Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07799
- Subject:
- XR_001782861.1
- Aligned Length:
- 3959
- Identities:
- 1216
- Gaps:
- 2549
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTATTTTTCTATTTTATTTTTTTAAGTGAGACAAAGAACATGAATTTGGATGGCACGTTGGCTGGAATAAGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAGTCCCCGTAGGCTCATATATCCGAACGCTTAGTCATCAGGGAATAGCACTATTTGAGGAATTAGGACTTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGTGACCTTGTTGGAGGAAGTAAGTCACTGACAGTGGGCTTTGGGTTTTAAAAAGTCGATAAGGACAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGTTAGGCGCGATGCTTTCCACTGCTGCTTACCGGGACTGGGACCGAGAGCTTGGAATGGGACCTCAGGGCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTCGGCCCTGTGTAGCTGCGTTTTTCACCTTATGCCTTCAACGGAGGTCCTGTATTGGCAATTGCTGGAGAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTTTCCATCGTTGCTTCAGACACTCGGTTGAGTGAAGAATTTTCAATTCATACCCGAGATAGCCCCAAATGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATAAACTAACAGACAAAACAGTAATTGGCTGCAGTGGTTTTCATGGAGATTGTCTCACTTTGACAAAGATTAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGAAACAAGATTAAAGATGAACAAGGCCATGAGAACGGGGGCAGTTGCCGCAATGCTGTCTACCATCCCGTGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CACGGCGCTTCTTCCCTTACTATGTTTACAACATCATTGGAGGACTTGATGAAGAAGGAAAGGGAGCTGTATAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTTTGACCCAGTGGGCTCTTACCAGAGAGACTCTGTCAAGGCAGGAGCTTCAGCAAGTGCCACGCTACAGCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTGCTGCACAACCAGACTGGTTTCAGACGTATGCAAAGTGTGGAGCATGTCCCCCAGGATCCTGGACAGAGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGAGGCTGGTGAAAGATGTCTTCATTTCTGCAGCCGAGAGGGATGTGTATACTGGAGATGCCCTCAGGATCTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CATCGTGACCAAAGAGGGCATCAGGGAGGAAACTGTTCCCCTGCGGAAAGACTCATGTGTGGGTCATATATTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGCTGTGGCACAAGTTTGTTTTATTAAAAAGAAATGTAAAGCACTCATTTTCTTACACTGTGTCTTCTCTAAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGACAAATTGGGAAGAATTTCGTCCTTAGGGGTTGGAGAGAGAACTCTTCAGTTTAAAAAGTATGGCTCTTGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGAACCTCCGTTTGATTCCTAACACCCACCTGTAACTCCAGTTCCAGGGGCTACAGTGTCCTCTTCTGGCCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AACAGGTACATGCAAATGTCCACATACAAATGTATGAAATGAAAAATAAAACCACTAATAAAATTTCTTTTTCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTAAAATTTTTTTTAAAAAGTTGATACCAAGCCCAGAATTTCTTTCTGCCAACAAATTAGGATCTAGTTCTCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTACTACTCCAGCATCTGCCTATATGCTGCTATGCTTCCTGTCATGATAATGGATTAAACCTCTGAAACTGTAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAAAGCCCATTTAGTTTTCTCCTGTAACAGTTACCTTAGTCATGGTGTCTCTTACACTGCAATAGAGCTGTGAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAAGGTAGGTGAGTAGAGAGCGTGAGGATCTTGGAGGAGTTAGGGGAGGGGAAAGATTATGATCAAATTATAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTATTGAAAAGTTTAATAAAAAATTAAAGTACTAAATACTATTTGAAACAATGAATCTTACATATTTAAAGACT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CATTATTTCCCTACTTTTATTTCCTTTAAAAATAAATTAACGGGGAGGCCGGAAGTAGTCGAAGCCAGCGGCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGTAGCCGAAGCCAGAGGCGAAAGTAGCCGAAGCCAGAGGCGAAAGTAGCCGAAGCCATTGGCGGAAGCAGCC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAAGCCAGCGGCGGAAGTAGTTGAAGCCAGCGGCGGAAGTAGCCAGAGCGGGCAGGCGGCGAGGCGAGGCAAGA 1850
Query 1 -------------------------------ATGTCGGACTTCGACGAGTTCGAGCGGCAGCTCAACGAGAATA 43
||||||||||||.||.||||.||||.|||||||||.|.|||.|
Sbjct 1851 GCTACACAGGGCCCTACGCAGTCGCGTAAGCATGTCGGACTTCTACAAGTTTGAGCAGCAGCTCAAGGGGAACA 1924
Query 44 AACAAGAGCGGGACAAGGAGAACCGGCATCGGAAGCGCAGCCACAGCCGCTCTCGGAGCCGGGACCGCAAACGC 117
||.||||.||||||||||||||||||||.|..|||||.||.|||||.||||||||.|||||.||..|.||.|||
Sbjct 1925 AAGAAGAACGGGACAAGGAGAACCGGCACCATAAGCGTAGTCACAGTCGCTCTCGAAGCCGAGATAGAAAGCGC 1998
Query 118 CGGAGCCGGAGCCGCGACCGGCGCAACCGGGACCAGCGGAGCGCCTCCCGGGACA------GGCGACGACGCAG 185
.|||||.|||||||.||.||||||||.|..||||||||.||.|.|||.|.|||.| ||||||||||.||
Sbjct 1999 AGGAGCTGGAGCCGAGAGCGGCGCAATCCAGACCAGCGCAGTGACTCTCAGGATAGGAGGCGGCGACGACGAAG 2072
Query 186 CAAACCTTTGACCAGAGGCGCTAAAGAGGAGCACGGTGGACTGATTCGTTCCCCCCGCCACGAGAAGAAGAAGA 259
|.|||.|||||||||||||||||||||||||||.||||||..||||||||||||..||||.| |||||||||
Sbjct 2073 CCAACATTTGACCAGAGGCGCTAAAGAGGAGCAGGGTGGATGGATTCGTTCCCCGTGCCATG---AGAAGAAGA 2143
Query 260 AGGTCCGTAAATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCACCCCAATGCAGTACAAGGCCATGCAA 333
||||.||||||||||||||||||||.||.||.||||||||||||.|||||||||||||||||||||||||||||
Sbjct 2144 AGGTGCGTAAATACTGGGACGTGCCGCCACCTGGCTTTGAGCACGTCACCCCAATGCAGTACAAGGCCATGCAA 2217
Query 334 GCTGCGGGTCAGATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCTGGCTGTGACCCCAACGCC 407
|||||.||||||||||.||||||.||.||||||||.||||||||.||||..|||||||||||||||||.|.|||
Sbjct 2218 GCTGCTGGTCAGATTCTAGCCACCGCCCTTCTCCCGACCATGACTCCTGGTGGTCTGGCTGTGACCCCGATGCC 2291
Query 408 GGTGCCCGTGGTCGGGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGGCATCA 481
.|||||.|||||.||||||||||||||||||||.|||.|.||.|||||||||||||.||||||.||||||||||
Sbjct 2292 AGTGCCTGTGGTTGGGAGCCAGATGACCAGACAGGCCAGACGTCTCTACGTGGGCACCATCCCTTTTGGCATCA 2365
Query 482 CTGAGGAGGCCATGATGGATTTCTTCAACGCCCAGATGCGCCTGGGGGGGCTGACCCAGGCCCCTGGCAACCCA 555
|.||||||.|.|||.||||.|||||.|||.|||||||||..|||.||||..||||.|||||||||||||||||.
Sbjct 2366 CCGAGGAGTCTATGCTGGACTTCTTAAACACCCAGATGCATCTGAGGGGCTTGACTCAGGCCCCTGGCAACCCG 2439
Query 556 GTGTTGGCTGTGCAGATTAACCAGGACAAGAATTTTGCCTTTTTGGAGTTCCGCTCAGTGGACGAGACTACCCA 629
.|.||||||||||||||.||.|..|||||.||||||||.||||||||||||||.||||||||.|||||.|||||
Sbjct 2440 ATCTTGGCTGTGCAGATAAATCTAGACAAAAATTTTGCTTTTTTGGAGTTCCGGTCAGTGGATGAGACGACCCA 2513
Query 630 GGCTATGGCCTTTGATGGCATCATCTTCCAGGGCCAGTCACTAAAGATCCGCAGGCCTCACGACTACCAGCCGC 703
|||..|||||||||||||||||||||||||||||||||||.|.|||||.||.||||||||.||||||||.||.|
Sbjct 2514 GGCCTTGGCCTTTGATGGCATCATCTTCCAGGGCCAGTCATTGAAGATTCGAAGGCCTCATGACTACCAACCAC 2587
Query 704 TTCCTGGCATGTCAGAGAACCCCTCCGTCTATGTGCCTGGGGTTGTGTCCACTGTGGTCCCCGACTCTGCCCAC 777
|.|||||||||||||.||.||||||.||.|||||||||||.|||||.|||||..|.|||||.||||||||||||
Sbjct 2588 TGCCTGGCATGTCAGGGAGCCCCTCTGTTTATGTGCCTGGAGTTGTATCCACCATAGTCCCAGACTCTGCCCAC 2661
Query 778 AAGCTGTTCATCGGGGGCTTACCCAACTACCTGAACGATGACCAGGTCAAAGAGCTGCTGACATCCTTTGGGCC 851
|||||||||||||||||.||.|||||||||||.||.|||||||||||.||||||||||||||||||.|||||..
Sbjct 2662 AAGCTGTTCATCGGGGGTTTGCCCAACTACCTAAATGATGACCAGGTAAAAGAGCTGCTGACATCCGTTGGGAT 2735
Query 852 CCTCAAGGCCTTCAACCTGGTCAAGGACAGTGCCACGGGGCTCTCCAAGGGCTACGCCTTCTGTGAGTACGTGG 925
.||||.||||||||||.||||||||||.|||..|||.|||||||||||||||||.|||||||||||||||.|||
Sbjct 2736 TCTCAGGGCCTTCAACTTGGTCAAGGATAGTATCACAGGGCTCTCCAAGGGCTATGCCTTCTGTGAGTACATGG 2809
Query 926 ACATCAACGTCACGGATCAGGCCATTGCGGGGCTGAACGGCATGCAGCTGGGGGATAAGAAGCTGCTGGTCCAG 999
|||||||||||||.|||||||||||||||.|||||||.||.|||||.||.|||||.|||||||||||.||||||
Sbjct 2810 ACATCAACGTCACCGATCAGGCCATTGCGTGGCTGAATGGGATGCATCTAGGGGACAAGAAGCTGCTTGTCCAG 2883
Query 1000 AGGGCGAGTGTGGGAGCCAAGAATGCCACGCTGAGCACCATCAATCAGACGCCTGTGACCCTGCAAGTGCCGGG 1073
|||||.|||||||||||||||||||.|.|.|||||||.||||||||||||.|||||||||||.||||||||.||
Sbjct 2884 AGGGCAAGTGTGGGAGCCAAGAATGTCGCTCTGAGCATCATCAATCAGACACCTGTGACCCTTCAAGTGCCCGG 2957
Query 1074 CTTGATGAGCTCCCAGGTGCAGATGGGCGGCCACCCGACTGAGGTCCTGTGCCTCATGAACATGGTGCTGCCTG 1147
|.|||.||||||.|||||||||||||||||.|||||.|||..|||||||||||||||||||||||||||.||..
Sbjct 2958 CCTGACGAGCTCTCAGGTGCAGATGGGCGGTCACCCAACTACGGTCCTGTGCCTCATGAACATGGTGCTCCCCA 3031
Query 1148 AGGAGCTGCTGGACGACGAGGAGTATGAGGAGATCGTGGAGGATGTGCGGGACGAGTGCAGCAAGTACGGGCTT 1221
||||||||||||||||||||||.|||||.|||||.||.||.||.||.||.||||||||||.||||||.||.||.
Sbjct 3032 AGGAGCTGCTGGACGACGAGGAATATGAAGAGATTGTAGACGACGTACGAGACGAGTGCAACAAGTATGGACTG 3105
Query 1222 GTCAAGTCCATCGAGATCCCCCGGCCTGTGGACGGCGTCGAGGTGCCCGGCTGCGGAAAGATCTTTGTGGAGTT 1295
|||||.||.||.||.||.|||||.||..||||.||.||.||||||||.|||||.||||||||||||||||||||
Sbjct 3106 GTCAAATCGATTGAAATTCCCCGCCCCATGGATGGTGTTGAGGTGCCTGGCTGTGGAAAGATCTTTGTGGAGTT 3179
Query 1296 CACCTCTGTGTTTGACTGCCAGAAAGCCATGCAGGGCCTGACGGGCCGCAAGTTCGCCAACAGAGTGGTTGTCA 1369
|||.||||||.||||||||||||||||.||||||||.||.||.||||||||||||||||||||||||||.||||
Sbjct 3180 CACTTCTGTGATTGACTGCCAGAAAGCTATGCAGGGTCTAACTGGCCGCAAGTTCGCCAACAGAGTGGTGGTCA 3253
Query 1370 CAAAATACTGTGACCCCGACTCTTATCACCGCCGGGATTTCTGG------------------------------ 1413
|.||||||||||||||.||||||||.|||.|.|||.|.||||||
Sbjct 3254 CCAAATACTGTGACCCTGACTCTTACCACGGTCGGAACTTCTGGTAGAGGTGGCTGGGGGATGATGGGGACAGA 3327
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3328 GCTGGCTGGGAACTTTTCCCCAACCTGCCCCCTCCTCCTTTCCCCCTTGTGAAGAAAATGGGCAGAGGAGTGAC 3401
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3402 AGCCGGATGACAGCCGACAGCAACTGGATTGGCAGCAATTAAGGGGAACGGGGGTGAGGGGCTAAGGCAGGAAG 3475
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3476 GGGACTGGGTAAGTGCACACAGGCCCACACAGACACATGCACCCACACAGACACAGAGGGAACAGGCTGGGATG 3549
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3550 GGGACTGTGTGTACAGCAGGGCAGGTAGGACCTCCACAGCCCCTTCCCAAACAGCTTCTTCATATCCCTTACAC 3623
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3624 CCCTTTCTTCTTCTCTTCCCCTATGGTAGGAACATAGGATGTTTATATTTTATGGCCAAACGAATTTGAATTTT 3697
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3698 GTTGCCTAGCCTTCAGGGCCCTGCCCTCTCCCTTTGCAGGACCACAGCTCCTATCCTCTGGCTTCTGGTCCTCC 3771
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3772 CTGTTCTCCACCCTGGTTTCTTAAGTAGTTGGTTCTTCTCCTTAGTCTTCCTGACTCTCAACCCATGATCTCTG 3845
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 3846 TCCCGCTCCCCCTCTCAGTGGCAGTTCCATATTTGTTATTACAAATTTGTTCATTAAATATTTTGTTGTATTTT 3919
Query 1414 ------------------------------------- 1413
Sbjct 3920 ACATTTAGAAAATAAATTCATTTTATTGTTTCTCAGA 3956
