Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07540
Subject:
NR_027280.2
Aligned Length:
2606
Identities:
1037
Gaps:
1568

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTCCGGGCGTGCTGCCGGCGGCGGTAGGTGGCGCGCGGGTCCGGCGGGCGGTTGGCTTGAGCGGGACCGGAGC  74

Query    1  ----------------------ATGGTGGAGAAGGAGGAGGCTGGCGGCGGCATTAGCGAGGAGGAGGCGGCAC  52
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGAGGCAGGAAGAGCCGGCGCCATGGTGGAGAAGGAGGAGGCTGGCGGCGGCATTAGCGAGGAGGAGGCGGCAC  148

Query   53  AGTATGACCGGCAGATCCGCCTGTGGGGACTGGAGGCCCAGAAAC-----------------------------  97
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct  149  AGTATGACCGGCAGATCCGCCTGTGGGGACTGGAGGCCCAGAAACGGTCAGGGCCGGCGCGGCTTGAGGCCGCT  222

Query   98  -------------------------------------------------------GGCTGCGGGCCTCTCGGGT  116
                                                                   |||||||||||||||||||
Sbjct  223  AGGGTCTGGAGGGGGCGTCTATTCTGAGGCGTTTGCGGCCCGGAAGGAGCGGGAAGGCTGCGGGCCTCTCGGGT  296

Query  117  GCTTCTTGTCGGCTTGAAAGGACTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGTGAAAGGACTGA  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCTTCTTGTCGGCTTGAAAGGACTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGTGAAAGGACTGA  370

Query  191  CCATGCTGGATCACGAACAGGTAACTCCAGAAGATCCCGGAGCTCAGTTCTTGATTCGTACTGGGTCTGTTGGC  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCATGCTGGATCACGAACAGGTAACTCCAGAAGATCCCGGAGCTCAGTTCTTGATTCGTACTGGGTCTGTTGGC  444

Query  265  CGAAATAGGGCTGAAGCCTCTTTGGAGCGAGCTCAGAATCTCAACCCCATGGTGGATGTGAAGGTGGACACTGA  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGAAATAGGGCTGAAGCCTCTTTGGAGCGAGCTCAGAATCTCAACCCCATGGTGGATGTGAAGGTGGACACTGA  518

Query  339  GGATATAGAGAAGAAACCAGAGTCATTTTTCACTCAATTCGATGCTGTGTGTCTGACTTGCTGCTCCAGGGATG  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGATATAGAGAAGAAACCAGAGTCATTTTTCACTCAATTCGATGCTGTGTGTCTGACTTGCTGCTCCAGGGATG  592

Query  413  TCATAGTTAAAGTTGACCAGATCTGTCACAAAAATAGCATCAAGTTCTTTACAGGAGATGTTTTTGGCTACCAT  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCATAGTTAAAGTTGACCAGATCTGTCACAAAAATAGCATCAAGTTCTTTACAGGAGATGTTTTTGGCTACCAT  666

Query  487  GGATACACATTTGCCAATCTAGGAGAGCATGAGTTTGTAGAGGAGAAAACTAAAGTTGCCAAAGTTAGCCAAGG  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGATACACATTTGCCAATCTAGGAGAGCATGAGTTTGTAGAGGAGAAAACTAAAGTTGCCAAAGTTAGCCAAGG  740

Query  561  AGTAGAAGATGGGCCCGACACCAAGAGAGCAAAACTTGATTCTTCTGAGACAACGATGGTCAAAAAGAAGGTGG  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTAGAAGATGGGCCCGACACCAAGAGAGCAAAACTTGATTCTTCTGAGACAACGATGGTCAAAAAGAAGGTGG  814

Query  635  TCTTCTGCCCTGTTAAAGAAGCCCTGGAGGTGGACTGGAGCAGTGAGAAAGCAAAGGCTGCTCTGAAGCGCACG  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTTCTGCCCTGTTAAAGAAGCCCTGGAGGTGGACTGGAGCAGTGAGAAAGCAAAGGCTGCTCTGAAGCGCACG  888

Query  709  ACCTCCGACTACTTTCTCCTTCAAGTGCTCTTAAAGTTCCGTACAGATAAAGGAAGAGATCCCAGTTCTGATAC  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACCTCCGACTACTTTCTCCTTCAAGTGCTCTTAAAGTTCCGTACAGATAAAGGAAGAGATCCCAGTTCTGATAC  962

Query  783  ATATGAGGAAGATTCTGAGTTGTTGCTCCAGATACGAAATGATGTGCTTGACTCACTGGGTATTAGTCCTGACC  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATATGAGGAAGATTCTGAGTTGTTGCTCCAGATACGAAATGATGTGCTTGACTCACTGGGTATTAGTCCTGACC  1036

Query  857  TGCTTCCTGAGGACTTTGTCAGGTACTGCTTCTCCGAGATGGCCCCAGTGTGTGCGGTGGTTGGAGGGATTTTG  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCTTCCTGAGGACTTTGTCAGGTACTGCTTCTCCGAGATGGCCCCAGTGTGTGCGGTGGTTGGAGGGATTTTG  1110

Query  931  GCACAGGAAATTGTGAAGGCCCTGTCTCAGCGGGACCCTCCTCACAACAACTTCTTCTTCTTCGATGGCATGAA  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GCACAGGAAATTGTGAAGGCCCTGTCTCAGCGGGACCCTCCTCACAACAACTTCTTCTTCTTCGATGGCATGAA  1184

Query 1005  GGGGAATGGGATTGTGGAGTGCCTTGACCCCAAG----------------------------------------  1038
            ||||||||||||||||||||||||||.|||||||                                        
Sbjct 1185  GGGGAATGGGATTGTGGAGTGCCTTGGCCCCAAGTGAACTCAAGATTTGGCAGCCCCAGAGATGCCAACTGCAG  1258

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1259  CATGCCCACCTGTATTCCCTGTCCCCTTCCTTCATGAAGGCATCTCCAGGCAAGGAAAACTGAAGTCATTGGCC  1332

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1333  CGATACAAAACATTTCCTGCAACGAAGGAGGTGGTGCCGACGTGCTGCTTCCCATCACCAGCAGCTGCTCGACA  1406

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1407  AGGGGCGCAGGGTGGCTGTCTTTGTTCCAGCACTGTTCAGGCTGCCTGTCATCCCGGGCCTGCCAGCTCCCCTG  1480

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1481  AGTGATGAGCACTTCCAAGCACCCCTCTGCCCTTTCTCTGTCCTTATGCTGTCCCGGCCTCGCCAGCCCTCTGG  1554

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1555  GGCATTGTGGGAGATGCCTGCCAGGAATGAGCAAGCTCTGTTGCTCGGGAGCCTCTTGTCACCTTCTTGGACTT  1628

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1629  ATTCCCCACCTGATACCTTATAGAGAAAAGTGTGAATTCAGGTGGAGAGTAGGCCCAGGCCCCATGAGGCACCA  1702

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1703  GTGGAAGCACAGCTCCAAGTTCAGACAGGTGCCCTTAGAGAGGAAAACCATGACAGGCAAATGCATTTCCTCTG  1776

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1777  GAGTTTGAGACCCTGACAAACAACAGGTGGCATCTGGTGTGCTGTTCTTGAGTTTTCGTTTAGGATTAGTTGAG  1850

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1851  TTCCAGCTGGGTTTTGGGAGAAAGGAGATGCTACCAAGTCTTGGATGTTAGGGCGAGACCCTGCAAGTTGAGTA  1924

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1925  TTAGAGAGCTTGTCTTTCAAGGCAGGTTCCTGGGGCTTCAGGGCTAGGAGGGAGGAGCCTGCCCTTTTAACAGA  1998

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1999  ACCCCAGTCACATGCGGCTCAAGTCACTCAGAGGCTGTTGCATTTCAGGGCTATGTTGGTCCTTTGTTTACCTC  2072

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2073  CTAAACCACAGCTGTTTGTGTTTCACATATGTTGTGAATTTTCCTTGGTTCTTTTTAAAGGAATGATAATAAAG  2146

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2147  TTACTTGCTTTAGGATTTGCTTGTTTTTCTTCCACTTCAGAAGCTTCTGAGAGGGAATGGGATGATCCTACCAG  2220

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2221  TTGCCTTTTCAGACCTGAGGCTCTAACTCAAGAGATTCCTCCTCTCCCTCACCATTCCTGCCACCATTTTTTCT  2294

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2295  GGGTGATGCAGCAAGAGTTAAATTGTTCACATTCTAGAATGTGTAGAAGCTTCTGGCTCCAGTTGTCTAATGGA  2368

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2369  TAATTCAGCTAAATAGTGGCTATTTTCAGTGGCAAGAATTATAATAATAAAGGGAAGTCAAAAGTGATGCTTCA  2442

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2443  TATGCCCCAAGTGCCACAGCCGCTACGGGTCAGAGCTTTTATTGGAAGACCAGGTTTGCCTTGATGCAGCCAAA  2516

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 2517  GTGCGTTCCAGTTCACCCCACTCTTGCTTGTGTTTCTTCTTTATGTAAATTGTGTGATGTTTCAATAAATCAGT  2590

Query 1039  ----------------  1038
                            
Sbjct 2591  CTCTTTCCTATTCTGA  2606

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