Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07841
- Subject:
- XR_001749525.2
- Aligned Length:
- 4822
- Identities:
- 2183
- Gaps:
- 2588
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGTCCTTAGCTTCCCGGGGACAGGAAACCTTCAAGACCGAGCTGCCACGGCCGCCTCCCCGCCCGCCCCCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTCTACGCGCCTGCCCACACCCTCCTCCCCTCCTTCCAGCGCCTTTCGGTGGAGCACTGCGGCACTCAGCCCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTGCCGTTTTCCCCTCGCGGGGAACGCTGTGACCCCCCCGCAGGAGCGGCGGGGCGGGGTGGGGGGGCCCGGG 222
Query 1 -----ATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTGCACCCACTT 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGAAGATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTGCACCCACTT 296
Query 70 CATCATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGCGCCCCCGGCGGGGCGGGTGGTGG 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CATCATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGCGCCCCCGGCGGGGCGGGTGGTGG 370
Query 144 CGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAACCGGGGTCTGGAGCGCGCGCTTGAGGAGGCGGCCAACT 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAACCGGGGTCTGGAGCGCGCGCTTGAGGAGGCGGCCAACT 444
Query 218 CCGGGGGGCTGAACCTGAGCGCCAGGAAATTGAAGGAATTTCCCCGTACCGCAGCCCCCGGGCATGACCTCTCG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 445 CCGGGGGGCTGAACCTGAGCGCCAGGAAATTGAAGGAATTTCCCCGTACCGCAGCCCCCGGGCACGACCTCTCG 518
Query 292 GACACGGTGCAGGCAGACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACACGGTGCAGGCAGACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACT 592
Query 366 GGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATGCTGACTT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATGCTGACTT 666
Query 440 ACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATC 740
Query 514 GCAAGTAACAACAAACTTGGATCATTACCAGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCAAGTAACAACAAACTTGGATCATTACCAGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAG 814
Query 588 CTGCAACGAGATCACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGCAACGAGATCACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAA 888
Query 662 ATTACCTTAAAGTTTTACCACAAGAACTAGTAGATCTTCCCTTGGTAAAGTTTGACTTTTCCTGCAACAAAGTG 735
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 889 ATTACCTTAAAGTTTTACCACAAGAACTAGTAGATCTTTCCTTGGTAAAGTTTGACTTTTCCTGCAACAAAGTG 962
Query 736 CTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTGTTACTACTTGAGAATAACCCTCTGCAGTC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTGTTACTACTTGAGAATAACCCTCTGCAGTC 1036
Query 810 TCCTCCAGCACAGATTTGCACAAAGGGCAAAGTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGATTA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCCTCCAGCACAGATTTGCACAAAGGGCAAAGTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGATTA 1110
Query 884 AGACAGCTGACTCCCTTTATCTCCACACCATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGACAGCTGACTCCCTTTATCTCCACACCATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAG 1184
Query 958 GATTCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCTGACGAAGACAC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATTCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCTGACGAAGACAC 1258
Query 1032 TGTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATCATCAAGGAGGACTCGTGCCATCGCC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATCATCAAGGAGGACTCGTGCCATCGCC 1332
Query 1106 TTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTTCAACCGGAGCCTTCCCTTTTGGGTGACAGCACCAACTCA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTTCAACCGGAGCCTTCCCTTTTGGGTGACAGCACCAACTCA 1406
Query 1180 GGAGAAGAAAGAGACCAGTTTACTGATAGAGCAGATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGAGAAGAAAGAGACCAGTTTACTGATAGAGCAGATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGC 1480
Query 1254 AGAAGACTGTGAAGAGCTGTTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGTTCATCCA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGAAGACTGTGAAGAGCTGTTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGTTCATCCA 1554
Query 1328 AAGATCAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGA 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGATCAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGA 1628
Query 1402 TTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTATATCCTATGGGATCAGCAGAAGCCTTAGAATTACA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTATATCCTATGGGATCAGCAGAAGCCTTAGAATTACA 1702
Query 1476 AGATTCTGCACTGAATGGTCAAATACAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTAC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGATTCTGCACTGAATGGTCAAATACAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTAC 1776
Query 1550 AGAGTAACGGGAGCCAGTATTCTCCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAACAGC 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGAGTAACGGGAGCCAGTATTCTCCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAACAGC 1850
Query 1624 ACAGCTCCATTTGGCCTGAAGCCTCGATCAGACCCAGCCCTCATTCTTCCTCCTATCTCCTTCAACACACTTAC 1697
||||||||||||||||||||||||||||
Sbjct 1851 ACAGCTCCATTTGGCCTGAAGCCTCGAT---------------------------------------------- 1878
Query 1698 ACAGGCACAGACATGGGACAGCTCTAGCTACAGTGTTCCATCTGAAGGAGACAGTGACAATGTGTTTCTAAGAC 1771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 -CAGGCACAGACATGGGACAGCTCTAGCTACAGTGTTCCATCTGAAGGAGACAGTGACAATGTGTTTCTAAGAC 1951
Query 1772 CTCAGAGAAATTTGGAATCTATAGACCCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAA 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CTCAGAGAAATTTGGAATCTATAGACCCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAA 2025
Query 1846 GAGCTGGTGGAACAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAAGACCTGGGGGCAGC 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 GAGCTGGTGGAACAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAAGACCTGGGGGCAGC 2099
Query 1920 CCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGCCCACGGTCGGTTGCAAGCATCCATGTCC 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGCCCACGGTCGGTTGCAAGCATCCATGTCC 2173
Query 1994 CATCACCAGCGGTTCCCAAACTTAGCATGGCCAAATGCAGAAGAAATGTGGAAAACTTTTTGGAAGCGTGCCGA 2067
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 2174 CATCACCAGCGGTTCCCAAACTTAGCATGGCCAAATGCAGAAGAAATGTGGAAAACTTTTTGGAAGCATGCCGA 2247
Query 2068 AAATTAGGAGTACCAGAGGCTGACCTCTGCTCTCCGTGTG------ACATCCT-----------GC-------- 2116
|||||||||||||||||||...|.||.|| ||||| ||||||| ||
Sbjct 2248 AAATTAGGAGTACCAGAGGAAAAGCTATG-TCTCC-----CCCACCACATCCTTGAAGAAAAAGGCCTGGTCAA 2315
Query 2117 AGTTGGATTTTC--GTCA--CATT-----------------CGAAAG-ACTGTTGAC----------------- 2151
|||.||..||.| .||| |||| ||||.| .|||||.||
Sbjct 2316 AGTGGGCATTACCATTCAAGCATTACTAGACATCACCGTAACGAAGGCTCTGTTCACATGAAACTACCCCTTCT 2389
Query 2152 ---------------ACTCTGCTGGCACTCGGGGA----GAA---AGCCCCA---------------------- 2181
||||||||..|| ||..||| ||| .||.|||
Sbjct 2390 CCATTGGGGGCTCAGACTCTGCTCTCA-TCCAGGATCCTGAACTCTGCTCCAGGCACCTGTTCAACCCTCTCTC 2462
Query 2182 CCACCAACT-TCTG-CCCTCC----GCTCCAGGGACCTT---ATAGGCTTCTGTCT---TGTCCATATTCT--C 2241
|||||.||| .||| |.||.| .||||||..||.|| |.|...|||.|||| .|...||.|||| |
Sbjct 2463 CCACCCACTGCCTGTCACTTCACTGACTCCAGTTACATTGAAACAATTTTCAGTCTAAGGGAGGATTTTCTACC 2536
Query 2242 TTTATAGTGCTG------GTCTATATCACTT-------------------ACCA---------CTGG------- 2274
||| .||.|||| |.||.||..|||| |||| ||||
Sbjct 2537 TTT-CAGAGCTGACCTCCGACTTTAAGACTTGACAGGTATTTATCTTGAAACCAGAGAGGGAGCTGGAGGAAAA 2609
Query 2275 -------------------AATGCTCTGTCCGCA---------------------------------------- 2289
|||||..|.|||.|.
Sbjct 2610 AAAAACTGAGCAGCACATCAATGCCTTTTCCACCCTCCTTCATCCTTTCCACACTCACCGACTGCCATTACCAA 2683
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 2684 AACGCCAAGCACAACCGTTTTGCAGCAAGACGCATTCGTTTTATTAAAACCAAACTCGTTATGTATTTAGTGGG 2757
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 2758 GGGAGGGGGGCACAATCAGGTTTTTCACCACCAAATTTTTCGAGAGGTTTCTTGAGACCATTGCCTTTTAAAAA 2831
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 2832 ACTATTTTCGACATACAAAATATTTATATAAATATTATTTATTAGTGAGTTGTTATTCATCCTTTGGATGCAAA 2905
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 2906 TTGTAAATTAGGAAACTATTTTATTACTGCTTTTTTGTGGTTAAACACTTTATTTTAATATAAATGTTGAGTTA 2979
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 2980 TTTTCTATCCTCTTTGGTGTGCGGTAGTTTAGGTCTCAGTAATGTTTCTGGTATATATGATTCCAAAAAAAAGC 3053
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3054 GAAAAACAGGTGCTTTTAGGACACAACTTTTCTGGGGAGGCAATATTGACACTTTGGTTTGTGGAACGTTGGTC 3127
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3128 TTATTTATATTTCTGCATTCCATCCAGTTTCCTACATTCCAGCAGCCCTCTGTCCCCCAATATAATGAACTGAC 3201
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3202 TAAAATCAAGAGAGCACCCCAAAGTTATTTGTAAATAGCTGTGATGGAAAAAAAAAAGACATATTAAACTTGAA 3275
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3276 GCTAAAATGTGAACAATTATTTTTTGGATTCATACTTCTTTTGCTATGCACAAAACATTCACGTTTTAACACAA 3349
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3350 AGAAATAATAAGTGTTAGCATCGTGTGTCTTGAAGTATACTTTTGCACTGTAACTTGGGTTACGTTAAAGAGAG 3423
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3424 CTTAGCACCAAAGGTAGATAATGAAGAAATGGCATAGGAAAGTGGAGATGATAAAAAGTTGATTGTTGAACCAA 3497
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3498 AAAGGGTTTGAAGGGAAGCTTCGACTGAGTATCAGAAATTACTTAAGGCACATAGGACCTGAATCAGGAAACCA 3571
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3572 GCACTTCTTACAACTGCCAGTTTTAAAAGAGGAAATGATTCTGAGATGTGCTCATTTTATTTTAATTTGGTGGT 3645
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3646 TGGTGGTTTTCCAAGTAGTCTGTAAAATCCTGCAAGATTCACAGTCTCTGGTGTGAAACCTCAGAAGTGAGTCG 3719
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3720 TTGTGAGCCTGTGGGCAGCACCACCAAGGCAGGCTAAGGGGAGGGTGCAGTAAGTGGAGTTTGTGAGGCTGAGT 3793
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3794 GGCTGAGGAGGGAGCAAGTGCAACAAAATAGGGCTAGAGAAGAACCAGCCAAGGAGTGGAACCCATGCTGCTCT 3867
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3868 CAGAGATTCACGGAACACGGCAGCCTTCTGCAGGCAGTTCCATGCATGTGCACTCACGCTGCAATCACAGATGT 3941
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 3942 CCCAGTAATTAACCTTTCTAAGTCTTGTGAATGCTGACTGCACTTTCACCTCCTCGAAAAGCCATTGGAAGTTT 4015
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4016 TTAGAGCAGCAGCAGCCACAGTTTGTAAGACAAATGTAGAGGGGGACGCAAAAGAAAAGACACCACCAGGAGGA 4089
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4090 GGATTCAGTGTGCAGTCAGCACAGACCAACATCAACCAAGGCAATGGCTGCCCTCCACTCTTGGGAAGATGGGG 4163
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4164 GGAGGTTTCTGAAAACGGAAATTTGGATTGGCAGCTAGCAGTTATTTCCTATCAGATGTACTGTGCACTTTAAC 4237
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4238 CTAACTTAAAATGTATTTTAATATTTTTCTGTACTGCACAAATACCTGTTTTGTCAAATAGCATAATGATGTAA 4311
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4312 AGAAACATTTTGGACAAAGAGTGTATACAATTTAAGCAACATTCAAAGGTTGACTATATAAGTAGGAGTTTAGC 4385
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4386 CTGCTGCACCTTCACGGGCATTCAGAATGCGGGGTCCTGAAATATTTTCTTACGTGTATATATGGTAGCATGAA 4459
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4460 GCTTTGTAATCATTGTTTTGAGAGATTTTTTTTTCAAAATTAAAGTATTTCTTTTGATATTAATTTTTATTATT 4533
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4534 TTCTTGAAGTTGGTTGTGTAATGTAAATGGCTTCAGTCTTCTGTAAAATTGCTTTTTTTTCTTTTAAATGCAGT 4607
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4608 CCTTCTATGGCTAAGACGTCTTCAAGATCCTTGTACACTGTTTATATGTGCAATAAAATGCATGGCCAGCTGAC 4681
Query 2290 -------------------------------------------------------------------------- 2289
Sbjct 4682 AGTATCGTCAGTGGACAGAATGTATATAGTGCAAATATCCTTCCTTTTATTATTTAACAGCCATTAAAATCTTG 4755
Query 2290 ------------ 2289
Sbjct 4756 GATTTGTACAAA 4767
