Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07592
Subject:
NR_138483.2
Aligned Length:
2288
Identities:
1247
Gaps:
1040

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCGTGAACGTGCTGCCGCCGATCAGTCACCCAGTCGGCTGGAGTCGGAGGCGATATTTCTAGGGGTGTACTTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGGGGTCAGGGTAAGCACCAGCCACAAAAACCTACAAAAGAAGGGAAATTACTGTCTTTAAATATTAAAAAAA  148

Query    1  ----------ATGAGTGGGCATCGATCAACAAGGAAAAGATGTGGAGATTCTCACCCGGAGTCCCCAGTGGGCT  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AACAAGATCCATGAGTGGGCATCGATCAACAAGGAAAAGATGTGGAGATTCTCACCCGGAGTCCCCAGTGGGCT  222

Query   65  TCGGGCATATGAGTACTACAGGATGTGTATTAAATAAATTGTTTCAGTTACCAACACCACCATTGTCAAGACAC  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCGGGCATATGAGTACTACAGGATGTGTATTAAATAAATTGTTTCAGTTACCAACACCACCATTGTCAAGACAC  296

Query  139  CAACTAAAGCGGCTAGAAGAACACAGATATCAAAGTGCTGGACGGTCCCTGCTTGAGCCCTTAATGCAAGGGTA  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAACTAAAGCGGCTAGAAGAACACAGATATCAAAGTGCTGGACGGTCCCTGCTTGAGCCCTTAATGCAAGGGTA  370

Query  213  TTGGGAATGGCTCGTTAGAAGAGTTCCCTCCTGGATTGCCCCAAATCTCATCACCATCATTGGACTGTCAATAA  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTGGGAATGGCTCGTTAGAAGAGTTCCCTCCTGGATTGCCCCAAATCTCATCACCATCATTGGACTGTCAATAA  444

Query  287  ACATCTGTACAACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCATATATT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACATCTGTACAACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCATATATT  518

Query  361  GCTTGTGCCTGTGGCCTTTTCATTTACCAGTCTTTGGATGCTATTGATGGGAAACAGGCAAGAAGAACCAATAG  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTTGTGCCTGTGGCCTTTTCATTTACCAGTCTTTGGATGCTATTGATGGGAAACAGGCAAGAAGAACCAATAG  592

Query  435  TAGTTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGATTCACTATCAACAGTTTTTGTGGTTCTCGGAACTT  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  593  TAGTTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGATTCACTATCAACAGTTTTTGTGGTTCTTGGAACTT  666

Query  509  GTATTGCAGTGCAGCTGGGGACAAACCCTGATTGGATGTTTTTTTGTTGTTTTGCGGGGACATTTATGTTCTAT  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTATTGCAGTGCAGCTGGGGACAAACCCTGATTGGATGTTTTTTTGTTGTTTTGCGGGGACATTTATGTTCTAT  740

Query  583  TGTGCGCACTGGCAAACGTATGTTTCTGGAACATTGCGATTTGGAAT---------------------------  629
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct  741  TGTGCGCACTGGCAAACGTATGTTTCTGGAACATTGCGATTTGGAATATTCGATGTTACAGAGTCCCAGATCAT  814

Query  630  ----------------------------------------------------------AATTGATGTGACTGAA  645
                                                                      ||||||||||||||||
Sbjct  815  AATTATAATATGCCAGCTTCTCACAGGAACCCTGGGGCCTTGGTTCTGGAACTTCACGAATTGATGTGACTGAA  888

Query  646  GTGCAAATCTTCATAATAATCATGCATTTGCTGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCC  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTGCAAATCTTCATAATAATCATGCATTTGCTGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCC  962

Query  720  AGTGCTGAATATTCAAATGAAAATTTTTCCTGCACTTTGTACTGTAGCAGGGACCATATTTTCCTGTACAAATT  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGTGCTGAATATTCAAATGAAAATTTTTCCTGCACTTTGTACTGTAGCAGGGACCATATTTTCCTGTACAAATT  1036

Query  794  ACTTCCGTGTAATCTTCACAGGTGGTGTTGGCAAAAATGGATCAACAATAGCAGGAACAAGTGTCCTTTCTCCT  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACTTCCGTGTAATCTTCACAGGTGGTGTTGGCAAAAATGGATCAACAATAGCAGGAACAAGTGTCCTTTCTCCT  1110

Query  868  TTTCTCCATATTGGATCAGTGATTACATTAGCTGCAATGATCTACAAGAAATCTGCAGTTCAGCTTTTTGAAAA  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTTCTCCATATTGGATCAGTGATTACATTAGCTGCAATGATCTACAAGAAATCTGCAGTTCAGCTTTTTGAAAA  1184

Query  942  GCATCCCTGTCTTTATATACTGACATTTGGTTTTGTGTCTGCTAAAATCACTAATAAGCTTGTGGTTGCACACA  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCATCCCTGTCTTTATATACTGACATTTGGTTTTGTGTCTGCTAAAATCACTAATAAGCTTGTGGTTGCACACA  1258

Query 1016  TGACGAAAAGTGAAATGCATTTGCATGACACAGCATTCATAGGTCCGGCACTTTTGTTTCTGGACCAGTATTTT  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGACGAAAAGTGAAATGCATTTGCATGACACAGCATTCATAGGTCCGGCACTTTTGTTTCTGGACCAGTATTTT  1332

Query 1090  AACAGCTTTATTGATGAATATATTGTACTTTGGATTGCCCTGGTTTTCTCTTTCTTTGATTTGATCCGCTACTG  1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AACAGCTTTATTGATGAATATATTGTACTTTGGATTGCCCTGGTTTTCTCTTTCTTTGATTTGATCCGCTACTG  1406

Query 1164  TGTCAGTGTTTGCAATCAGATTGCGTCTCACCTGCACATACATGTCTTCAGAATCAAGGTCTCTACAGCTCATT  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGTCAGTGTTTGCAATCAGATTGCGTCTCACCTGCACATACATGTCTTCAGAATCAAGGTCTCTACAGCTCATT  1480

Query 1238  CTAATCATCAT---------------------------------------------------------------  1248
            |||||||||||                                                               
Sbjct 1481  CTAATCATCATTAATGATGTAATTGGTATATAGGAACATCATGTTTTCTGCAGGAAAGAAAGTAACATATTAAG  1554

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1555  GAGAATGGGGGTGGATAAGAACAAATATAATTTATAATAATCAATGTTGTATAACTTTTATTCTTTATTATTGG  1628

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1629  TAACACGCCCTAACTATCCTGTGTGAGAATGGGAATTTCAAGTCCCATCTTGTAAATTGTATATGTTGTCATGC  1702

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1703  AGGGTTTGGGCCAAGAAAGCATGCAGAAAAAAATGCCATGTGATTGTAATTATCCTGGATTCAGAATAATACTG  1776

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1777  TGATGGGGAGCCAGATCCGCAGTGGTGGAGAGTTCTAATGTTGACTGTTTGCAGGCCAAAAGATGATTGCTTTA  1850

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1851  TAATTTTAACAAATCATTGTCTTTTAGTAACATCCTTGTTTAGTGTCTTCTCAAGCTTTCTTTACTGAGGAATT  1924

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1925  CAGCTTGTGACACAGATACATCCCACTAGCTTGTGAGGTGGAACTAGTAATAAAGACCTTGAATTTGGATTGAA  1998

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1999  AAGTTTCCTATCTTTACATTGTTGAGGAAGTCCTTTTTTTTTTTTTTTTTTTTTTAATTGCTCAAGAAATGATT  2072

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2073  CTCTCACAGGCTTGGGAAATCCTGTTAGCATGCAGAATAATGTGGTAACTTTGTCAATTTCCCATTTTATTTTT  2146

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2147  TTAAATAAATATATGATCTAAAAGCCAACTTTTTCTCAGTTTTACTCAGTGGAAAGATAAACTAAGTTTTAATG  2220

Query 1249  --------------------------------------------------------------------  1248
                                                                                
Sbjct 2221  TTATTTTTTTAAATTTAAGCAAAATTTATTTCTGTTCTTTAATAAATAAGAAAATGTGGTCCACTGCA  2288

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