Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07730
- Subject:
- XR_002958244.1
- Aligned Length:
- 3280
- Identities:
- 1215
- Gaps:
- 1912
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTTTCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCTGGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTG 222
Query 1 ---------------------------------------------------------------------ATGAC 5
|||||
Sbjct 223 TGTGTCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGAC 296
Query 6 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGCACCTCC 79
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 297 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCC 370
Query 80 CCAAGCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCATCCAGGGAAGTCCTGTGACCCTCAGGTGTCAGGGG 153
||||||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||||||||||||||||
Sbjct 371 CCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGG 444
Query 154 AGCCTTCAGGCTGAGGAGTACCATCTATATAGGGAAAACAAATCAGCATCCTGGGTTAGACGGAT---ACAAGA 224
.|||...||.|..|||||||||.|||||||||.|||||.|||.|||||.|||||.|||.|||||| |||.||
Sbjct 445 GGCCAGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGA 518
Query 225 GCCTGGGAAGAATGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACGCAGGGCGGTATCACTGTCAGTACT 298
||.||.||||||.||||||||||||||||||||||||||||||||||||.||||||||||||.|||| ||||
Sbjct 519 GCTTGTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGT---TACT 589
Query 299 A---CAGCCACAATCACT-CA------TCAGAGTACAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAG 362
| .|||.| |||| || ||||||..||||||||||||||||||||||||||||||||||||||.
Sbjct 590 ATGGTAGCGA----CACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAT 659
Query 363 CAAACCCACCCTCTCAGCTCTGCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCCAGTGTGTCTCAC 436
||||||||||||||||||.|.|||||||||.|||||||.||.|||||||||.||.|||||||||||||.|||||
Sbjct 660 CAAACCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCAC 733
Query 437 AGGTGGCATTTGACGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAACGCCTGAACTCCCATTCC 510
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||..||
Sbjct 734 AGGTGGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCC 807
Query 511 CATGCCCGTGGGTGGTCCTGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTG 584
|||||||||||||.||||.|.|||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 808 CATGCCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTG 881
Query 585 CTATGCTTATGACTCGAACTCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCCAGGTG 658
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 882 CTATGCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTG 955
Query 659 TTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATGGTGGCCCCTGGGGAGAGCCTGACCCTCCAGTGT 732
||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||.||||||.||.||||||
Sbjct 956 TTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGT 1029
Query 733 GTCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGAGAACGTGACTTCCTCCAGCGCCCTGGTTG 806
|.||||||||..||||||.||||||||||||||||||||||.||.||||||||||||||.||||.|.||||...
Sbjct 1030 GGCTCTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGC 1103
Query 807 GCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACA 880
.||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||||||||||
Sbjct 1104 ACAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACA 1177
Query 881 GATGCTACAGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGTGACCCCCTGGACATCCTGATCACAGGA 954
||||||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.||||.
Sbjct 1178 GATGCTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGT 1251
Query 955 CA------------GTTCTATGACAGACCC-------------TCTCTCTCGGTG-----CAGCCGGTCCCCAC 998
.| ||||..|.|..||||| .|.||..|||.| |||||||.||||||
Sbjct 1252 GAGGAGCCCAGCGGGTTCAGTCAGGGACCCAGGCTCCGCACAGGCCCTGCCGGGGGAGCTCAGCCGGGCCCCAC 1325
Query 999 AGTAGCCCCAGGAAAGAACGTGACCCTGCTGTGTCAGTCACGGGGGCAGTTCCACACTTTCCTTCTGACCAAGG 1072
.||.|||.|||||.|||||||||||||||||||||||||||.|||...|.|.||.|||||||||||||||||||
Sbjct 1326 GGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACAGGGATGGATGCAAACTTTCCTTCTGACCAAGG 1399
Query 1073 AGGGGGCAGGCCATCCCCCACTGCATCTGAGATCAGAGCACCAAGCTCAGCAGAACCAGGCTGAATTCCGCATG 1146
|||||||||...||..||||..||.|||.||||||..|.|||||.||||..|..|||||||||||||||.||||
Sbjct 1400 AGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATG 1473
Query 1147 GGTCCTGTGACCTCAGCCCACGTGGGGACCTACAGATGCTACAGCTC------ACTCAGCTC-----CAAC--- 1206
||||||||||||||||||||.|.|||||||||||| .||.| || .|.|||||| ||||
Sbjct 1474 GGTCCTGTGACCTCAGCCCATGCGGGGACCTACAG----GACCG-TCTGGGGGCCCCAGCTCCCCGACAACAGG 1542
Query 1207 CCCTACCT-----GCTGTCTCT---------CCCCAGTGACCCCC-------TGGAGCTC----GTGGTC---- 1251
|||.|||| .|||.|.|| |||| |.|||||| .|||.|.| ||||||
Sbjct 1543 CCCCACCTCCACATCTGGCCCTGAGGACCAGCCCC--TCACCCCCACCGGGTCGGATCCCCAGAGTGGTCTGGG 1614
Query 1252 --------------------TCAGCATC--------------CCTA---------------------------- 1263
||.||||| ||||
Sbjct 1615 AAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCC 1688
Query 1264 -----------------------GGCCAACAC---------CCCCAG---------GATTACACAGTGGAGAAT 1296
|||.||||| .||||| ||||.|..|
Sbjct 1689 TCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAA--------- 1753
Query 1297 CTCATCC-GCATGGG-TGTGGCTGGCTTGGTCC-------------------TGGTGGTC-------------- 1335
||||| |||.||| ||||| |||..|..|| |||.||||
Sbjct 1754 --CATCCTGCAGGGGCTGTGG--GGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCG 1823
Query 1336 ---CTCGGG------------ATTCTGCTATTTGAGGCTCAGCACAGCCAGAG--------------------- 1373
|.|.|| ||.|||| ..|||.||.|| |||||||.|||
Sbjct 1824 ATGCCCAGGAAGAAAACCTCTATGCTGC--CGTGAAGCACA-CACAGCCTGAGGATGGGGTGGAGATGGACACT 1894
Query 1374 -----AAGCCTACAAGATGCAG-CCGGGAGG------------------------------------------- 1398
.||||.|||.||||.|| ||...|||
Sbjct 1895 CGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGA 1968
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1969 AATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCGGAAGAGGACAGGC 2042
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2043 AGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTC 2116
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2117 AGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCACTCT 2190
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2191 GGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATGGGAGCTGCCCCCC 2264
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2265 CAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTTAGGGGTCACTCAA 2338
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2339 TTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAATAATCAATGAAGTA 2412
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2413 GCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACATCAAGCGATGAAACTG 2486
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2487 GAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCTTGGCTTTCCTATA 2560
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2561 AGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCAC 2634
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2635 GAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATACAAAAATTAGCTG 2708
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2709 GATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAGTCA 2782
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2783 GAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCCATCTCAAATTAAA 2856
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2857 AAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTCCAAATGAAGGCGT 2930
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2931 AAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAAAATTCAACAAAGC 3004
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3005 CAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAAAAGAGAAAGAAAGAGC 3078
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3079 AGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTTTCCAAAACTAACA 3152
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3153 ATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAAATATTCTAAACTGGAG 3226
Query 1399 ------------------------ 1398
Sbjct 3227 TTTACATAATGAACATAAGAGTAA 3250
