Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07641
Subject:
NR_029403.1
Aligned Length:
1948
Identities:
1479
Gaps:
468

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAGAGTAGCGGAAGTGGTCCGTTCTCTTCCTCTCCCGGCCCAAGCTTCTGGGTATTTCTATTGCGCGAGGCAT  74

Query    1  ---------------------------------------------------------------------ATGAT  5
                                                                                 |||||
Sbjct   75  TGTGGGTTGCTGGGCGGCCCGGTCTCGGAGAAGAGGGGAGAGTGGCGGGCCGCTGAATAAGCTTCCAAAATGAT  148

Query    6  GCCCACACCAGTTATCCTATTGAAAGAGGGGACTGATAGCTCCCAAGGCATCCCCCAGCTTGTGAGTAACATCA  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCCCACACCAGTTATCCTATTGAAAGAGGGGACTGATAGCTCCCAAGGCATCCCCCAGCTTGTGAGTAACATCA  222

Query   80  GTGCCTGCCAGGTGATTGCTGAGGCTGTAAGAACTACCCTGGGTCCCCGTGGCATGGACAAGCTTATTGTAGAT  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GTGCCTGCCAGGTGATTGCTGAGGCTGTAAGAACTACCCTGGGTCCCCGTGGCATGGACAAGCTTATTGTAGAT  296

Query  154  GGCAGAGGCAAAGCAACAATTTCTAATGATGGGGCCACAATTCTGAAACTTCTTGATGTTGTCCATCCTGCAGC  227
            |                                                                         
Sbjct  297  G-------------------------------------------------------------------------  297

Query  228  AAAGACTTTGGTAGACATTGCCAAATCCCAAGATGCTGAGGTGGGTGATGGCACCACCTCAGTGACCTTGCTGG  301
                                                                                      
Sbjct  298  --------------------------------------------------------------------------  297

Query  302  CTGCAGAGTTTCTGAAGCAGGTGAAACCCTATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCTTTC  375
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  --GCAGAGTTTCTGAAGCAGGTGAAACCCTATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCTTTC  369

Query  376  CGCACAGCCACCCAGCTGGCAGTTAACAAGATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGTGGA  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  CGCACAGCCACCCAGCTGGCAGTTAACAAGATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGTGGA  443

Query  450  GCAGAGGAAGCTGCTGGAAAAGTGTGCCATGACCGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAAAGCTTTCT  523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  GCAGAGGAAGCTGCTGGAAAAGTGTGCCATGACCGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAAAGCTTTCT  517

Query  524  TTGCTAAGATGGTGGTGGATGCAGTGATGATGCTCGATGATTTGCTGCAGCTTAAAATGATTGGAATCAAGAAG  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  TTGCTAAGATGGTGGTGGATGCAGTGATGATGCTCGATGATTTGCTGCAGCTTAAAATGATTGGAATCAAGAAG  591

Query  598  GTACAGGGTGGAGCCCTCGAGGATTCTCAGCTGGTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGG  671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  GTACAGGGTGGAGCCCTCGAGGATTCTCAGCTGGTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGG  665

Query  672  GTTTGAAATGCAACCCAAAAAGTACCACAATCCCAAGATTGCCCTTTTGAATGTCGAGCTCGAGTTGAAAGCTG  745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  GTTTGAAATGCAACCCAAAAAGTACCACAATCCCAAGATTGCCCTTTTGAATGTCGAGCTCGAGTTGAAAGCTG  739

Query  746  AGAAAGACAATGCTGAGATAAGAGTCCACACAGTTGAGGATTATCAGGCAATTGTTGATGCTGAGTGGAACATT  819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  AGAAAGACAATGCTGAGATAAGAGTCCACACAGTTGAGGATTATCAGGCAATTGTTGATGCTGAGTGGAACATT  813

Query  820  CTCTATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTTGTCTTGTCCAAACTCCCCATTGGGGATGT  893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  CTCTATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTTGTCTTGTCCAAACTCCCCATTGGGGATGT  887

Query  894  GGCCACCCAGTACTTTGCTGACAGGGACATGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGGACAA  967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  GGCCACCCAGTACTTTGCTGACAGGGACATGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGGACAA  961

Query  968  TGATGGCCTGTGGAGGCTCAATCCAGACCAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCCAGGTG  1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  TGATGGCCTGTGGAGGCTCAATCCAGACCAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCCAGGTG  1035

Query 1042  TTTGAAGAGACCCAGATTGGAGGCGAGAGGTACAATTTTTTTACTGGCTGCCCCAAGGCCAAGACATGCACCTT  1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TTTGAAGAGACCCAGATTGGAGGCGAGAGGTACAATTTTTTTACTGGCTGCCCCAAGGCCAAGACATGCACCTT  1109

Query 1116  CATTCTCCGTGGCGGCGCCGAGCAGTTTATGGAGGAGACAGAGCGGTCCCTGCATGATGCCATCATGATCGTCA  1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  CATTCTCCGTGGCGGCGCCGAGCAGTTTATGGAGGAGACAGAGCGGTCCCTGCATGATGCCATCATGATCGTCA  1183

Query 1190  GGAGGGCCATCAAGAATGATTCAGTGGTGGCTGGTGGCGGGGCCATTGAGATGGAACTCTCCAAGTACCTGCGG  1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GGAGGGCCATCAAGAATGATTCAGTGGTGGCTGGTGGCGGGGCCATTGAGATGGAACTCTCCAAGTACCTGCGG  1257

Query 1264  GATTACTCAAGGACTATTCCAGGAAAACAGCAGCTGTTGATTGGGGCTTATGCCAAGGCCTTGGAGATTATCCC  1337
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1258  GATTACTCAAGGACTATTCCAGGAAAACAGCAGCTGTTGATTGGGGCATATGCCAAGGCCTTGGAGATTATCCC  1331

Query 1338  ACGCCAGCTGTGTGACAATGCTGGCTTTGATGCCACAAACATTCTCAACAAGCTGCGGGCTCGGCATGCCCAGG  1411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  ACGCCAGCTGTGTGACAATGCTGGCTTTGATGCCACAAACATTCTCAACAAGCTGCGGGCTCGGCATGCCCAGG  1405

Query 1412  GGGGTACATGGTATGGAGTAGACATCAACAACGAGGACATTGCTGACAACTTTGAAGCTTTCGTGTGGGAGCCA  1485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  GGGGTACATGGTATGGAGTAGACATCAACAACGAGGACATTGCTGACAACTTTGAAGCTTTCGTGTGGGAGCCA  1479

Query 1486  GCTATGGTGCGGATCAATGCGCTGACAGCAGCCTCTGAGGCTGCGTGCCTGATCGTGTCTGTAGATGAAACCAT  1559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  GCTATGGTGCGGATCAATGCGCTGACAGCAGCCTCTGAGGCTGCGTGCCTGATCGTGTCTGTAGATGAAACCAT  1553

Query 1560  CAAGAACCCCCGCTCGACTGTGGATGCTCCCACAGCAGCAGGCCGGGGCCGTGGTCGTGGCCGCCCCCAC----  1629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 1554  CAAGAACCCCCGCTCGACTGTGGATGCTCCCACAGCAGCAGGCCGGGGCCGTGGTCGTGGCCGCCCCCACTGAG  1627

Query 1630  --------------------------------------------------------------------------  1629
                                                                                      
Sbjct 1628  AGGCACCCCACCCATCACATGGCTGGCTGGCTGCTGGGTGCACTTACCCTCCTTGGCTTGGTTACTTCATTTTA  1701

Query 1630  --------------------------------------------------------------------------  1629
                                                                                      
Sbjct 1702  CAAGGAAGGGGTAGTAATTGGCCCACTCTCTTCTTACTGGAGGCTATTTAAATAAAATGTAAGACTTCAGATAA  1775

Query 1630  ------------------------  1629
                                    
Sbjct 1776  CTTTGTAAATTAAAAAAAAAAAAA  1799

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.