Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07729
- Subject:
- XR_001753591.1
- Aligned Length:
- 3296
- Identities:
- 1178
- Gaps:
- 2017
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCCAGAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAGGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTGTGTG 222
Query 1 -----------------------------------------------------------------ATGACCTCC 9
||||||.||
Sbjct 223 TCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGACCCCC 296
Query 10 ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGCCTGGACCCCAGGACCCACGTGCAGGCAGGGCCCCTCCCCAA 83
||||||||||||||||||||||||||||||||.||||.||||.|||||||||||||||||||||.|||||||||
Sbjct 297 ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA 370
Query 84 GCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCACCCAAGGGAGTCCTGTGACCCTCAGGTGTCAGGGGAGCC 157
||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||.|||
Sbjct 371 GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC 444
Query 158 TGGAGACGCAGGAGTACCATCTATATAGAGAAAAGAAAACAGCACTCTGGATTACACGGATCCCACAGGAGCTT 231
.||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 445 AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT 518
Query 232 GTGAAGAAGGGCCAGTTCCCCATCCTATCCATCACCTGGGAACATGCAGGGCGGTATTGCTGTATCTATGGCAG 305
|||||||||||||||||||||||||.||||||||||||||||||..|||||||||||.|||||..||||||.||
Sbjct 519 GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATGGTAG 592
Query 306 CCACACTGTAGGCCTCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAGCAAACCCACCC 379
|.||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 593 CGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC 666
Query 380 TCTCAGCTCTGCCCAGCCCTGTGGTGACCTCAGGAGGGAATGTGACCATCCAGTGTGACTCACAGGTGGCATTT 453
|||||||.|.|||||||||.|||||||.|||||||||||||||.|||.||||||||||||||||||||||||||
Sbjct 667 TCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGCATTT 740
Query 454 GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCATTCCCATGCCCGTGG 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||||||||||
Sbjct 741 GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCCGTGG 814
Query 528 GTCATCCCGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCAAGTCGCAGGTGGTCGTACAGGTGCTATGGTTATG 601
|||.|||||.|||||||||||||||||||||||||||||.|||||||||||||.||||||||||||||.|||||
Sbjct 815 GTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCTTATG 888
Query 602 ACTCGCGCGCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGGGCTCCTGGTCCCAGGTGTTTCTAAGAAG 675
|||||..|.|||||||||.||||||||||||||||||||||||||.|||||||||||.||||||||||||||||
Sbjct 889 ACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG 962
Query 676 CCATCACTCTCAGTGCAGCCGGGTCCTGTCGTGGCCCCTGGGGAGAAGCTGACCTTCCAGTGTGGCTCTGATGC 749
||||||||||||||||||||.||||||.||||||||||||.|||||..|||||..|.|||||||||||||||||
Sbjct 963 CCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTGATGC 1036
Query 750 CGGCTACGACAGATTTGTTCTGTACAAGGAGTGGGGACGTGACTTCCTCCAGCGCCCTGGCCGGCAGCCCCAGG 823
.||||||.||||||||||||||||.|||||..|||.||||||||||||.||||.|.|||||...||||||||||
Sbjct 1037 TGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCCCAGG 1110
Query 824 CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACACATGCTCCGGT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||
Sbjct 1111 CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGT 1184
Query 898 GCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCACAGGACAGATCCGTGC 971
|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATC----------------- 1241
Query 972 CAGACCCTTCCTCTCCGTGCGGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC 1045
||.||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ------------------GCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC 1297
Query 1046 AGGGAGGGATGCACACTTTCCTTTTGACCAAGGAGGGGGCAGCTGATTCCCCGCTGCGTCTAAAATCAAAGCGC 1119
|||||.|||||||.|||||||||.|||||||||||||||||||||||..|||...||||||||.|||||.|..|
Sbjct 1298 AGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTAC 1371
Query 1120 CAATCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCGGCCCACGCGGGGACCTACAGGTGCTA 1193
||||||||.||.|||||||||||||||||||||.|||||||||||||.|||||.||||||||||||||||||||
Sbjct 1372 CAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGTGCTA 1445
Query 1194 CGGCTCACTCAGCTCCAACCCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGAGCAG 1267
||||||||..||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.|..
Sbjct 1446 CGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGACCGT 1519
Query 1268 CTGAGACCCTCAGC-CCACCACAAAACAAGTCCGA-CTCCA-------AGGCTGGTGAG--------------- 1317
|||.|..||.|||| ||.|.|| ||||.|.||.| ||||| |||| ..||||
Sbjct 1520 CTGGGGGCCCCAGCTCCCCGAC--AACAGGCCCCACCTCCACATCTGCAGGC-CCTGAGGACCAGCCCCTCACC 1590
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1591 CCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCAT 1664
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1665 CCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGA 1738
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1739 CCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGG 1812
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1813 AGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGG 1886
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1887 GGTGGAGATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACT 1960
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1961 CCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAG 2034
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2035 GCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCT 2108
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2109 GCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCA 2182
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2183 GCATCTACGCCACTCTGGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGC 2256
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2257 ATGGGAGCTGCCCCCCCAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACT 2330
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2331 TTTAGGGGTCACTCAATTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTC 2404
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2405 AATAATCAATGAAGTAGCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACA 2478
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2479 TCAAGCGATGAAACTGGAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGA 2552
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2553 TCTTGGCTTTCCTATAAGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCC 2626
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2627 GAGGCGGGCAGATCACGAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAA 2700
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2701 ATACAAAAATTAGCTGGATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGC 2774
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2775 TTGAACCAGGGAGTCAGAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGAC 2848
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2849 TCCATCTCAAATTAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTA 2922
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2923 TTCCAAATGAAGGCGTAAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTT 2996
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2997 GAAAATTCAACAAAGCCAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAA 3070
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3071 AAGAGAAAGAAAGAGCAGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACG 3144
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3145 TTTTCCAAAACTAACAATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAA 3218
Query 1318 ---------------------------------------- 1317
Sbjct 3219 ATATTCTAAACTGGAGTTTACATAATGAACATAAGAGTAA 3258
