Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07540
Subject:
NR_027288.1
Aligned Length:
2062
Identities:
964
Gaps:
1040

Alignment

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct    1  GGTTGATGGTGCGCGGGGCTGGCGGGCAGTTGGCATGAGCGGGACCGAAGCTGAGGCAGGAAGAGCCGGCACCA  74

Query    2  TGGTGGAGAAGGAGGAGGCTGGCGGCGGCATTAGCGAGGAGGAGGC-GGCACAGTATGACCGGCAGATCCGCCT  74
            ||||||||||||||||||||||.||.|||||.|||.|||||||||| |||.||||||||||.|||||||.||||
Sbjct   75  TGGTGGAGAAGGAGGAGGCTGGAGGTGGCATCAGCCAGGAGGAGGCAGGCGCAGTATGACCAGCAGATCTGCCT  148

Query   75  GTGGGGACTGGAGGCCCAGAAACGGCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCTTGAAAGGACTTGGGGCTG  148
            .||||||||||||||||.||||.|||||||||||||.|.|||||||||||..|||.||||||||||.|||||||
Sbjct  149  TTGGGGACTGGAGGCCCCGAAATGGCTGCGGGCCTCCCAGGTGCTTCTTGCAGGCATGAAAGGACTCGGGGCTG  222

Query  149  AAATTGCCAAGAATCTCATCTTGGCAGGAGTGAAAGGACTGACCATGCTGGATCACGAACAGGTAACTCCAGAA  222
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||.||||||||
Sbjct  223  AAATTGCCAAGAATCTCATCCTGGCAGGAGTGAAAGGACTGACCATGCTGGATCACAAACAGATATCTCCAGAA  296

Query  223  GATCCCGGAGCTCAGTTCTTGATTCGTACTGGGTCTGTTGGCCGAAATAGGGCTGAAGCCTCTTTGGAGCGAGC  296
            ||.|||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAACCCGGAGCTCAGTTCTTGATTCGTATTGGGTCTGTTGGCCGAAATAGGGCTGAAGCCTCTTTGGAGCGAGC  370

Query  297  TCAGAATCTCAACCCCATGGTGGATGTGAAGGTGGACACTGAGGATATAGAGAAGAAACCAGAGTCATTTTTCA  370
            |||||||||.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCAGAATCTTAACCCCATGGTGGATGTGAAGTTGGACACTGAGGATATAGAGAAGAAACCAGAGTCATTTTTCA  444

Query  371  CTCAATTCGATGCTGTGTGTCTGACTTGCTGCTCCAGGGATGTCATAGTTAAAGTTGACCAGATCTGTCACAAA  444
            |||||||.|||||||||||| ||||||||||||||||||.||||||||||||.|||||||||||||||||||||
Sbjct  445  CTCAATTTGATGCTGTGTGT-TGACTTGCTGCTCCAGGGCTGTCATAGTTAAGGTTGACCAGATCTGTCACAAA  517

Query  445  AATAGCATCAAGTTCTTTACAGGAGATGTTTTTGGCTACCATGGATACACATTTGCCAATCTAGGAGAGCATGA  518
            ||||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||||.|||||
Sbjct  518  AATAGCATCAAGTTCTTTGCAGGAGATGTTTTTAGCTACCATGGATACACATTTGCCAATCTAGGAGAACATGA  591

Query  519  GTTTGTAGAGGAGAAAACTAAAGTTGCCAAAGTTAGCCAAGGAGTAGAAGATGGGCCCGACACCAAGAGAGCAA  592
            |||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||.||||||||||.||
Sbjct  592  GTTTGTAGAGGAGAAAACTAAAGTTGCTAAAGTTAGCCAAGGAGTAGAAGATGGGCCTGATACCAAGAGAGTAA  665

Query  593  AACTTGATTCTTCTGAGACAACGATGGTCAAAAAGAAGGTGGTCTTCTGCCCTGTTAAAGAAGCCCTGGAGGTG  666
            |||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||||
Sbjct  666  AACTTGATTCTTCTGAGACAACGATGGTCAAGAAGAAGGTGGTCTTCTGCCCCGTTAAAGAAGCGCTGGAGGTG  739

Query  667  GACTGGAGCAGTGAGAAAGCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTCTCCTTCAAGTGCTCTT  740
            ||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|
Sbjct  740  GACTGGAGCAGTAAGAAAGCAAAGGCTGCTCTGAAGCGCACGACCTCCGACCACTTTCTCCTTCAAGTGCTCCT  813

Query  741  AAAGTTCCGTACAGATAAAGGAAGAGATCCCAGTTCTGATACATATGAGGAAGATTCTGAGTTGTTGCTCCAGA  814
            |||||||||.|||||||||||||||||||||||||||||||||.|.|.|||||||||.||||||||||||||||
Sbjct  814  AAAGTTCCGCACAGATAAAGGAAGAGATCCCAGTTCTGATACACACGGGGAAGATTCCGAGTTGTTGCTCCAGA  887

Query  815  TACGAAATGATGTGCTTGACTCACTGGGTATTAGTCCTGACCTGCTTCCTGAGGACTTTGTCAGGTACTGCTTC  888
            |||||||.|||||||||||||||||||||||||.||||||||.||         .||||.|||.|||||.||||
Sbjct  888  TACGAAACGATGTGCTTGACTCACTGGGTATTATTCCTGACCCGC---------GCTTTATCACGTACTTCTTC  952

Query  889  TCCGAGATGGCCCCAGTGTGTGCGGTGGTTGGAGGGATTTTGGCACAGGAAATTGTGAAGGCCCTGTCTCAGCG  962
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  953  TCTGAGATGGCCCCAGTGTGTGCGGTGGTTGGAGGGATTTTGGCACAGGAAATTGTGAAGGCCCTGTCTCAGCA  1026

Query  963  GGACCCTCCTCACAACAACTTCTTCTTCTTCGATGGCATGAAGGGGAATGGGATTGTGGAGTGCCTTGACCCCA  1036
            |||||||||||||||      ||||||||||.|||||||||||||||||||||||.|||||||.||||.|||||
Sbjct 1027  GGACCCTCCTCACAA------CTTCTTCTTCAATGGCATGAAGGGGAATGGGATTCTGGAGTGGCTTGGCCCCA  1094

Query 1037  AG------------------------------------------------------------------------  1038
            ||                                                                        
Sbjct 1095  AGTGAACCCAAGACTTGGCAGCCCTGGAGATGCCAATTGCAACATGCCTGCCTGTATTCCCTGTCCCCCTCCTT  1168

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1169  CGTGAAGGCATCTCCAGGCAAGGAAAACTGAAGTCATCGGCCCAGTACAAAACATTTCCTGCGACGAAGGAGGT  1242

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1243  GGTGCCGTCATGCTGCTTCCCATCACCCGCAGCTGCTTGACAAGGGGTGCAGGGCAGCTGTCTTTGTTCCAGCA  1316

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1317  CTGTTCAGACTGCCTGCTGTCCCAGGCCTGCCAGCTCCCCTGAGTGATAAGCACTTCCAAGCACCCCTCTGCCC  1390

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1391  CTTCTCTGTCCTTATGCTGTCACGGCCTCGCCAGCCCTCTAGGGTATTATGGGAGATGCCTGCCAGGAACGAGC  1464

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1465  ATGCTCTGTTGCTTAGGAGCCTCTTGCCACCTTCTTGGACTTAACTCCCCACCTGATGTCTTACAGAGAGGAGC  1538

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1539  GTGACTTCAGGTGGAGAGTAGGCCCAGGCCCCATGAGGCACCAGTGGAAGCACAGCTCCAAGTTCAGACAGGTG  1612

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1613  CCCTTAGAGAGGAAACCCATGACAGGCAAATGCATTTCCTCTGGAGTTTGAGACCCTGACGAACAACAGGTGGC  1686

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1687  ATCTGGTGTGCCGTTCTTGAGTTTTCGTTTAGGATTCGTTGAGTTCCAGCTGGGTTTTGGGAGAAAGGAGATGC  1760

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1761  TACCAAGTCTTGGATGTTAGGGCGAGACCCTGCAAGTTGAGTATTAGTGGGAGAGCTTGTCTTTCAAGGCAGGT  1834

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1835  TCCTGGGGCTTCAGGGCTAGGAGGCAGGAGCTTGCCCTTTTAACACAACCCCAGTCACCCATGCGGCCCAGGCC  1908

Query 1039  --------------------------------------------------------------------------  1038
                                                                                      
Sbjct 1909  ACTCAGAGGCTGTTGCATTTCAGGGCTGTGTTGGTCCTCTGTTTACCTCCTAAACCACAGCTGTTTGTGTTTCA  1982

Query 1039  ----------------------------------------------------------------  1038
                                                                            
Sbjct 1983  CATATGTTCTGAATTTTCCTTGGTTCTTTTTAAAGGAATGATAATAAAGTTACTTGCTTTAGGA  2046

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