Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07836
Subject:
XR_944319.3
Aligned Length:
3049
Identities:
2199
Gaps:
810

Alignment

Query    1  --------------------------------------------------------------------ATGGG-  5
                                                                                .|||| 
Sbjct    1  CTTTTGCGTTCAGGGATGGTCGGGAGGTGACCCAGCGCGGGTGGTGCTCTGGGGCAGCGCGGGTGGGCGTGGGC  74

Query    6  --GC--------------TCCCAGC------GCTCGAGTTC--AGCG-ACTGCTGCCTCGATAGTCCGCACTTC  54
              ||              |||||||      ||..||||.|  |||| .|.||.|||     ||...|||..||
Sbjct   75  GTGCGCGGCACGCAGGTGTCCCAGCAGTGGGGCCAGAGTGCCGAGCGCGCCGCAGCC-----AGCGGGCAGATC  143

Query   55  CGA--GAGAC----GCTCAAGTCGCAC---GAAGCAGAGCTGGACA--------AGACCAAC-----AAATTCA  106
            |.|  |.|.|    ||||.|| |.|.|   |..||||||.||..||        .|.|||||     .|||   
Sbjct  144  CCATCGTGTCCACAGCTCCAG-CTCCCTTAGGGGCAGAGTTGCTCAGCCTTGAGTGCCCAACCGTGAGAAT---  213

Query  107  TCAAGGAGCTCATCAAG---------GACGGGAAGTCACTCATAAGCGC--GCTC----------AAGAATTTG  159
                |||||       |         ||.|||             ||||  .|||          ||| |||||
Sbjct  214  ----GGAGC-------GTGCCCTGCCGAGGGG-------------GCGCTGCCTCCCCTTGGGAAAAG-ATTTG  262

Query  160  TCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGA  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  263  TCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGA  336

Query  234  TGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATAC  307
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  337  TGATGAGATGTGTATAGCAAGATCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATAC  410

Query  308  GGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCC  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  411  GGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCC  484

Query  382  AAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTC  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  AAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTC  558

Query  456  TTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAG  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  559  TTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAG  632

Query  530  TATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTG  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  633  TATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTG  706

Query  604  GCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGAC  677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  707  GCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGAC  780

Query  678  ACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGA  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781  ACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGA  854

Query  752  AAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAG  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  855  AAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAG  928

Query  826  GAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCAT  899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  929  GAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCAT  1002

Query  900  GGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGC  973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003  GGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGC  1076

Query  974  GGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATG  1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077  GGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATG  1150

Query 1048  CAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAA  1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151  CAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAA  1224

Query 1122  CAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATG  1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225  CAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATG  1298

Query 1196  CTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTG  1269
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1299  CTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACTCCAGAGTGCAGAAGTTG  1372

Query 1270  CTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGAC  1343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373  CTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGAC  1446

Query 1344  CATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTT  1417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447  CATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTT  1520

Query 1418  TCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCA  1491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521  TCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCA  1594

Query 1492  GAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTT  1565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595  GAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTT  1668

Query 1566  GATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCA  1639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669  GATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCA  1742

Query 1640  TCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTG  1713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743  TCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTG  1816

Query 1714  CCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTG  1787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817  CCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTG  1890

Query 1788  CAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCA  1861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891  CAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCA  1964

Query 1862  ACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATG  1935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965  ACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATG  2038

Query 1936  AACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTCCCCCCGAATCCAAGCCCAAC  2009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039  AACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTCCCCCCGAATCCAAGCCCAAC  2112

Query 2010  TTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCG  2083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113  TTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCG  2186

Query 2084  ACTCATCCCCCGTCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAA  2157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187  ACTCATCCCCCGTCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAA  2260

Query 2158  CTTTCGTTCACAGCAGGCACGGTCTTCGATA-----------------------------ATGTTCAC--CCA-  2199
            |||||||||||||||||||||||||||||||                             ||.|||||  ||| 
Sbjct 2261  CTTTCGTTCACAGCAGGCACGGTCTTCGATAACGCAGAGTGTCCTTCAGCTTCCACAGCCATCTTCACTGCCAC  2334

Query 2200  ------------------------TCTCAGGAGCCTGG---------CTGG-----------------------  2217
                                    |||||    |||||         ||||                       
Sbjct 2335  ACCGAAGCTCCGGGCACCTCCACCTCTCA----CCTGGGCACTTCCACTGGCCGCCTGACACATCTTCTCACAT  2404

Query 2218  ------TTG-------------------------------GAGGGGACTCTG---AACGGAAA-----------  2240
                  |||                               |||.|..||.||   ||||||||           
Sbjct 2405  CTGCTCTTGCTGCCATAACCCCCTCTTTACAGAGCAGCGAGAGTGATCTTTGAAAAACGGAAATGGCATTAAAG  2478

Query 2241  -----GACTGGCCT--CAT--CCCTGAGAATTACGT----GG-------------AGTTCCTC-----------  2277
                 .|.||||||  |||  |.|||||||||||.|    ||             |||||||.           
Sbjct 2479  CCCTTCAGTGGCCTCCCATTGCTCTGAGAATTACTTACAAGGCCCTCCAGGGCCCAGTTCCTGCCCCTCTGACC  2552

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2553  TCACGCCCTCACTTGACATACTACAGCCTCATGCCTTCTTCATGTTCTCAAGCAAGGTCGGCAAACTATGACCT  2626

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2627  GCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTCTGTAACTGCTCCCACATACAACATGGTCGTCATC  2700

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2701  ATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTTGGTTGAGTGAGTGAGAGACCTTACCCAAGCCTTC  2774

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2775  CTGTGGTCTCTAGGAGTCATGGCAGAGTTCGCTGACACTGGTCTGCTTTTAACCAGCCTTGCCAGTGACCTTTC  2848

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2849  AAATTCCCTGAGGAGCAAAAGGCCAAATTGAACCTGAAAGAAAACACCTCTCAGTGTTGACTGAGTTGCAGTAG  2922

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2923  AAAATGGACCTGACAAAACTTCACCCATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGG  2996

Query 2278  ---------------  2277
                           
Sbjct 2997  CCTCATCCCTGAGAA  3011

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