Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07723
- Subject:
- NM_001278398.2
- Aligned Length:
- 1968
- Identities:
- 1109
- Gaps:
- 690
Alignment
Query 1 ATGATCCCCACCTTCACGGCTCTGCTCTGCCTCGGGCTGAGTCTGGGCCCCAGGACCGACATGCAGGCAGGGCC 74
||||.|||||.|.||||||..|||.||||.|||||||||||||||||||||.|||||.||.||||||||||||.
Sbjct 1 ATGACCCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCA 74
Query 75 CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGTGACCATCTGGTGTC 148
|||||||||.|||||||||||||||||.||||||||||||||||.|..|||||...||||||||.||.||||||
Sbjct 75 CCTCCCCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTC 148
Query 149 AGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATAAAGAGGAAAG--CCCAGCACCCTGGGACAGACAGAACC 220
|||||..||.||||.|.|.|||||||||||| |||.||||.|||| ..|||||||||||...|.||.||.||
Sbjct 149 AGGGGGGCCAGGAGACCCAGGAGTACCGTCT--ATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCC 220
Query 221 CACTGGAGCCCAAGAACAA-GGCCAGATTCTCCATCCCATCCATGACAGAGGACTATGCAGGGAGATACCGCTG 293
|||.|||||....|||.|| |||||| |||.|||||||||||||.||...|||..|..|||||.|.||.|||||
Sbjct 221 CACAGGAGCTTGTGAAGAAGGGCCAG-TTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTG 293
Query 294 TTACTATCGCAG---CCCTGTAGGCTGGTCACAGCCCAGTGACCCCCTGGAGCTGGTGATGACAGGAGCCTACA 364
|||||||.|.|| |.|||.||||.|.|||.||..||||||||||||||||||||||.|||||||||||||||
Sbjct 294 TTACTATGGTAGCGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACA 367
Query 365 GTAAACCCACCCTTTCAGCCCTG--------------------------------------------------- 387
..|||||||||||.|||||||.|
Sbjct 368 TCAAACCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCA 441
Query 388 -------------------------------------------------------------------------- 387
Sbjct 442 CAGGTGGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCC 515
Query 388 -------------------------------------------------CCGAGTC------------------ 394
|||||||
Sbjct 516 CCATGCCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGT 589
Query 395 -------------------CTCT--------------------------------------------------- 398
||||
Sbjct 590 GCTATGCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGT 663
Query 399 -------------------------------------------------------------------------- 398
Sbjct 664 GTTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTG 737
Query 399 -------------------------------------------------------------------------- 398
Sbjct 738 TGGCTCTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCG 811
Query 399 ----------------------------------------------TGTGA----------------------- 403
|||||
Sbjct 812 CACAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTAC 885
Query 404 -------------------------------------------------------------------------- 403
Sbjct 886 AGATGCTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGG 959
Query 404 --------------------------------------------------CCTCAGGAAAGAGCGTGACCCTGC 427
||||||||.|||.|||||||||||
Sbjct 960 ACAGTTCTATGACAGAGTCTCCCTCTCGGTGCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGC 1033
Query 428 TGTGTCAGTCACGGAGCCCAATGG----ACACTTTCCTTCTGATCAAGGAGCGGGCAGCCCATCCCCTACTGCA 497
||||||||||||.|.| |||| |.|||||||||||||.|||||||.|||||||..||..||.|..||.
Sbjct 1034 TGTGTCAGTCACAGGG----ATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCG 1103
Query 498 TCTGAGATCAGAGCACGGAGCTCAGCAGCACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGTGCACGGGG 571
|||.||||||..|.||..|.||||..|..||||||||||||||||||||.|||||||||||||||..||.|.||
Sbjct 1104 TCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGG 1177
Query 572 GGACCTACAGGTGCTTCAGCTCACACGGCTTCTCCCA----CTACCTGCTGTCACACCCCAGTGACCCCCTGGA 641
|||||||||||||||.|.|||||||..||| ||| ||||||||||.|.||||||||||||||||||||
Sbjct 1178 GGACCTACAGGTGCTACGGCTCACAGAGCT----CCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGA 1247
Query 642 GCTCATAGTCTCAGGATCCTTGGAGGGTCCCAGGCCCTCACCCACAAGGTCCGTCTCAACAGCTGCAGGCCCTG 715
||||.|.|||||| ||||||||||
Sbjct 1248 GCTCGTGGTCTCA---------------------------------------------------GCAGGCCCTG 1270
Query 716 AGGACCAGCCCCTCATGCCTACAGGGTCAGTCCCCCACAGTGGTCTGAGAAGGCA-CTGGGAGGTACTGATCGG 788
|||||||||||||||..||.||.|||||.|..|||||.|||||||||.||||||| ||||| |||..|||||||
Sbjct 1271 AGGACCAGCCCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGG-GGTTGTGATCGG 1343
Query 789 GGTCTTGGTGGTCTCCATCCTGCTTCT-CTC-----CCTCCTCCTCTTCCTCCTCCTCCAACACTGGCGTCAGG 856
..|||||||||.|..||||||.||.|| ||| ||||||||||||||||.||||||.|||..|.|||||||
Sbjct 1344 CATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGG 1417
Query 857 GAAAACACAGGACATTGGCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCCCAAG 930
|.||||||.||||||.|.||||||||.|||||||||||||||.||||.|||||||||..|.|||||||||||..
Sbjct 1418 GCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACA 1491
Query 931 GACGGGGGCCTACAGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTGTGCTGCCGTGAAGAA 1004
|||.|.|||||.|||.|||||||||||||||||||.||.|.|||||.|||||||.|||.|||||||||||||.|
Sbjct 1492 GACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCA 1565
Query 1005 CACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGT 1078
|||||||||||||||.||||||||.||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1566 CACACAGCCTGAGGATGGGGTGGAGATGGACACTCG---GAGCCCACACGATGAAGACCCCCAGGCAGTGACGT 1636
Query 1079 ATGCCAAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTG 1152
|||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1637 ATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTG 1710
Query 1153 GACACAAAGGACAGACAGGCAGAAGAGGACAGACAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGA 1226
||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GACACAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGA 1784
Query 1227 TGTGACCTACGCCCGGCTGCACAGCTTTACCCTCAGACAGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGG 1300
||||||||||||||.||||||||||||.||||||||||.|.||||||||||||||||||||||||||||||||.
Sbjct 1785 TGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGC 1858
Query 1301 CCTCTCCAGCTGAGCCCAGTGTCTATGCCACTCTGGCCATCCAC 1344
||||||||||||.||||||..||||.||||||||||||||||||
Sbjct 1859 CCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCAC 1902