550

Query 1305  AATGATGCCTTGCCACTCTACTCCTTATTACA--GCCATGTTCACTGCCCACTTCCCATGAGATTTCTCCAGTG  1376
                   ||.||..||              ||  ||| |.|||||.|                |||.|      
Sbjct 1551  -------CCCTGTAAC--------------CAGGGCC-TATTCACAG----------------TTTAT------  1580

Query 1377  CCCGCCAGACCTGACTGGAAAAAGTCATTATCTTGATGAAGCAGATGTATTTTACCTAAATCCCTTAAACTGGT  1450
                       |||   ||.|||      ||..||||||.|                              |||
Sbjct 1581  -----------TGA---GATAAA------ATGCTGATGAGG------------------------------GGT  1604

Query 1451  CACATAGAGAG-----TTTCATGATGATGCATCATTGCCTACTCACTTGATCACCTTCAGCATTTTGGAAGAGG  1519
               |.||||||     |.|.|| |.|||.| |||||   .||.|||.|||..||          .|||||   |
Sbjct 1605  ---AAAGAGAGCCCCTTCTAAT-AGGATAC-TCATT---AACCCACCTGAAAAC----------ATGGAA---G  1657

Query 1520  AAA-------TAAGTGCTTTCCTAATTTCAAGCAATTATAAAAGAACTGCTGTTTTCTTCCACACTCACTTGCC  1586
            |||       ||||   ||||||..||        ||||.|||          |||.||||.|.          
Sbjct 1658  AAACCAGCTCTAAG---TTTCCTGTTT--------TTATCAAA----------TTTGTTCCTCG----------  1700

Query 1587  AGAGGGTCGAATTGGAAGTCACATATATGTCTATGAACGGAAGTTAAAAGGGAAATTCAACATGAAGATGAAAT  1660
                                                                                      
Sbjct 1701  --------------------------------------------------------------------------  1700

Query 1661  TC  1662
              
Sbjct 1701  --  1700