Nucleotide Global Alignment

Description

• Query: ccsbBroad304_07460
• Subject: XM_005247912.3
• Aligned Length: 1458
• Identities: 1100
• Gaps: 279

Alignment

Query    1  ---ATGAAGCCAACAG------GTACAGACCCA-AG----GATCTTATCT----ATAGCTGCTGAAGTTGCAAA  56
               ||||.| |.||||      .||||||.|.| ||    ||| ||| ||    ||||     ||||     ||
Sbjct    1  ATGATGATG-CTACAGAATATACTACAGATCAACAGTGGTGAT-TTA-CTCAGAATAG-----GAAG-----AA  61

Query   57  AAGCCCTGAGCAGAATGTCCCTGTTATACTGTTGAAGTTA----AAAGAAATAATAAACATCACACCTTTAGGA  126
            |||||||     |.|| ||..|.|||    |.||||||||    .|||                  ||||....
Sbjct   62  AAGCCCT-----GTAT-TCAATTTTA----GATGAAGTTATTTTCAAG------------------CTTTTTTC  107

Query  127  AGCTC--AG---AGTT-GAAGAA--AATCAAACAAGATATATATTGTT-ATG-----ATCTCATTCA--ATATT  184
            |.|||  ||   |||| .|||||  |.|...||||.|....||.|||| |||     |||.|| |||  |.|||
Sbjct  108  AACTCCTAGTCCAGTTATAAGAAGTACTGCTACAAAACTCCTACTGTTGATGGCTGAATCCCA-TCAGGAAATT  180

Query  185  GCCTCTTG---GTCCTCAGTCAAGATTATTCTCGAATCCAGGGTGGTTGGACTACAATTTCCCAGCTTACACAG  255
                 |||   .|.||.||.||| |.||         ||.|          ||||||      ||  .||.|||
Sbjct  181  -----TTGATTTTACTGAGACAA-AGTA---------CCTG----------CTACAA------AG--GACTCAG  221

Query  256  A----TATTAAGCCATTGCTGTGTGGGCTTGGAGCCAGGAGAAGATGCAGAG---GAATTTTACAATGAATTAC  322
            |    ||.|||                   |.|..|||||.|     |.|.|   |||||   ||.|.||..||
Sbjct  222  ACGTCTACTAA-------------------GTAAACAGGAAA-----CTGGGACTGAATT---CAGTCAAGAAC  268

Query  323  TTCCATCAGCTGCAGAAAATTTTCTAGTTTTGGGGAGACAATTA----CAAACATGTTTTATCAATGCAGCTAA  392
            ||..| |||||                |.|||    |.|..|||    ||   |||.|.|||||          
Sbjct  269  TTAGA-CAGCT----------------TGTTG----GCCTTTTAAGCCCA---ATGGTCTATCA----------  308

Query  393  GGCTGAAGAAAAAGA--TGAATTACTACACTTTTTC------CAAATTGTGACTGATTCTCTCTTCTGGCTTTT  458
               .||||.|.||||  .|||  ||||||     ||      ||     ||..||||||      ..|.||.||
Sbjct  309  ---GGAAGTAGAAGAGCAGAA--ACTACA-----TCAAGCAGCA-----TGCTTGATTC------AAGCCTATT  361

Query  459  GGGAGGCCATGTTGAACTTATTCAGAATGTACTACAAAGTGATCATTTCTTACATTTACTGCAAGCTGACAATG  532
            ||.|||    |||       |||||     ||.|.||||.||       |||.|       .|||||       
Sbjct  362  GGAAGG----GTT-------TTCAG-----ACAAGAAAGAGA-------TTAAA-------GAAGCT-------  398

Query  533  TCCAAATAGGATCTGCAGTCATGATGATGCTACAGAATATATTACAGATCA---ACAGATCCAAACGATCAAAG  603
            |||       ||||||.||.||     ||||          ||.||||..|   .|||||||||||||||||||
Sbjct  399  TCC-------ATCTGCTGTGAT-----TGCT----------TTGCAGAGGAGTTTCAGATCCAAACGATCAAAG  450

Query  604  ATGTTGCTGGAGATAAATAGGCAGAAGGAAGAAGAGGACCTCAAATTACAATTGCAACTTCAAAGACAGAGAGC  677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  ATGTTGCTGGAGATAAATAGGCAGAAGGAAGAAGAGGACCTCAAATTACAATTGCAACTTCAAAGACAGAGAGC  524

Query  678  CATGAGACTTTCCCGAGAATTGCAGCTGAGTATGCTCGAAATAGTTCATCCAGGTCAGGTGGAGAAACACTATC  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  525  CATGAGACTTTCCCGAGAATTGCAGCTGAGTATGCTCGAAATAGTTCATCCAGGTCAGGTGGAGAAACACTATC  598

Query  752  GGGAAATGGAAGAGAAATCAGCACTGATTATCCAGAAACATTGGAGAGGGTACAGGGAAAGGAAAAATTTTCAC  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  GGGAAATGGAAGAGAAATCAGCACTGATTATCCAGAAACATTGGAGAGGGTACAGGGAAAGGAAAAATTTTCAC  672

Query  826  CAACAGAGGCAGTCTCTCATAGAGTATAAAGCAGCTGTCACACTTCAAAGAGCAGCGCTTAAATTCCTAGCGAA  899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  673  CAACAGAGGCAGTCTCTCATAGAGTATAAAGCAGCTGTCACACTTCAAAGAGCAGCGCTTAAATTCCTAGCGAA  746

Query  900  GTACCGTAAGAAAAAGAAACTATTTGCTCCTTGGCGAGGACTCCAAGAACTCACTGATGCACGCCGAGTTGAAC  973
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  747  GTGCCGTAAGAAAAAGAAACTATTTGCTCCTTGGCGAGGACTCCAAGAACTCACTGATGCACGCCGAGTTGAAC  820

Query  974  TGAAGAAACGAGTGGATGACTATGTCAGAAGACATTTGGGCTCTCCAATGTCAGATGTGGTCAGTAGGGAGCTC  1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  821  TGAAGAAACGAGTGGATGACTATGTCAGAAGACATTTGGGCTCTCCAATGTCAGATGTGGTCAGTAGGGAGCTC  894

Query 1048  CATGCCCAAGCTCAAGAACGACTGCAACACTACTTTATGGGCAGGGCCCTAGAAGAGCGAGCCCAGCAGCACAG  1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  895  CATGCCCAAGCTCAAGAACGACTGCAACACTACTTTATGGGCAGGGCCCTAGAAGAGCGAGCCCAGCAGCACAG  968

Query 1122  AGAAGCTCTGATAGCACAGATCAGCACCAACGTTGAACAGCTAATGAAGGCACCAAGTCTGAAGGAGGCAGAAG  1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  969  AGAAGCTCTGATAGCACAGATCAGCACCAACGTTGAACAGCTAATGAAGGCACCAAGTCTGAAGGAGGCAGAAG  1042

Query 1196  GGAAAGAACCTGAGCTCTTCCTAAGTAGATCCAGGCCTGTGGCAGCCAAGGCCAAGCAGGCCCATCTCACAACC  1269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043  GGAAAGAACCTGAGCTCTTCCTAAGTAGATCCAGGCCTGTGGCAGCCAAGGCCAAGCAGGCCCATCTCACAACC  1116

Query 1270  CTGAAGCACATACAAGCACCCTGGTGGAAGAAGCTTGGAGAAGAATCTGGAGATGAGATTGATGTTCCAAAGGA  1343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117  CTGAAGCACATACAAGCACCCTGGTGGAAGAAGCTTGGAGAAGAATCTGGAGATGAGATTGATGTTCCAAAGGA  1190

Query 1344  TGAGCTTAGTATAGAATTAGAAAATTTATTCATTGGTGGAACCAAACCACCT  1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191  TGAGCTTAGTATAGAATTAGAAAATTTATTCATTGGTGGAACCAAACCACCT  1242