Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07836
- Subject:
- XM_011537611.3
- Aligned Length:
- 2300
- Identities:
- 1542
- Gaps:
- 724
Alignment
Query 1 ATGGGGC--TCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCG 72
||||.|| .|||.|| |||| |.|.| |||||||| |.|||
Sbjct 1 ATGGAGCGTGCCCTGC---CGAG----GGGGC-GCTGCCTC---------CCCTT------------------- 38
Query 73 CACGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGC 146
||||| |||
Sbjct 39 ------------------------------------------------------GGGAA---------AAG--- 46
Query 147 GCTCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 --------ATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAG 112
Query 221 ATGCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAA 294
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATGCAGAAACAGATGATGAGATGTGTATAGCAAGATCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAA 186
Query 295 GATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACA 260
Query 369 GATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAAC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAAC 334
Query 443 ACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 ACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAG 408
Query 517 CATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGT 482
Query 591 GGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCG 556
Query 665 GGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTG 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTG 630
Query 739 GAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATA 704
Query 813 CCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCA 778
Query 887 AACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAA 852
Query 961 TCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGG 926
Query 1035 GGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTG 1000
Query 1109 TCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGG 1074
Query 1183 AAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1075 AAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACTCCAG 1148
Query 1257 AGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAAT 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAAT 1222
Query 1331 GGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAG 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAG 1296
Query 1405 TTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGT 1370
Query 1479 TCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACC 1552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAA--------------- 1429
Query 1553 ACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAA 1626
|||||
Sbjct 1430 ---------------------------------------------------------------------AAGAA 1434
Query 1627 ACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGA--TCCTAATAGAAA---ACCACGAA 1695
| ||.||.| ||| |||||| |||| |.|| |.|| |||||.|.
Sbjct 1435 A--------------ATAGATA-CAA---TCAGAA----------GAGAACTTCT----GCAAGCTACCACCAC 1476
Query 1696 AAGATATTTAACACC-GTGCCCGATATG-------CCTCTCACCAATGC-CCAGCTGCACCTGTCTCGGAAGAA 1760
||.| |..||||| ||||| |||| |.||||.||..||| .|||..|.|||
Sbjct 1477 AATA---TCCACACCTGTGCC---TATGTTTCTGCCATCTCTCCTGTGCGACAGGGGAACC------------- 1531
Query 1761 GAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGC---CCCTGACGCTCTTCC----ACACCGTTCAGTCA 1827
||||| ||||.| ||| |.|||| |||| |||| ||||
Sbjct 1532 ---CAGTG-CTCCTA--------CCT------AAAGGCATTCCCT-------TTCCTGGGACAC---------- 1570
Query 1828 ACAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCAT 1901
.|||| |.| ||..|||||...|||| |||||
Sbjct 1571 -TAGAG---CCG------------------ATTGACTCCCCGTTGG-ATCTG---------------------- 1599
Query 1902 CCTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCC 1975
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1976 GGCCCAACTCACTCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCA 2049
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 2050 TCCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGTCAGCACACCGTTCCGGAAGGCAAAAGC 2123
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 2124 CTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAATGTTCACC 2197
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 2198 CATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAG 2271
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 2272 TTCCTC 2277
Sbjct 1600 ------ 1599
