Nucleotide Global Alignment

Description

• Query: ccsbBroad304_07695
• Subject: XR_001753591.1
• Aligned Length: 3293
• Identities: 1911
• Gaps: 1378

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCCAGAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAGGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTGTGTG  222

Query    1  -----------------------------------------------------------------ATGACCCCC  9
                                                                             |||||||||
Sbjct  223  TCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGACCCCC  296

Query   10  ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA  370

Query   84  GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC  444

Query  158  AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT  518

Query  232  GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACATGCAGGGCGGTATCGCTGTTACTATGGTAG  305
            ||||||||||||||||||||||||||||||||||||||||||||..||||||||||||||||||||||||||||
Sbjct  519  GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATGGTAG  592

Query  306  CGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC  666

Query  380  TCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGCATTT  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGCATTT  740

Query  454  GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCCGTGG  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCCGTGG  814

Query  528  GTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCTTATG  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCTTATG  888

Query  602  ACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG  675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG  962

Query  676  CCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTGATGC  749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTGATGC  1036

Query  750  TGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCCCAGG  823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCCCAGG  1110

Query  824  CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGT  897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGT  1184

Query  898  GCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGACAGTTCTATGA  971
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 1185  GCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATC-----------------  1241

Query  972  CAGAGTCTCCCTCTCGGTGCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC  1045
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242  ------------------GCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC  1297

Query 1046  AGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTAC  1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298  AGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTAC  1371

Query 1120  CAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGTGCTA  1193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372  CAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGTGCTA  1445

Query 1194  CGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGACCGT  1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446  CGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGACCGT  1519

Query 1268  CTGGGGGCCCCAGCTCCCCGACAACAGGCCCCACCTCCACATCT---GGCCCTGAGGACCAGCCCCTCACCCCC  1338
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct 1520  CTGGGGGCCCCAGCTCCCCGACAACAGGCCCCACCTCCACATCTGCAGGCCCTGAGGACCAGCCCCTCACCCCC  1593

Query 1339  ACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCT  1412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594  ACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCT  1667

Query 1413  ACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGACCC  1486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668  ACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGACCC  1741

Query 1487  AGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGG  1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742  AGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGG  1815

Query 1561  TCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGGGGT  1634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816  TCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGGGGT  1889

Query 1635  GGAGATGGACACTCG---GAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCA  1705
            |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890  GGAGATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCA  1963

Query 1706  GACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCG  1779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964  GACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCG  2037

Query 1780  GAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCA  1853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038  GAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCA  2111

Query 1854  CAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCA  1927
            ||||||||||||.||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2112  CAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCA  2185

Query 1928  TCTACGCCACTCTGGCCATCCAC---------------------------------------------------  1950
            |||||||||||||||||||||||                                                   
Sbjct 2186  TCTACGCCACTCTGGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATG  2259

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2260  GGAGCTGCCCCCCCAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTT  2333

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2334  AGGGGTCACTCAATTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAAT  2407

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2408  AATCAATGAAGTAGCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACATCA  2481

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2482  AGCGATGAAACTGGAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCT  2555

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2556  TGGCTTTCCTATAAGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAG  2629

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2630  GCGGGCAGATCACGAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATA  2703

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2704  CAAAAATTAGCTGGATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTG  2777

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2778  AACCAGGGAGTCAGAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCC  2851

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2852  ATCTCAAATTAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTC  2925

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 2926  CAAATGAAGGCGTAAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAA  2999

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 3000  AATTCAACAAAGCCAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAAAAG  3073

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 3074  AGAAAGAAAGAGCAGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTT  3147

Query 1951  --------------------------------------------------------------------------  1950
                                                                                      
Sbjct 3148  TCCAAAACTAACAATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAAATA  3221

Query 1951  -------------------------------------  1950
                                                 
Sbjct 3222  TTCTAAACTGGAGTTTACATAATGAACATAAGAGTAA  3258