Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07730
- Subject:
- XR_001753591.1
- Aligned Length:
- 3310
- Identities:
- 1216
- Gaps:
- 1964
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCCAGAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAGGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTGTGTG 222
Query 1 -----------------------------------------------------------------ATGACCCCC 9
|||||||||
Sbjct 223 TCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGACCCCC 296
Query 10 ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGCACCTCCCCAA 83
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 297 ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA 370
Query 84 GCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCATCCAGGGAAGTCCTGTGACCCTCAGGTGTCAGGGGAGCC 157
||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||||||||||||||||.|||
Sbjct 371 GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC 444
Query 158 TTCAGGCTGAGGAGTACCATCTATATAGGGAAAACAAATCAGCATCCTGGGTTAGACGGAT---ACAAGAGCCT 228
...||.|..|||||||||.|||||||||.|||||.|||.|||||.|||||.|||.|||||| |||.||||.|
Sbjct 445 AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT 518
Query 229 GGGAAGAATGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACGCAGGGCGGTATCACTGTCAGTACTA--- 299
|.||||||.||||||||||||||||||||||||||||||||||||.||||||||||||.|||| |||||
Sbjct 519 GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGT---TACTATGG 589
Query 300 CAGCCACAATCACT-CA------TCAGAGTACAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAGCAAA 366
.|||.| |||| || ||||||..||||||||||||||||||||||||||||||||||||||.||||
Sbjct 590 TAGCGA----CACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAA 659
Query 367 CCCACCCTCTCAGCTCTGCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCCAGTGTGTCTCACAGGT 440
||||||||||||||.|.|||||||||.|||||||.||.|||||||||.||.|||||||||||||.|||||||||
Sbjct 660 CCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGT 733
Query 441 GGCATTTGACGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAACGCCTGAACTCCCATTCCCATG 514
|||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||..||||||
Sbjct 734 GGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATG 807
Query 515 CCCGTGGGTGGTCCTGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTGCTAT 588
|||||||||.||||.|.|||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 808 CCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTAT 881
Query 589 GCTTATGACTCGAACTCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCCAGGTGTTTC 662
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 882 GCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTC 955
Query 663 TAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATGGTGGCCCCTGGGGAGAGCCTGACCCTCCAGTGTGTCT 736
||||||||||||||||||||||||||||||||||||.||||||||||.|||||.||||||.||.|||||||.||
Sbjct 956 TAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCT 1029
Query 737 CTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGAGAACGTGACTTCCTCCAGCGCCCTGGTTGGCAG 810
||||||..||||||.||||||||||||||||||||||.||.||||||||||||||.||||.|.||||....|||
Sbjct 1030 CTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAG 1103
Query 811 CCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACAGATG 884
|||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||||||||||||||
Sbjct 1104 CCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATG 1177
Query 885 CTACAGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGTGACCCCCTGGACATCCTGATCACAGGACAGT 958
||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1178 CTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATC---------- 1241
Query 959 TCTATGACAGACCCTCTCTCTCGGTGCAGCCGGTCCCCACAGTAGCCCCAGGAAAGAACGTGACCCTGCTGTGT 1032
||||||||.||||||.||.|||.|||||.||||||||||||||||||||
Sbjct 1242 -------------------------GCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGT 1290
Query 1033 CAGTCACGGGGGCAGTTCCACACTTTCCTTCTGACCAAGGAGGGGGCAGGCCATCCCCCACTGCATCTGAGATC 1106
|||||||.|||...|.|.||.||||||||||||||||||||||||||||...||..||||..||.|||.|||||
Sbjct 1291 CAGTCACAGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATC 1364
Query 1107 AGAGCACCAAGCTCAGCAGAACCAGGCTGAATTCCGCATGGGTCCTGTGACCTCAGCCCACGTGGGGACCTACA 1180
|..|.|||||.||||..|..|||||||||||||||.||||||||||||||||||||||||.|.|||||||||||
Sbjct 1365 AACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACA 1438
Query 1181 GATGCTACAGCTCACTCAGCTCCAACCCCTACCTGCTGTCTCTCCCCAGTGACCCCCTGGAGCTCGTGGTCTCA 1254
|.||||||.||||||..||||||||.||||||||||||.|||.|||||||||||||||||||||||||||||||
Sbjct 1439 GGTGCTACGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCA 1512
Query 1255 G---------------------------------------------CAT-------CCCT-------AGGCCAA 1269
| ||| |||| ||.||..
Sbjct 1513 GGACCGTCTGGGGGCCCCAGCTCCCCGACAACAGGCCCCACCTCCACATCTGCAGGCCCTGAGGACCAGCCCCT 1586
Query 1270 CACCCCCA-------GGAT-TACACAGTGGAGAATCT-------CATCCGCATGGG---TGTGGCTGG---CTT 1322
|||||||| |||| ..||.||||| ||| || |.|||| ||||...|| |||
Sbjct 1587 CACCCCCACCGGGTCGGATCCCCAGAGTGG----TCTGGGAAGGCA----CCTGGGGGTTGTGATCGGCATCTT 1652
Query 1323 GG---------TCCTGGTGGTCCTC-----------------------------------------GGG---AT 1343
|| ||||..||.||||| ||| |.
Sbjct 1653 GGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGGGCAAAC 1726
Query 1344 TCT--------------------GCT-ATTT-------------GAGGCT-------CAG----CACAGCCAGA 1372
.|| ||| |||| |.|||| ||| |||||.||||
Sbjct 1727 ACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACAGACAGA 1800
Query 1373 GAAGCCTACA----AGATGCAGCCGGG------------AGG-------------------------------- 1398
| ||||.|| ||.|.|||||..| |||
Sbjct 1801 G--GCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCACACA 1872
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1873 CAGCCTGAGGATGGGGTGGAGATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGC 1946
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1947 CGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACA 2020
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2021 CAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTG 2094
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2095 ACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTC 2168
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2169 TCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCAT 2242
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2243 GGAGTCTGGAATGCATGGGAGCTGCCCCCCCAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGG 2316
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2317 AGACTCTGGGAACTTTTAGGGGTCACTCAATTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAA 2390
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2391 GCAACAGACTTCTCAATAATCAATGAAGTAGCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAAT 2464
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2465 GTAAATATTACACATCAAGCGATGAAACTGGAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAG 2538
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2539 TAGGAAATGAATGATCTTGGCTTTCCTATAAGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAG 2612
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2613 CACTTTGGGAGGCCGAGGCGGGCAGATCACGAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCC 2686
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2687 TGTCTCTCCTAAAAATACAAAAATTAGCTGGATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGA 2760
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2761 GGCAGGAGAATCGCTTGAACCAGGGAGTCAGAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGG 2834
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2835 CGACAGAGGGAGACTCCATCTCAAATTAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGA 2908
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2909 AGAATAACAAGTTATTCCAAATGAAGGCGTAAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGG 2982
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2983 AAAAACCAAAGCTTGAAAATTCAACAAAGCCAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTC 3056
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3057 TAACTACAATGAAAAAGAGAAAGAAAGAGCAGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTAC 3130
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3131 AGATCGTACACACGTTTTCCAAAACTAACAATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAG 3204
Query 1399 ------------------------------------------------------ 1398
Sbjct 3205 ATTAAATAGATGAAATATTCTAAACTGGAGTTTACATAATGAACATAAGAGTAA 3258
