Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07729
Subject:
XR_001753591.1
Aligned Length:
3296
Identities:
1178
Gaps:
2017

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCCAGAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAGGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTGTGTG  222

Query    1  -----------------------------------------------------------------ATGACCTCC  9
                                                                             ||||||.||
Sbjct  223  TCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGACCCCC  296

Query   10  ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGCCTGGACCCCAGGACCCACGTGCAGGCAGGGCCCCTCCCCAA  83
            ||||||||||||||||||||||||||||||||.||||.||||.|||||||||||||||||||||.|||||||||
Sbjct  297  ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA  370

Query   84  GCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCACCCAAGGGAGTCCTGTGACCCTCAGGTGTCAGGGGAGCC  157
            ||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||.|||
Sbjct  371  GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC  444

Query  158  TGGAGACGCAGGAGTACCATCTATATAGAGAAAAGAAAACAGCACTCTGGATTACACGGATCCCACAGGAGCTT  231
            .||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  445  AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT  518

Query  232  GTGAAGAAGGGCCAGTTCCCCATCCTATCCATCACCTGGGAACATGCAGGGCGGTATTGCTGTATCTATGGCAG  305
            |||||||||||||||||||||||||.||||||||||||||||||..|||||||||||.|||||..||||||.||
Sbjct  519  GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATGGTAG  592

Query  306  CCACACTGTAGGCCTCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAGCAAACCCACCC  379
            |.||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  593  CGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC  666

Query  380  TCTCAGCTCTGCCCAGCCCTGTGGTGACCTCAGGAGGGAATGTGACCATCCAGTGTGACTCACAGGTGGCATTT  453
            |||||||.|.|||||||||.|||||||.|||||||||||||||.|||.||||||||||||||||||||||||||
Sbjct  667  TCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGCATTT  740

Query  454  GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCATTCCCATGCCCGTGG  527
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||||||||||
Sbjct  741  GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCCGTGG  814

Query  528  GTCATCCCGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCAAGTCGCAGGTGGTCGTACAGGTGCTATGGTTATG  601
            |||.|||||.|||||||||||||||||||||||||||||.|||||||||||||.||||||||||||||.|||||
Sbjct  815  GTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCTTATG  888

Query  602  ACTCGCGCGCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGGGCTCCTGGTCCCAGGTGTTTCTAAGAAG  675
            |||||..|.|||||||||.||||||||||||||||||||||||||.|||||||||||.||||||||||||||||
Sbjct  889  ACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG  962

Query  676  CCATCACTCTCAGTGCAGCCGGGTCCTGTCGTGGCCCCTGGGGAGAAGCTGACCTTCCAGTGTGGCTCTGATGC  749
            ||||||||||||||||||||.||||||.||||||||||||.|||||..|||||..|.|||||||||||||||||
Sbjct  963  CCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTGATGC  1036

Query  750  CGGCTACGACAGATTTGTTCTGTACAAGGAGTGGGGACGTGACTTCCTCCAGCGCCCTGGCCGGCAGCCCCAGG  823
            .||||||.||||||||||||||||.|||||..|||.||||||||||||.||||.|.|||||...||||||||||
Sbjct 1037  TGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCCCAGG  1110

Query  824  CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACACATGCTCCGGT  897
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||
Sbjct 1111  CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGT  1184

Query  898  GCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCACAGGACAGATCCGTGC  971
            |||.|||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 1185  GCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATC-----------------  1241

Query  972  CAGACCCTTCCTCTCCGTGCGGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC  1045
                              ||.||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1242  ------------------GCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC  1297

Query 1046  AGGGAGGGATGCACACTTTCCTTTTGACCAAGGAGGGGGCAGCTGATTCCCCGCTGCGTCTAAAATCAAAGCGC  1119
            |||||.|||||||.|||||||||.|||||||||||||||||||||||..|||...||||||||.|||||.|..|
Sbjct 1298  AGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTAC  1371

Query 1120  CAATCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCGGCCCACGCGGGGACCTACAGGTGCTA  1193
            ||||||||.||.|||||||||||||||||||||.|||||||||||||.|||||.||||||||||||||||||||
Sbjct 1372  CAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGTGCTA  1445

Query 1194  CGGCTCACTCAGCTCCAACCCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGAGCAG  1267
            ||||||||..||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.|..
Sbjct 1446  CGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGACCGT  1519

Query 1268  CTGAGACCCTCAGC-CCACCACAAAACAAGTCCGA-CTCCA-------AGGCTGGTGAG---------------  1317
            |||.|..||.|||| ||.|.||  ||||.|.||.| |||||       |||| ..||||               
Sbjct 1520  CTGGGGGCCCCAGCTCCCCGAC--AACAGGCCCCACCTCCACATCTGCAGGC-CCTGAGGACCAGCCCCTCACC  1590

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1591  CCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCAT  1664

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1665  CCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGA  1738

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1739  CCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGG  1812

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1813  AGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGG  1886

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1887  GGTGGAGATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACT  1960

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 1961  CCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAG  2034

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2035  GCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCT  2108

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2109  GCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCA  2182

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2183  GCATCTACGCCACTCTGGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGC  2256

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2257  ATGGGAGCTGCCCCCCCAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACT  2330

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2331  TTTAGGGGTCACTCAATTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTC  2404

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2405  AATAATCAATGAAGTAGCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACA  2478

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2479  TCAAGCGATGAAACTGGAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGA  2552

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2553  TCTTGGCTTTCCTATAAGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCC  2626

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2627  GAGGCGGGCAGATCACGAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAA  2700

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2701  ATACAAAAATTAGCTGGATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGC  2774

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2775  TTGAACCAGGGAGTCAGAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGAC  2848

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2849  TCCATCTCAAATTAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTA  2922

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2923  TTCCAAATGAAGGCGTAAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTT  2996

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2997  GAAAATTCAACAAAGCCAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAA  3070

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 3071  AAGAGAAAGAAAGAGCAGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACG  3144

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 3145  TTTTCCAAAACTAACAATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAA  3218

Query 1318  ----------------------------------------  1317
                                                    
Sbjct 3219  ATATTCTAAACTGGAGTTTACATAATGAACATAAGAGTAA  3258

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