Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07836
Subject:
XM_017317985.1
Aligned Length:
2497
Identities:
1994
Gaps:
272

Alignment

Query    1  ---------ATG------GGG--------------------CTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTC  39
                     |||      |||                    ||||||| ||||                    |
Sbjct    1  ATGCTGGAAATGCTAAGCGGGATGCTTGACACAGTTGGTCACTCCCAG-GCTC--------------------C  53

Query   40  GATAGTCCGCACTTCCGAGAGACGCTCAAGTCGCACGAAGCAGA----GCTGGACAAGA---------CCAACA  100
            .|.|||||..||||||.|            ||.|||..||.|||    |.|..||||||         .||.|.
Sbjct   54  AAAAGTCCTGACTTCCCA------------TCTCACACAGAAGAAATTGGTTTACAAGAACATTACTCTCACCT  115

Query  101  AATTCATCAAGGAGCTCATCAAGGA--CGGGAA-----GTCACTCATAAGCGCGCTCAAGAATTTGTCTTCAGC  167
            |.||||     |||      |||.|  ||||.|     |.|     ||||   |..||.|.||||||||||.||
Sbjct  116  ACTTCA-----GAG------AAGAAAGCGGGTATTTTTGGC-----TAAG---GTACATGGATTTGTCTTCGGC  170

Query  168  GAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGATGATGAGA  241
            .||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||
Sbjct  171  AAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGTATAGGAGATGCCGAAACAGATGATGAGA  244

Query  242  TGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATACGGATGATT  315
            ||||||||||.||.||||||||.||.|||||..||||.|||||||||||||||||.||.||||..||.|||||.
Sbjct  245  TGTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAGCGGAGTCGAATGATC  318

Query  316  GAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAGGAAGC  389
            ||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||||.||||.||||||
Sbjct  319  GAGAATGCCAGCGAGGTGCTCATCACACCCTTGGAGAAGTTTCGAAAGGAGCAGATTGGGGCCGCCAGGGAAGC  392

Query  390  CAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTCTTCCAAAA  463
            ||||||||||||||||||||||||.||.|||||.||.||||.||||||||||||.|||||||||||||||||||
Sbjct  393  CAAAAAGAAGTATGACAAAGAGACCGAGAAGTACTGCGGCACCTTAGAAAAACATTTGAATTTGTCTTCCAAAA  466

Query  464  AGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAGTATCCCTG  537
            ||||.|||||.|||||.|||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||
Sbjct  467  AGAAGGAATCCCAGCTACAGGAGGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTG  540

Query  538  GAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTGGCCTTCCT  611
            ||.||||||||.||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  541  GAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCT  614

Query  612  GCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGACACAGTTAA  685
            |||||||||||||||||||||||||||||||||.||.||||||||||||||.||.|||||.|||||||||||.|
Sbjct  615  GCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGA  688

Query  686  CCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGAAAAAGATG  759
            ||||.||||||||.||.||||||||.|||||||||||.||.||.||.||.||||||||.||||||||.||||||
Sbjct  689  CCATCAGCATACAAAATACAAGAAACCGCTTTGAAGGAACCAGGTCTGAGGTGGAATCGCTGATGAAGAAGATG  762

Query  760  AAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAGGAGAAACG  833
            |||||.||.|||||.|||||||||||||||||.||.|||||||||||.||.|||||.||||||||||||||.||
Sbjct  763  AAGGAAAACCCCCTGGAGCACAAGACCATCAGCCCGTACACCATGGAAGGGTACCTGTACGTGCAGGAGAAGCG  836

Query  834  TCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCATGGTACCAT  907
            |||||||||||||||.||||||||||||||||||||.||.|||||||||||||||||||||||||||||.||||
Sbjct  837  TCACTTTGGAACTTCCTGGGTGAAGCACTACTGTACCTACCAACGGGATTCCAAACAAATCACCATGGTTCCAT  910

Query  908  TTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACA  981
            |.||||||||||||||||||||.|||||||||||.||.||.||||.|||||||||||||||||||||.||.|||
Sbjct  911  TCGACCAAAAGTCAGGAGGAAAGGGGGGAGAAGACGAGTCCGTTACCCTCAAATCCTGCACACGGCGAAAGACA  984

Query  982  GACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTT  1055
            ||||||||.||||||.|.||.||||||||.||||||||||||||||||||||||||||||||||||||.||.||
Sbjct  985  GACTCCATCGAGAAGCGATTCTGCTTTGACGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAGGCGTT  1058

Query 1056  GTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACA  1129
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||.||||.|||||
Sbjct 1059  GTCGGAAGAGGACCGTAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTGTACAACTCCAACAGAGACA  1132

Query 1130  GCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAA  1203
            |||||||.||||||||.||.||.||||||||.||.||||||||||||||.|||||||||||||||||.|||||.
Sbjct 1133  GCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAG  1206

Query 1204  ACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGT  1277
            ||||||||||||||.|||||.|||||.||.|||||.|||||||||||||||||.|||||||||||||||||.||
Sbjct 1207  ACCAGAGGGATCAATGAGCAGGGGCTCTACCGAATCGTGGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGT  1280

Query 1278  CCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACTA  1351
            |||||||||||||||..|.|||||||||||||||||.|||||||||||.||||||||||||||||||.||||.|
Sbjct 1281  CCTGATGGACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCA  1354

Query 1352  GTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAA  1425
            |||||||||||||||||||.||||||||.||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1355  GTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAA  1428

Query 1426  GCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAA  1499
            ||||||||.|||||.|||||.|||.||||.||.|||||.||||||||.|||||.|||||||||||.|||||.||
Sbjct 1429  GCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAA  1502

Query 1500  TCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTTGATGACGG  1573
            ||||||||||||.||||||||||||||||||.||||.|||||||||||||||||||||||||||.|||||||.|
Sbjct 1503  TCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTG  1576

Query 1574  TGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGAC  1647
            ||||||||||.||.|||||||||||||||||..||||..||||||||||||||||.||.||.||||||||||||
Sbjct 1577  TGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGAC  1650

Query 1648  ATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTGCCCGATAT  1721
            |||||.|||||||||||||||||.||||||.||||.||.|||||.||.||||||||.|||||.|||||.|||.|
Sbjct 1651  ATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGT  1724

Query 1722  GCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGA  1795
            |||.||||||||.||||||||.||||||||.||||||||.||||||||||||||||||||.|||||||||.|||
Sbjct 1725  GCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGA  1798

Query 1796  GGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGT  1869
            |||||||||||||||||||..|.||.|..||.|||||.||||||||.||.||||||||||||||||||||||||
Sbjct 1799  GGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGCAGAGGAACAGCATCATCAACTCCAGT  1872

Query 1870  TTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAG  1943
            ||||||||.|||||.||.|.|.||||||||||||||||.||.|||||||||.|.||||||||..||||.|||||
Sbjct 1873  TTGGAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAATTCCAG  1946

Query 1944  TGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTCCCCCCGAATCCAAGCCCAACTTCACCCC  2017
            .|||.||.||||||.||||||||||||.|..|||||||..||||||||||||||||||||||||||||||||||
Sbjct 1947  CGACTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAGTTCACTCCCCCCGAATCCAAGCCCAACTTCACCCC  2020

Query 2018  TCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCC  2091
            ||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021  TCTCGCCATCATGGCCCATGTTCTCGGCACCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCC  2094

Query 2092  CCCGT---------------------------------------------------------------------  2096
            |||.|                                                                     
Sbjct 2095  CCCATCAGGTCTGTGGCAGGGTTTGTTTGGTTTTCTGTTGCTGCCGTTGTTCTCTCATTGGCTTGGTCCTCTCT  2168

Query 2097  --------------------------------------------------------------------------  2096
                                                                                      
Sbjct 2169  TCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAG  2242

Query 2097  ----------------------CAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACAT  2148
                                  |||||||||.||||||||||||||.||.|||||.||||||.|||||||.||.
Sbjct 2243  AAGAAGCGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCAC  2316

Query 2149  GACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAATGTTCACCCATCTCAGGAGCCTGGCTGGTTGGA  2222
            |||||.||.||.||.||||||||.|||||.|||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2317  GACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGCTGGTTGGA  2390

Query 2223  GGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTC  2277
            ||||||||||||.||||||||||||||||||||.|||||.||||||||.||||||
Sbjct 2391  GGGGACTCTGAATGGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAATTCCTC  2445

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.