Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07496
- Subject:
- XR_001744894.2
- Aligned Length:
- 3724
- Identities:
- 2067
- Gaps:
- 1656
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGATGCAAAATGTGTCTCTGGCCAGCAGGAGGAAGGAAGAGGAAGTGAGAGCAGCGGCAGCCGGCGGTGCAGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCGGCCGACCCAGAGTGTAAGTGCGTGTGCTGGGGCGAGCGGGAGCGGGCGAGGATGGGCACAGGATAGAGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGAGCCACCCACGCCGCCGCGGCCCCACGCTGGGCGACAGAGCCTCCAGTTCCCCTTCAATGGTGGCGGGTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGAGCTCTGATCGCCGGGAACCCTTGCCGCTGCTGTCCTGCGACCCCAAGCAGGTATAGACACGTGTGGCCGT 296
Query 1 -----------------------------------------------------ATGCCGCCACCCGCGGACATC 21
|||||||||||||||||||||
Sbjct 297 TTACGCTGTAGGATCCTCATTCCCACTGGCTTTGAACATTTTGGGGACTTACAATGCCGCCACCCGCGGACATC 370
Query 22 GTCAAGGTGGCCATAGAATGGCCGGGCGCCTACCCCAAACTCATGGAAATTGATCAGAAAAAACCACTGTCTGC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTCAAGGTGGCCATAGAATGGCCGGGCGCCTACCCCAAACTCATGGAAATTGATCAGAAAAAACCACTGTCTGC 444
Query 96 AATAATAAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGAATATTTTGCACTCCAGCATGCCGATAGTT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATAATAAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGAATATTTTGCACTCCAGCATGCCGATAGTT 518
Query 170 CAAACTTCTATATCACAGAAAAGAACCGCAATGAGATAAAAAATGGCACTATCCTTCGATTAACCACATCTCCA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAACTTCTATATCACAGAAAAGAACCGCAATGAGATAAAAAATGGCACTATCCTTCGATTAACCACATCTCCA 592
Query 244 GCTCAGAACGCCCAGCAGCTCCATGAACGAATCCAGTCCTCGAGTATGGATGCCAAGCTGGAAGCCCTGAAGGA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTCAGAACGCCCAGCAGCTCCATGAACGAATCCAGTCCTCGAGTATGGATGCCAAGCTGGAAGCCCTGAAGGA 666
Query 318 CTTGGCCAGCCTCTCCCGGGATGTCACGTTTGCCCAGGAGTTTATAAACCTGGACGGTATCTCTCTCCTCACGC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTTGGCCAGCCTCTCCCGGGATGTCACGTTTGCCCAGGAGTTTATAAACCTGGACGGTATCTCTCTCCTCACGC 740
Query 392 AGATGGTAGAGAGCGGCACTGAGCGATACCAGAAATTGCAGAAGATCATGAAGCCTTGCTTTGGAGACATGCTG 465
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGATGGTGGAGAGCGGCACTGAGCGATACCAGAAATTGCAGAAGATCATGAAGCCTTGCTTTGGAGACATGCTG 814
Query 466 TCCTTCACCCTGACGGCCTTCGTTGAGCTGATGGACCATGGCATAGTGTCCTGGGATACATTTTCGGTGGCGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCCTTCACCCTGACGGCCTTCGTTGAGCTGATGGACCATGGCATAGTGTCCTGGGATACATTTTCGGTGGCGTT 888
Query 540 CATTAAGAAGATAGCAAGTTTTGTGAACAAGTCAGCCATAGACATCTCGATCCTGCAGCGGTCCTTGGCCATTT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CATTAAGAAGATAGCAAGTTTTGTGAACAAGTCAGCCATAGACATCTCGATCCTGCAGCGGTCCTTGGCCATTT 962
Query 614 TGGAGTCGATGGTGCTCAATAGCCATGACCTCTACCAGAAAGTGGCGCAGGAGATCACCATCGGCCAGCTCATT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGAGTCGATGGTGCTCAATAGCCATGACCTCTACCAGAAAGTGGCGCAGGAGATCACCATCGGCCAGCTCATT 1036
Query 688 CCACACCTGCAAGGGTCAGATCAAGAAATCCAAACCTATACTATTGCAGTGATTAATGCGCTTTTCCTGAAGGC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCACACCTGCAAGGGTCAGATCAAGAAATCCAAACCTATACTATTGCAGTGATTAATGCGCTTTTCCTGAAGGC 1110
Query 762 TCCTGATGAGAGGAGGCAGGAGATGGCGAATATTTTGGCTCAGAAGCAACTGCGTTCCATCATTTTAACACATG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCCTGATGAGAGGAGGCAGGAGATGGCGAATATTTTGGCTCAGAAGCAACTGCGTTCCATCATTTTAACACATG 1184
Query 836 TCATCCGAGCCCAGCGGGCCATCAACAATGAGATGGCGCACCAGCTGTATGTTCTACAAGTGCTCACCTTTAAC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCATCCGAGCCCAGCGGGCCATCAACAATGAGATGGCGCACCAGCTGTATGTTCTACAAGTGCTCACCTTTAAC 1258
Query 910 CTCCTGGAAGACAGGATGATGACCAAAATGGACCCCCAGGACCAGGCTCAGAGGGACATCATATTTGAACTTCG 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTCCTGGAAGACAGGATGATGACCAAAATGGACCCCCAGGACCAGGCTCAGAGGGACATCATATTTGAACTTCG 1332
Query 984 AAGAATTGCTTTTGATGCTGAGTCTGAACCTAACAACAGCAGTGGCAGCATGGAGAAACGCAAGTCCATGTACA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGAATTGCTTTTGATGCTGAGTCTGAACCTAACAACAGCAGTGGCAGCATGGAGAAACGCAAGTCCATGTACA 1406
Query 1058 CGCGAGATTATAAGAAGCTTGGGTTCATTAATCATGTCAACCCTGCCATGGACTTCACGCAGACTCCACCTGGG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CGCGAGATTATAAGAAGCTTGGGTTCATTAATCATGTCAACCCTGCCATGGACTTCACGCAGACTCCACCTGGG 1480
Query 1132 ATGTTGGCTCTGGACAACATGCTGTACTTTGCCAAGCACCACCAAGATGCCTACATCCGGATTGTGCTTGAGAA 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ATGTTGGCTCTGGACAACATGCTGTACTTTGCCAAGCACCACCAAGATGCCTACATCCGGATTGTGCTTGAGAA 1554
Query 1206 CAGTAGTCGAGAAGACAAGCATGAATGTCCCTTTGGCCGCAGTAGTATAGAGCTGACCAAGATGCTATGTGAGA 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGTAGTCGAGAAGACAAGCATGAATGTCCCTTTGGCCGCAGTAGTATAGAGCTGACCAAGATGCTATGTGAGA 1628
Query 1280 TCTTGAAAGTGGGCGAGTTGCCTAGTGAGACCTGCAACGACTTCCACCCGATGTTCTTCACCCACGACAGATCC 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCTTGAAAGTGGGCGAGTTGCCTAGTGAGACCTGCAACGACTTCCACCCGATGTTCTTCACCCACGACAGATCC 1702
Query 1354 TTTGAGGAGTTTTTCTGCATCTGTATCCAGCTCCTGAACAAGACATGGAAGGAAATGAGGGCAACTTCTGAAGA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTTGAGGAGTTTTTCTGCATCTGTATCCAGCTCCTGAACAAGACATGGAAGGAAATGAGGGCAACTTCTGAAGA 1776
Query 1428 CTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCACTTACAACCAAGCCTAGCTCCCTGGACC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCACTTACAACCAAGCCTAGCTCCCTGGACC 1850
Query 1502 AGTTCAAGAGCAAACTGCAGAACCTGAGCTACACTGAGATCCTGAAAATCCGCCAGTCCGAGAGGATGAACCAG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AGTTCAAGAGCAAACTGCAGAACCTGAGCTACACTGAGATCCTGAAAATCCGCCAGTCCGAGAGGATGAACCAG 1924
Query 1576 GAAGATTTCCAGTCCCGCCCGATTTTGGAACTAAAGGAGAAGATTCAGCCAGAAATCTTAGAGCTGATCAAACA 1649
||||||||||||||||||||||||||
Sbjct 1925 GAAGATTTCCAGTCCCGCCCGATTTT------------------------------------------------ 1950
Query 1650 GCAACGCCTGAACCGCCTTGTGGAAGGGACCTGCTTTAGGAAACTCAATGCCCGGCGGAGGCAAGACAAGTTTT 1723
|||||||||
Sbjct 1951 -----------------------------------------------------------------ACAAGTTTT 1959
Query 1724 GGTATTGTCGGCTTTCGCCAAATCACAAAGTCCTGCATTACGGAGACTTAGAAGAGAGTCCTCAGGGAGAAGTG 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GGTATTGTCGGCTTTCGCCAAATCACAAAGTCCTGCATTACGGAGACTTAGAAGAGAGTCCTCAGGGAGAAGTG 2033
Query 1798 CCCCACGATTCCTTGCAGGACAAACTGCCGGTGGCAGATATCAAAGCCGTGGTGACGGGAAAGGACTGCCCTCA 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 CCCCACGATTCCTTGCAGGACAAACTGCCGGTGGCAGATATCAAAGCCGTGGTGACGGGAAAGGACTGCCCTCA 2107
Query 1872 TATGAAAGAGAAAGGTGCCCTTAAACAAAACAAGGAGGTGCTTGAACTCGCTTTCTCCATCTTGTATGACTCAA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TATGAAAGAGAAAGGTGCCCTTAAACAAAACAAGGAGGTGCTTGAACTCGCTTTCTCCATCTTGTATGACTCAA 2181
Query 1946 ACTGCCAACTGAACTTCATCGCTCCTGACAAGCATGAGTACTGTATCTGGACGGATGGACTGAATGCGCTACTC 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 ACTGCCAACTGAACTTCATCGCTCCTGACAAGCATGAGTACTGTATCTGGACGGATGGACTGAATGCGCTACTC 2255
Query 2020 GGGAAGGACATGATGAGCGACCTGACGCGGAATGACCTGGACACCCTGCTCAGCATGGAAATCAAGCTCCGCCT 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GGGAAGGACATGATGAGCGACCTGACGCGGAATGACCTGGACACCCTGCTCAGCATGGAAATCAAGCTCCGCCT 2329
Query 2094 CCTGGACCTGGAAAACATCCAGATCCCTGACGCACCTCCGCCGATTCCCAAGGAGCCCAGCAACTATGACTTCG 2167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CCTGGACCTGGAAAACATCCAGATCCCTGACGCACCTCCGCCGATTCCCAAGGAGCCCAGCAACTATGACTTCG 2403
Query 2168 TCTATGACTGTAAC------------------------------------------------------------ 2181
||||||||||||||
Sbjct 2404 TCTATGACTGTAACTGAAGTGGCCGGGCCCAGACATGCCCCTTCCAAAACTGGAACACCTAGCTAACAGGAGAG 2477
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2478 AGGAATGAAAACACACCCACGCCTTGGAACCGTCCTTTGGTAAAGGGAAGCTGTGGGTCCACATTCCCTTCAGC 2551
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2552 ATCACCTCTAGCCCTGGCAACTTTCAGCCCCTAGCTGGCATCTTGCTCACCGCCCTGATTCTGTTCCTCGGCTC 2625
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2626 CACTGCTTCAGGTCACTTCCCATGGCTGCAGTCCACTGGTGGGACAAGAGCAAAGCCCACTGCCAGTAAGAAGG 2699
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2700 CCAAAGGGCCCTTCCATCCTAGCCCTCTGCAGGCATGCCCTTCCTTCCCTTGGGCAGGAAAGCCAGCAGCCCCA 2773
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2774 GACTGCCCAAAAACTTGCCCACCAGACCAAGGGCAGTGCCCCAAGGCCCCTGTCTGGAGGAAATGGCCTAGCTA 2847
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2848 TTTGATGAGAAGACCAAACCCCACATCCTCCTTTCCCCTCTCTCTAGAATCATCTCGCACCACCAGTTACACTT 2921
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2922 GAATTAAGATCTGCGCTCAAATCTCCTCCCACCTCTCTCCCTGCTTTTGCCTTGCTCTGTTCCTCTTTGGTCCC 2995
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 2996 AAGAGCAGCAGCCGCAGCCTCCTCGTGATCCTCCCTAGCATAAATTTCCCAAACAGTCCACAGGTCCCATGCCC 3069
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3070 ACTTTGCGTCTGCACTGTGATCGTGACAAATCTTCCCTCCTCACCAGCTAGTCTGGGGTTTCCTCTCCCTGCCC 3143
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3144 CAGGCCAGAACTGCCTTCTTCATTTCCACCCACGCTCCCAGCCTCTTAGCTGAAAGCACAAATGGTGAAATCAG 3217
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3218 TAGTCTCGCTCCATCTCTAATAGACTAAACCTAAATGCCTCTAGGACGGACTGTTGCTATCCAAGCGTTTGGTG 3291
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3292 TTACCTTCTCCTGGGAGGTCCTGCTGCAACTCAAGTTCCACAGGATGGTCAAGCTGTCAGACATCCAAGTTTAC 3365
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3366 ATCATTGTAATTATTACTGGTATTTACAATTTGCAAGAGTTTTGGGTTAGTTTTTTTTTTTTTTTTTGCTTTGT 3439
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3440 TTTTGTACAAAAGAGTCTAACATTTTTTGCCAAACAGATATATATTTAATGAAAAGAAGAGATACATAAATGTG 3513
Query 2182 -------------------------------------------------------------------------- 2181
Sbjct 3514 TGAATTTCCAGTTTTTTTTTAATTATTTTAATCCCAAACATCTTCCTGAAAATAACATTCCCTTAAACATGCTG 3587
Query 2182 ------------------------ 2181
Sbjct 3588 TGGAATAAAATGGATTGTGATGAT 3611