Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07510
Subject:
XR_001748936.2
Aligned Length:
3816
Identities:
2331
Gaps:
1484

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGAGACACTAGTCCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCGGCCGGCGGGGCTCGCGCAACCTCCCTCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGCCGGGCTTAACAGCCCCGTCCGCCGCTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAACCGCTGCCGCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCG  444

Query    1  ---------------ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGAGGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  518

Query   60  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  592

Query  134  CCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTT  666

Query  208  TCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAACAA  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAACAA  740

Query  282  GATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGG  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGG  814

Query  356  TAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGTCCTAAGAAGATCAACCTGAACCACTTG  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGTCCTAAGAAGATCAACCTGAACCACTTG  888

Query  430  TTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGGCAGTGGACATGGTAGCTGGGGAAAGAG  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGGCAGTGGACATGGTAGCTGGGGAAAGAG  962

Query  504  GAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGGCCAACTGCCAATTTGTGGTGTCTGAAG  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGGCCAACTGCCAATTTGTGGTGTCTGAAG  1036

Query  578  ACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAACTGGGACTTTGTGGAACAAGTGCGCATT  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAACTGGGACTTTGTGGAACAAGTGCGCATT  1110

Query  652  TGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTGCAGCCAAGATAACCCGTTGTGGACA  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTGCAGCCAAGATAACCCGTTGTGGACA  1184

Query  726  CATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGAAGACGTGGAGTAAATGTCCCATCTGTT  799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGAAGACGTGGAGTAAATGTCCCATCTGTT  1258

Query  800  ACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAGTCACATCAGTATGTTGTTGGTGATACC  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAGTCACATCAGTATGTTGTTGGTGATACC  1332

Query  874  ATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGA  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGA  1406

Query  948  CCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGTTTCTGCTGGCCTCTAAGGAGCAGGTGC  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1407  CCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGTTGCTGCTGGCCTCTAAGGAGCAGGTGC  1480

Query 1022  TGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCCGAGTCC  1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCCGAGTCC  1554

Query 1096  TGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGCTCTGTCGGGATTGGCCGGAAGCAGAAG  1169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGCTCTGTCGGGATTGGCCGGAAGCAGAAG  1628

Query 1170  GGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGGCTCCCTTGGCGAAGGAGTCTGTTTTTC  1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGGCTCCCTTGGCGAAGGAGTCTGTTTTTC  1702

Query 1244  AACCCAGGAAGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGACACT  1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AACCCAGGAAGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGACACT  1776

Query 1318  CCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGTGTCTGAACCAGAGCCTGAGGGGTTGCC  1391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGTGTCTGAACCAGAGCCTGAGGGGTTGCC  1850

Query 1392  AGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGGGGACCATTTGCACTGAGTCCAGCCAGC  1465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGGGGACCATTTGCACTGAGTCCAGCCAGC  1924

Query 1466  AGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAGCGGAAGAT  1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAGCGGAAGAT  1998

Query 1540  GGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCGGGAGTACGGCAGCCTGGAGAGGAGCCC  1613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCGGGAGTACGGCAGCCTGGAGAGGAGCCC  2072

Query 1614  CGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGTCTGAGGATGTTCGACAGCGTCACAGAT  1687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGTCTGAGGATGTTCGACAGCGTCACAGAT  2146

Query 1688  ATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTGGCTTTGCAACCTCCTGTGGTCTCTAAG  1761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  ATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTGGCTTTGCAACCTCCTGTGGTCTCTAAG  2220

Query 1762  GAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCAGCGCCAAAAGAAGGCTCGGGAGGAACG  1835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCAGCGCCAAAAGAAGGCTCGGGAGGAACG  2294

Query 1836  CCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCAAGTACCCAGAAGTCCACATTCCCCTCG  1909
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCAAGTACCCAGAAGTCCACATTCCCCTCG  2368

Query 1910  AGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCTGATTCTGCTTTGGGTCCCACCAGCACC  1983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCTGATTCTGCTTTGGGTCCCACCAGCACC  2442

Query 1984  GAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGGTTCCCATGCAGACTTTCTGCTGACCCC  2057
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct 2443  GAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGGTTCCCATG-------------------  2497

Query 2058  TCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGCGTTGGGAGTCTGGAAGAAGACTCTCCCTTCCCTT  2131
                                                                                      
Sbjct 2498  --------------------------------------------------------------------------  2497

Query 2132  CCTTTGCCCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGATGAG  2205
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498  --------CAGATGCTGAGGGTTGGAAAAGCAAAAGCAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGATGAG  2563

Query 2206  AACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGGAGAGTGATAATTCAGACCGTGTTCCTGTGCCCAG  2279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2564  AACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGGAGAGTGATAATTCAGACCGTGTTCCTGTGCCCAG  2637

Query 2280  TTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTCATGAAACTGGACACACCAGCTACTTCAGATCCCC  2353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2638  TTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTCATGAAACTGGACACACCAGCTACTTCAGATCCCC  2711

Query 2354  TCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAAACAGAAGCTCCTGTTCAGCACCTCAGTCGTCCAC  2427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2712  TCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAAACAGAAGCTCCTGTTCAGCACCTCAGTCGTCCAC  2785

Query 2428  ACCAAG--------------------------------------------------------------------  2433
            ||||||                                                                    
Sbjct 2786  ACCAAGTGACACTACTGGCCCAGGCTACCTTCTCCATCTGGTTTTTGTTTTTGTTTTTTTTTCCCCCATGCTTT  2859

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 2860  TGTTTGGCTGCTGTAATTTTTAAGTATTTGAGTTTGAACAGATTAGCTCTGGGGGGAGGGGGTTTCCACAATGT  2933

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 2934  GAGGGGGAACCAAGAAAATTTTAAATACAGTGTATTTTCCAGCTTCCTGTCTTTACACCAAAATAAAGTATTGA  3007

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3008  CACAAGAGATCTCTTCCTGCCAAGGTTTTTAGTTCATTGCCAGTTTAGTCTTTTTGACCCATGTGTAATTAATT  3081

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3082  TTTCTCAACCCAAAGTAAGATTGAGTCCCCTTTGAGATGCATTAGAGCAGTCCAACCCAGAATGGCACACACTG  3155

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3156  CTCTGCTGTAGCATCATGTCAGGGCTTCCTGGACTCAGTACACCTCTCAGTTTGTCTTTTAAAAAACAGCTGAA  3229

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3230  TCTTTACTACCTATTTAGTTCTCCTTGTTAAAGAAACAGGGGTGGGAATAAAATGGATTTAGGACACCCAGTTT  3303

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3304  GAATTGCAGTTTTTTTTTTTCTGACACATGGCCAGGCTGTGGTGCCAGCTTAATGGAGTAGGCTGTCCTTGGCA  3377

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3378  CTTGCATGTGTGAAAGGAGGGTTTTGCCTCTTCTTGAGCATGGCTTGAGTTGGTAAGGAAAGCTGTAACTCACG  3451

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3452  AAGCCCTGAGACCTGCTACCCCTAAGATCGAGCTTGTTTTCAGTGACTGGCTTGAGTCATAGGAGGAGGAGTCT  3525

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3526  GGTACAGCTGCAGGAGAGCAGGGCCATCTGAAGCGGTAGCATTGCCACCATCTCCCTCTCATCTAGAGCAGTTT  3599

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3600  TCTTATGCCTTGGTTTGAGCTGAATTTGATGTGAATTCTTTTGCTGCTTAATAAAGTGACCTCTAGGTGCATTA  3673

Query 2434  ------------------------------------------  2433
                                                      
Sbjct 3674  GAATGCGAAGGCAAATAGTTGCAATAAATCACCTGCACAAGC  3715

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